Justin Fay - Related publications

Genetics/Center for Genome Sciences Washington University, Saint Louis, St. Louis, MO 
Population genetics, Quantitative genetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Li P, Zhou J, Wang D, Li L, Xiao L, Quan M, Lu W, Yao L, Fang Y, Lv C, Song F, Du Q, Zhang D. Genetic Architecture and Genome-Wide Adaptive Signatures Underlying Stem Lenticel Traits in . International Journal of Molecular Sciences. 22. PMID 34502156 DOI: 10.3390/ijms22179249   
2021 Jakutis G, Stainier DYR. Genotype-Phenotype Relationships in the Context of Transcriptional Adaptation and Genetic Robustness. Annual Review of Genetics. PMID 34314597 DOI: 10.1146/annurev-genet-071719-020342   
2021 Hu Y, Qiu S, Cheng L. Integration of Multiple-Omics Data to Analyze the Population-Specific Differences for Coronary Artery Disease. Computational and Mathematical Methods in Medicine. 2021: 7036592. PMID 34447459 DOI: 10.1155/2021/7036592   
2021 Sun H, Lan X, Ma L, Zhou J. Revealing modifier variations characterizations for elucidating the genetic basis of human phenotypic variations. Human Genetics. PMID 34498116 DOI: 10.1007/s00439-021-02362-4   
2021 Findley AS, Zhang X, Boye C, Lin YL, Kalita CA, Barreiro L, Lohmueller KE, Pique-Regi R, Luca F. A signature of Neanderthal introgression on molecular mechanisms of environmental responses. Plos Genetics. 17: e1009493. PMID 34570765 DOI: 10.1371/journal.pgen.1009493   
2021 Schultz CJ, Goonetilleke SN, Liang J, Lahnstein J, Levin KA, Bianco-Miotto T, Burton RA, Mather DE, Chalmers KJ. Analysis of Genetic Diversity in the Traditional Chinese Medicine Plant 'Kushen' ( Ait.). Frontiers in Plant Science. 12: 704201. PMID 34413868 DOI: 10.3389/fpls.2021.704201   
2021 Ruan X, Wang Z, Su Y, Wang T. Population Genomics Reveals Gene Flow and Adaptive Signature in Invasive Weed . Genes. 12. PMID 34440453 DOI: 10.3390/genes12081279   
2021 Rivas L, Paine S, Dupont PY, Tiong A, Horn B, Moura A, Gilpin BJ. Genome typing and epidemiology of human listeriosis in New Zealand 1999-2018. Journal of Clinical Microbiology. JCM0084921. PMID 34406797 DOI: 10.1128/JCM.00849-21   
2021 Robinson D, Place M, Hose J, Jochem A, Gasch AP. Natural variation in the consequences of gene overexpression and its implications for evolutionary trajectories. Elife. 10. PMID 34338637 DOI: 10.7554/eLife.70564   
2021 Cui Z, Liu J, Chang Y, Lin D, Luo D, Ou J, Huang L. Interaction analysis of Mycobacterium tuberculosis between the host environment and highly mutated genes from population genetic structure comparison. Medicine. 100: e27125. PMID 34477155 DOI: 10.1097/MD.0000000000027125   
2021 Wang Q, Dhindsa RS, Carss K, Harper AR, Nag A, Tachmazidou I, Vitsios D, Deevi SVV, Mackay A, Muthas D, Hühn M, Monkley S, Olsson H, , Wasilewski S, et al. Rare variant contribution to human disease in 281,104 UK Biobank exomes. Nature. PMID 34375979 DOI: 10.1038/s41586-021-03855-y   
2021 Zhao G, Luo C, Luo J, Li J, Gong H, Zheng X, Liu X, Guo J, Zhou L, Wu H. A mutation in LacDWARF1 results in a GA-deficient dwarf phenotype in sponge gourd (Luffa acutangula). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 34390352 DOI: 10.1007/s00122-021-03938-4   
2021 Demidov G, Park J, Armeanu-Ebinger S, Roggia C, Faust U, Cordts I, Blandfort M, Haack TB, Schroeder C, Ossowski S. Detection of mobile elements insertions for routine clinical diagnostics in targeted sequencing data. Molecular Genetics & Genomic Medicine. e1807. PMID 34491624 DOI: 10.1002/mgg3.1807   
2021 Liu D, Ban HJ, El Sergani AM, Lee MK, Hecht JT, Wehby GL, Moreno LM, Feingold E, Marazita ML, Cha S, Szabo-Rogers HL, Weinberg SM, Shaffer JR. × Interaction Revealed by Genome-Wide vQTL Analysis of Human Facial Traits. Frontiers in Genetics. 12: 674642. PMID 34434215 DOI: 10.3389/fgene.2021.674642   
2021 van Blokland IV, Lanting P, Ori APS, Vonk JM, Warmerdam RCA, Herkert JC, Boulogne F, Claringbould A, Lopera-Maya EA, Bartels M, Hottenga JJ, Ganna A, Karjalainen J, , , et al. Using symptom-based case predictions to identify host genetic factors that contribute to COVID-19 susceptibility. Plos One. 16: e0255402. PMID 34379666 DOI: 10.1371/journal.pone.0255402   
2021 Claussnitzer M, Susztak K. Gaining insight into metabolic diseases from human genetic discoveries. Trends in Genetics : Tig. PMID 34315631 DOI: 10.1016/j.tig.2021.07.005   
2021 Ahmed Z, Renart EG, Zeeshan S. Genomics pipelines to investigate susceptibility in whole genome and exome sequenced data for variant discovery, annotation, prediction and genotyping. Peerj. 9: e11724. PMID 34395068 DOI: 10.7717/peerj.11724   
2021 Zhang Y, Wang Y, Zhou W, Zheng S, Ye R. Detection of candidate gene networks involved in resistance to Sclerotinia sclerotiorum in soybean. Journal of Applied Genetics. PMID 34510383 DOI: 10.1007/s13353-021-00654-z   
2021 Mandozai A, Moussa AA, Zhang Q, Qu J, Du Y, Anwari G, Al Amin N, Wang P. Genome-Wide Association Study of Root and Shoot Related Traits in Spring Soybean ( L.) at Seedling Stages Using SLAF-Seq. Frontiers in Plant Science. 12: 568995. PMID 34394134 DOI: 10.3389/fpls.2021.568995   
2021 Merrick LF, Burke AB, Chen X, Carter AH. Breeding With Major and Minor Genes: Genomic Selection for Quantitative Disease Resistance. Frontiers in Plant Science. 12: 713667. PMID 34421966 DOI: 10.3389/fpls.2021.713667   
2021 Lalami I, Abo C, Borghese B, Chapron C, Vaiman D. Genomics of Endometriosis: From Genome Wide Association Studies to Exome Sequencing. International Journal of Molecular Sciences. 22. PMID 34298916 DOI: 10.3390/ijms22147297   
2021 van Eyk CL, Webber DL, Minoche AE, Pérez-Jurado LA, Corbett MA, Gardner AE, Berry JG, Harper K, MacLennan AH, Gecz J. Yield of clinically reportable genetic variants in unselected cerebral palsy by whole genome sequencing. Npj Genomic Medicine. 6: 74. PMID 34531397 DOI: 10.1038/s41525-021-00238-0   
2021 Garcia JA, Lohmueller KE. Negative linkage disequilibrium between amino acid changing variants reveals interference among deleterious mutations in the human genome. Plos Genetics. 17: e1009676. PMID 34319975 DOI: 10.1371/journal.pgen.1009676   
2021 Ma Y, Chhapekar SS, Lu L, Yu X, Kim S, Lee SM, Gan TH, Choi GJ, Lim YP, Choi SR. QTL mapping for Fusarium wilt resistance based on the whole-genome resequencing and their association with functional genes in Raphanus sativus. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 34387712 DOI: 10.1007/s00122-021-03937-5   
2021 Yu QY, Lu TP, Hsiao TH, Lin CH, Wu CY, Tzeng JY, Hsiao CK. An Integrative Co-localization (INCO) Analysis for SNV and CNV Genomic Features With an Application to Taiwan Biobank Data. Frontiers in Genetics. 12: 709555. PMID 34567069 DOI: 10.3389/fgene.2021.709555   
2021 Joslin AC, Sobreira DR, Hansen GT, Sakabe NJ, Aneas I, Montefiori LE, Farris KM, Gu J, Lehman DM, Ober C, He X, Nóbrega MA. A functional genomics pipeline identifies pleiotropy and cross-tissue effects within obesity-associated GWAS loci. Nature Communications. 12: 5253. PMID 34489471 DOI: 10.1038/s41467-021-25614-3   
2021 Yan G, Liu X, Xiao S, Xin W, Xu W, Li Y, Huang T, Qin J, Xie L, Ma J, Zhang Z, Huang L. An imputed whole-genome sequence-based GWAS approach pinpoints causal mutations for complex traits in a specific swine population. Science China. Life Sciences. PMID 34387836 DOI: 10.1007/s11427-020-1960-9   
2021 Reis AC, Salvador LCM, Robbe-Austerman S, Tenreiro R, Botelho A, Albuquerque T, Cunha MV. Whole Genome Sequencing Refines Knowledge on the Population Structure of from a Multi-Host Tuberculosis System. Microorganisms. 9. PMID 34442664 DOI: 10.3390/microorganisms9081585   
2021 Medico-Salsench E, Karkala F, Lanko K, Barakat TS. The non-coding genome in genetic brain disorders: new targets for therapy? Essays in Biochemistry. PMID 34414418 DOI: 10.1042/EBC20200121   
2021 Feng L, Chen Y, Xu M, Yang Y, Yue H, Su Q, Zhou C, Feng G, Ai N, Wang N, Zhou B. Genome-Wide Introgression and Quantitative Trait Locus Mapping Reveals the Potential of Asian Cotton () in Improving Upland Cotton (). Frontiers in Plant Science. 12: 719371. PMID 34408767 DOI: 10.3389/fpls.2021.719371   
2021 Caldu-Primo JL, Verduzco-Martínez JA, Alvarez-Buylla ER, Davila-Velderrain J. and human gene essentiality estimations capture contrasting functional constraints. Nar Genomics and Bioinformatics. 3: lqab063. PMID 34268495 DOI: 10.1093/nargab/lqab063   
2021 Shalizi MN, Cumbie WP, Isik F. Genomic prediction for fusiform rust disease incidence in a large cloned population of Pinus taeda. G3 (Bethesda, Md.). 11. PMID 34544145 DOI: 10.1093/g3journal/jkab235   
2021 Wong AK, Sealfon RSG, Theesfeld CL, Troyanskaya OG. Decoding disease: from genomes to networks to phenotypes. Nature Reviews. Genetics. PMID 34341555 DOI: 10.1038/s41576-021-00389-x   
2021 Weisschuh N, Schimpf-Linzenbold S, Mazzola P, Kieninger S, Xiao T, Kellner U, Neuhann T, Kelbsch C, Tonagel F, Wilhelm H, Kohl S, Wissinger B. Mutation spectrum of the OPA1 gene in a large cohort of patients with suspected dominant optic atrophy: Identification and classification of 48 novel variants. Plos One. 16: e0253987. PMID 34242285 DOI: 10.1371/journal.pone.0253987   
2021 Zeng Z, Zhu S, Wang Y, Bai X, Liu C, Chen J, Zhang T, Wei Y, Li F, Bao Z, Yan L, Wang H, Liu T. Resequencing of 301 ramie accessions identifies genetic loci and breeding selection for fiber yield traits. Plant Biotechnology Journal. PMID 34558775 DOI: 10.1111/pbi.13714   
2021 Kalds P, Luo Q, Sun K, Zhou S, Chen Y, Wang X. Trends towards revealing the genetic architecture of sheep tail patterning: Promising genes and investigatory pathways. Animal Genetics. PMID 34472112 DOI: 10.1111/age.13133   
2021 Arends DW, Miellet WR, Langereis JD, Ederveen THA, van der Gaast-de Jongh CE, van Scherpenzeel M, Knol MJ, van Sorge NM, Lefeber DJ, Trzciński K, Sanders EAM, Dorfmueller HC, Bootsma HJ, de Jonge MI. Examining the distribution and impact of single nucleotide polymorphisms in the capsular locus of serotype 19A. Infection and Immunity. IAI0024621. PMID 34251291 DOI: 10.1128/IAI.00246-21   
2021 Xu J, Liu X, Cai C, Su W, Xie J, Zhang Z, Yang P, Lyu S, Li Z, Lei C, Chen H, Wang E, Ru B, Huang Y. Two cSNPs sites in the fatty acid-binding protein 4 () gene and their association analysis with body measurement data in five Chinese cattle breeds. Animal Biotechnology. 1-8. PMID 34392778 DOI: 10.1080/10495398.2021.1916511   
2021 Chen L, He F, Long R, Zhang F, Li M, Wang Z, Kang J, Yang Q. A global alfalfa diversity panel reveals genomic selection signatures in Chinese varieties and genomic associations with root development. Journal of Integrative Plant Biology. PMID 34487430 DOI: 10.1111/jipb.13172   
2021 Zelyas N, Pabbaraju K, Croxen MA, Lynch T, Buss E, Murphy SA, Shokoples S, Wong A, Kanji JN, Tipples G. Precision Response to the Rise of the SARS-CoV-2 B.1.1.7 Variant of Concern by Combining Novel PCR Assays and Genome Sequencing for Rapid Variant Detection and Surveillance. Microbiology Spectrum. e0031521. PMID 34378966 DOI: 10.1128/Spectrum.00315-21   
2021 Chakravarti A. Magnitude of Mendelian versus complex inheritance of rare disorders. American Journal of Medical Genetics. Part A. PMID 34418293 DOI: 10.1002/ajmg.a.62463   
2021 Sarkadi B, Liko I, Nyiro G, Igaz P, Butz H, Patocs A. Analytical Performance of NGS-Based Molecular Genetic Tests Used in the Diagnostic Workflow of Pheochromocytoma/Paraganglioma. Cancers. 13. PMID 34439371 DOI: 10.3390/cancers13164219   
2021 Al Alawi I, Al Riyami M, Barroso-Gil M, Powell L, Olinger E, Al Salmi I, Sayer JA. The diagnostic yield of whole exome sequencing as a first approach in consanguineous Omani renal ciliopathy syndrome patients. F1000research. 10: 207. PMID 34354814 DOI: 10.12688/f1000research.40338.2   
2021 O'Connor LJ. The distribution of common-variant effect sizes. Nature Genetics. PMID 34326547 DOI: 10.1038/s41588-021-00901-3   
2021 He D, Xie L. A Cross-Level Information Transmission Network for Hierarchical Omics Data Integration and Phenotype Prediction from a New Genotype. Bioinformatics (Oxford, England). PMID 34390577 DOI: 10.1093/bioinformatics/btab580   
2021 Kundave VR, Nehra AK, Ram H, Kumari A, Shahzad M, Vinay TS, Garg R, Banerjee PS, Singh G, Tiwari AK. Genetic diversity in Tams1 gene of Theileria annulata (Duschunkowsky and Luhs, 1904) infecting cattle. Acta Tropica. 106121. PMID 34481790 DOI: 10.1016/j.actatropica.2021.106121   
2021 Dadu RHR, Bar I, Ford R, Sambasivam P, Croser J, Ribalta F, Kaur S, Sudheesh S, Gupta D. Contributes Quantitative Trait Loci and Candidate Genes Associated With Ascochyta Blight Resistance in Lentil. Frontiers in Plant Science. 12: 703283. PMID 34539696 DOI: 10.3389/fpls.2021.703283   
2021 Domené S, Scaglia PA, Gutiérrez ML, Domené HM. Applying Bioinformatic Platforms, In Vitro, and In Vivo Functional Assays in the Characterization of Genetic Variants in the GH/IGF Pathway Affecting Growth and Development. Cells. 10. PMID 34440832 DOI: 10.3390/cells10082063   
2021 Galatolo D, De Michele G, Silvestri G, Leuzzi V, Casali C, Musumeci O, Antenora A, Astrea G, Barghigiani M, Battini R, Battisti C, Caputi C, Cioffi E, De Michele G, Dotti MT, et al. NGS in Hereditary Ataxia: When Rare Becomes Frequent. International Journal of Molecular Sciences. 22. PMID 34445196 DOI: 10.3390/ijms22168490   
2021 Morton SU, Quiat D, Seidman JG, Seidman CE. Genomic frontiers in congenital heart disease. Nature Reviews. Cardiology. PMID 34272501 DOI: 10.1038/s41569-021-00587-4