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J.J. Emerson - Publications

Affiliations: 
Integrative Biology University of California, Berkeley, Berkeley, CA 
 Ecology and Evolutionary Biology University of California, Irvine, Irvine, CA 
Area:
population genetics, genomics, molecular evolution, bioinformatics
Website:
https://ccbs.uci.edu/team/james-jordan-emerson/

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kou Y, Liao Y, Toivainen T, Lv Y, Tian X, Emerson JJ, Gaut BS, Zhou Y. Evolutionary genomics of structural variation in Asian rice (Oryza sativa) domestication. Molecular Biology and Evolution. PMID 32681796 DOI: 10.1093/Molbev/Msaa185  0.48
2020 Heras J, Chakraborty M, Emerson JJ, German DP. Genomic and biochemical evidence of dietary adaptation in a marine herbivorous fish. Proceedings. Biological Sciences. 287: 20192327. PMID 32070255 DOI: 10.1098/Rspb.2019.2327  0.56
2019 Chakraborty M, Emerson JJ, Macdonald SJ, Long AD. Structural variants exhibit widespread allelic heterogeneity and shape variation in complex traits. Nature Communications. 10: 4872. PMID 31653862 DOI: 10.1038/S41467-019-12884-1  0.56
2018 Zhang X, Emerson JJ. Inferring Compensatory Evolution of cis- and trans-Regulatory Variation. Trends in Genetics : Tig. PMID 30503570 DOI: 10.1016/J.Tig.2018.11.003  1
2018 Solares EA, Chakraborty M, Miller DE, Kalsow S, Hall K, Perera AG, Emerson JJ, Hawley RS. Rapid Low-Cost Assembly of the Reference Genome Using Low-Coverage, Long-Read Sequencing. G3 (Bethesda, Md.). PMID 30018084 DOI: 10.1534/G3.118.200162  0.56
2017 Chakraborty M, VanKuren NW, Zhao R, Zhang X, Kalsow S, Emerson JJ. Hidden genetic variation shapes the structure of functional elements in Drosophila. Nature Genetics. PMID 29255259 DOI: 10.1038/S41588-017-0010-Y  1
2017 Long M, Emerson JJ. Meiotic Sex Chromosome Inactivation: Compensation by Gene Traffic. Current Biology : Cb. 27: R659-R661. PMID 28697367 DOI: 10.1016/J.Cub.2017.05.077  0.96
2016 Chakraborty M, Baldwin-Brown JG, Long AD, Emerson JJ. Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage. Nucleic Acids Research. PMID 27458204 DOI: 10.1093/Nar/Gkw654  0.56
2015 Henderson KL, Müller TA, Hausinger RP, Emerson JP. Calorimetric assessment of Fe(2+) binding to α-ketoglutarate/taurine dioxygenase: ironing out the energetics of metal coordination by the 2-His-1-carboxylate facial triad. Inorganic Chemistry. 54: 2278-83. PMID 25668068 DOI: 10.1021/Ic502881Q  0.48
2015 Gittner LS, Husaini BA, Hull PC, Emerson JS, Tropez-Sims S, Reece MC, Zoorob R, Levine RS. Use of six sigma for eliminating missed opportunities for prevention services. Journal of Nursing Care Quality. 30: 254-60. PMID 25629453 DOI: 10.1097/Ncq.0000000000000113  0.64
2015 Kacker M, Dant RP, Emerson J, Coughlan AT. How firm strategies impact size of partner-based retail networks: Evidence from franchising Journal of Small Business Management. DOI: 10.1111/Jsbm.12155  0.64
2015 Rubele S, Girardi L, Kerber L, Cioni MRL, Piatti AE, Zaggia S, Bekki K, Bressan A, Clementini G, De Grijs R, Emerson JP, Groenewegen MAT, Ivanov VD, Marconi M, Marigo P, et al. The VMC survey - XIV: First results on the look-back time star formation rate tomography of the small magellanic cloud Monthly Notices of the Royal Astronomical Society. 449: 639-661. DOI: 10.1093/Mnras/Stv141  0.48
2015 Sutherland W, Emerson J, Dalton G, Atad-Ettedgui E, Beard S, Bennett R, Bezawada N, Born A, Caldwell M, Clark P, Craig S, Henry D, Jeffers P, Little B, McPherson A, et al. The Visible and Infrared Survey Telescope for Astronomy (VISTA): Design, technical overview, and performance Astronomy and Astrophysics. 575. DOI: 10.1051/0004-6361/201424973  0.64
2015 Perera GS, Lacour A, Zhou Y, Henderson KL, Zou S, Perez F, Emerson JP, Zhang D. Iodide-induced organothiol desorption and photochemical reaction, gold nanoparticle (AuNP) fusion, and SERS signal reduction in organothiol-containing aunp aggregates Journal of Physical Chemistry C. 119: 4261-4267. DOI: 10.1021/Jp512168Z  0.48
2015 Annabestani R, Cory DG, Emerson J. Quantum model of spin noise Journal of Magnetic Resonance. 252: 94-102. DOI: 10.1016/j.jmr.2015.01.010  0.64
2015 Emerson JS, Towns DR, Jones JL, Cain VA, Hull PC. Racial/ethnic and weight status differences in food preparation among WIC participants Journal of Health Care For the Poor and Underserved. 26: 335-344.  0.64
2015 Emerson JE, Bollens SM. Open accessseasonal dynamics of zooplankton in Columbia-Snake river reservoirs, with special emphasis on the invasive copepod Pseudodiaptomus forbesi Aquatic Invasions. 10: 25-40.  0.52
2014 Howard M, Wallman J, Veitch V, Emerson J. Contextuality supplies the 'magic' for quantum computation. Nature. 510: 351-5. PMID 24919152 DOI: 10.1038/Nature13460  0.64
2014 Zubaran C, Zolfaghari E, Foresti K, Emerson J, Sud R, Surjadi J. A validation study of the English version of the AlQol 9 to measure quality of life American Journal of Drug and Alcohol Abuse. 40: 131-136. PMID 24588420 DOI: 10.3109/00952990.2013.877919  0.36
2014 Shehzad Z, Kelly C, Reiss PT, Cameron Craddock R, Emerson JW, McMahon K, Copland DA, Castellanos FX, Milham MP. A multivariate distance-based analytic framework for connectome-wide association studies. Neuroimage. 93: 74-94. PMID 24583255 DOI: 10.1016/J.Neuroimage.2014.02.024  0.44
2014 Zhou YE, Emerson JS, Levine RS, Kihlberg CJ, Hull PC. Childhood obesity prevention interventions in childcare settings: Systematic review of randomized and nonrandomized controlled trials American Journal of Health Promotion. 28: e92-e103. PMID 24200332 DOI: 10.4278/Ajhp.121129-Lit-579  0.64
2014 Zhou YE, Emerson JS, Husaini BA, Hull PC. Association of infant feeding with adiposity in early childhood in a wic sample Journal of Health Care For the Poor and Underserved. 25: 1542-1551. DOI: 10.1353/hpu.2014.0181  0.64
2014 Vylegzhanina V, Schmidt DC, Hull P, Emerson JS, Quirk ME, Mulvaney S. Helping children eat well via mobile software technologies Mobiledeli 2014 - Proceedings of the 2nd International Workshop On Mobile Development Lifecycle, Part of Splash 2014. 9-16. DOI: 10.1145/2688412.2688413  0.64
2014 Khadavi MJ, Alm JC, Emerson JA. Complex regional pain syndrome in a young athlete with von willebrand disease Pain Medicine (United States). 15: 1011-1014. DOI: 10.1111/pme.12428  0.92
2014 Ripepi V, Marconi M, Moretti MI, Clementini G, Cioni MRL, Grijs Rd, Emerson JP, Groenewegen MAT, Ivanov VD, Oliveira JM. The VMC survey-VIII. first results for anomalous cepheids* Monthly Notices of the Royal Astronomical Society. 437: 2307-2319. DOI: 10.1093/Mnras/Stt2047  0.48
2014 Veitch V, Hamed Mousavian SA, Gottesman D, Emerson J. The resource theory of stabilizer quantum computation New Journal of Physics. 16. DOI: 10.1088/1367-2630/16/1/013009  0.64
2014 Li C, De Grijs R, Deng L, Rubele S, Wang C, Bekki K, Cioni MRL, Clementini G, Emerson J, For BQ, Girardi L, Groenewegen MAT, Guandalini R, Gullieuszik M, Marconi M, et al. The VMC survey. XI. Radial stellar population gradients in the galactic globular cluster 47 Tucanae Astrophysical Journal. 790. DOI: 10.1088/0004-637X/790/1/35  0.64
2014 Emerson J, Hill B. Gender differences in competition: Running performance in 1,500 meter tournaments Eastern Economic Journal. 40: 499-517. DOI: 10.1057/Eej.2014.28  0.32
2014 Minniti D, Saito RK, Gonzalez OA, Zoccali M, Rejkuba M, Alonso-Garciá J, Benjamin R, Catelan M, Dékány I, Emerson JP, Hempel M, Lucas PW, Schultheis M. Milky Way demographics with the VVV survey: III. Evidence for a great dark lane in the 157 million star bulge color-magnitude diagram Astronomy and Astrophysics. 571. DOI: 10.1051/0004-6361/201424056  0.48
2014 Iodice E, Arnaboldi M, Rejkuba M, Neeser MJ, Greggio L, Gonzalez OA, Irwin M, Emerson JP. The near-infrared structure of the barred galaxy NGC 253 from VISTA Astronomy and Astrophysics. 567. DOI: 10.1051/0004-6361/201423480  0.48
2014 Greggio L, Rejkuba M, Gonzalez OA, Arnaboldi M, Iodice E, Irwin M, Neeser MJ, Emerson J. A panoramic VISTA of the stellar halo of NGC 253 Astronomy and Astrophysics. 562. DOI: 10.1051/0004-6361/201322759  0.64
2014 Catelan M, Minniti D, Lucas PW, Dékány I, Saito RK, Angeloni R, Alonso-García J, Hempel M, He?miniak K, Jordán A, Ramos RC, Navarrete C, Beamín JC, Rojas AF, Gran F, ... ... Emerson JP, et al. Stellar variability in the VVV survey: Overview and first results Proceedings of the International Astronomical Union. 9: 395-396. DOI: 10.1017/S1743921313014725  0.48
2014 O’Connell A, Emerson J. Not-for-profit tax reform in Australia: Opportunities and challenges Not-For-Profit Law: Theoretical and Comparative Perspectives. 276-294. DOI: 10.1017/CBO9781107282117.016  0.6
2014 Balachandran U, Lee TH, Park CY, Emerson JE, Picciolo JJ, Dorris SE. Dense cermet membranes for hydrogen separation Separation and Purification Technology. 121: 54-59. DOI: 10.1016/J.Seppur.2013.10.001  0.52
2014 Haq EU, Toolan DTW, Emerson JA, Epps TH, Howse JR, Dunbar ADF, Ebbens SJ. Real time laser interference microscopy for bar-spread polystyrene/ poly(methyl methacrylate) blends Journal of Polymer Science, Part B: Polymer Physics. 52: 985-992. DOI: 10.1002/polb.23513  0.32
2014 Keady P, Awerbuch J, Emerson J, Fierer N, Miller SL. Environmental, occupancy, and seasonal factors associated with the microorganisms found in single family residences Indoor Air 2014 - 13th International Conference On Indoor Air Quality and Climate. 250-257.  0.64
2013 Vicoso B, Emerson JJ, Zektser Y, Mahajan S, Bachtrog D. Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation. Plos Biology. 11: e1001643. PMID 24015111 DOI: 10.1371/Journal.Pbio.1001643  0.92
2013 Schaefke B, Emerson JJ, Wang TY, Lu MY, Hsieh LC, Li WH. Inheritance of gene expression level and selective constraints on trans- and cis-regulatory changes in yeast. Molecular Biology and Evolution. 30: 2121-33. PMID 23793114 DOI: 10.1093/Molbev/Mst114  0.92
2013 Song H, Weitz AC, Hendrich MP, Lewis EA, Emerson JP. Building reactive copper centers in human carbonic anhydrase II. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 18: 595-8. PMID 23744511 DOI: 10.1007/S00775-013-1009-1  0.48
2013 McLaughlin N, Ma Q, Emerson J, Malkasian DR, Martin NA. The extended subtemporal transtentorial approach: The impact of trochlear nerve dissection and tentorial incision Journal of Clinical Neuroscience. 20: 1139-1143. PMID 23743353 DOI: 10.1016/j.jocn.2012.11.006  0.6
2013 Emerson JF, Chang DB, McNaughton S, Jeong JS, Shung KK, Cerwin SA. Electromagnetic acoustic imaging Ieee Transactions On Ultrasonics, Ferroelectrics, and Frequency Control. 60: 364-372. PMID 23357910 DOI: 10.1109/Tuffc.2013.2572  0.44
2013 Sud R, Roy B, Emerson J, Hennessy A. Associations between family history of cardiovascular disease, knowledge of cardiovascular disease risk factors and health behaviours. Australian Journal of Primary Health. 19: 119-23. PMID 22951147 DOI: 10.1071/PY12010  0.36
2013 Khonsary S, Ma Q, Villablanca P, Emerson J, Malkasian D. Clinical functional anatomy of the pterygopalatine ganglion, cephalgia and related dysautonomias: A review Surgical Neurology International. 4: S422-S428. DOI: 10.4103/2152-7806.121628  0.64
2013 Kane MJ, Emerson JW, Weston S. Scalable strategies for computing with massive data Journal of Statistical Software. 55: 1-19. DOI: 10.18637/Jss.V055.I14  0.44
2013 Emerson J, Churcher N, Deaker C. From toy to tool: Extending tag clouds for software and information visualisation Proceedings of the Australian Software Engineering Conference, Aswec. 155-164. DOI: 10.1109/ASWEC.2013.27  0.64
2013 Ududec C, Wiebe N, Emerson J. Information-theoretic equilibration: The appearance of irreversibility under complex quantum dynamics Physical Review Letters. 111. DOI: 10.1103/PhysRevLett.111.080403  0.64
2013 Emerson JW, Green WA, Schloerke B, Crowley J, Cook D, Hofmann H, Wickham H. The generalized pairs plot Journal of Computational and Graphical Statistics. 22: 79-91. DOI: 10.1080/10618600.2012.694762  0.44
2013 Tatton BL, Van Loon JT, Cioni MR, Clementini G, Emerson JP, Girardi L, De Grijs R, Groenewegen MAT, Gullieuszik M, Ivanov VD, Moretti MI, Ripepi V, Rubele S. The VMC survey: VII. Reddening map of the 30 Doradus field and the structure of the cold interstellar medium Astronomy and Astrophysics. 554. DOI: 10.1051/0004-6361/201321209  0.48
2013 Ivanov VD, Minniti D, Hempel M, Kurtev R, Toledo I, Saito RK, Alonso-García J, Beamín JC, Borissova J, Catelan M, Chené AN, Emerson J, González OA, Lucas PW, Martín EL, et al. Discovery of new companions to high proper motion stars from the VVV survey Astronomy and Astrophysics. 560. DOI: 10.1051/0004-6361/201321045  0.64
2013 Soto M, Barbá R, Gunthardt G, Minniti D, Lucas P, Majaess D, Irwin M, Emerson JP, Gonzalez-Solares E, Hempel M, Saito RK, Gurovich S, Roman-Lopes A, Moni-Bidin C, Santucho MV, et al. Milky Way demographics with the VVV survey : II. Color transformations and near-infrared photometry for 136 million stars in the southern Galactic disk Astronomy and Astrophysics. 552. DOI: 10.1051/0004-6361/201220046  0.48
2013 Emerson JA, Toolan DTW, Howse JR, Furst EM, Epps TH. Determination of solvent-polymer and polymer-polymer flory-huggins interaction parameters for poly(3-hexylthiophene) via solvent vapor swelling Macromolecules. 46: 6533-6540. DOI: 10.1021/Ma400597J  0.32
2013 Hsu A, Lloyd A, Emerson JW. What progress have we made since Rio? Results from the 2012 Environmental Performance Index (EPI) and Pilot Trend EPI Environmental Science and Policy. 33: 171-185. DOI: 10.1016/J.Envsci.2013.05.011  0.44
2012 Pool JE, Corbett-Detig RB, Sugino RP, Stevens KA, Cardeno CM, Crepeau MW, Duchen P, Emerson JJ, Saelao P, Begun DJ, Langley CH. Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture. Plos Genetics. 8: e1003080. PMID 23284287 DOI: 10.1371/Journal.Pgen.1003080  0.92
2011 Cardoso-Moreira M, Emerson JJ, Clark AG, Long M. Drosophila duplication hotspots are associated with late-replicating regions of the genome. Plos Genetics. 7: e1002340. PMID 22072977 DOI: 10.1371/Journal.Pgen.1002340  0.92
2011 Nikaido M, Sasaki T, Emerson JJ, Aibara M, Mzighani SI, Budeba YL, Ngatunga BP, Iwata M, Abe Y, Li WH, Okada N. Genetically distinct coelacanth population off the northern Tanzanian coast. Proceedings of the National Academy of Sciences of the United States of America. 108: 18009-13. PMID 22025696 DOI: 10.1073/Pnas.1115675108  0.92
2010 Emerson JJ, Li WH. The genetic basis of evolutionary change in gene expression levels. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 2581-90. PMID 20643748 DOI: 10.1098/Rstb.2010.0005  0.92
2010 Emerson JJ, Hsieh LC, Sung HM, Wang TY, Huang CJ, Lu HH, Lu MY, Wu SH, Li WH. Natural selection on cis and trans regulation in yeasts. Genome Research. 20: 826-36. PMID 20445163 DOI: 10.1101/Gr.101576.109  0.92
2008 Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M. Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster. Science (New York, N.Y.). 320: 1629-31. PMID 18535209 DOI: 10.1126/Science.1158078  0.92
2005 Cowan AT, Bowman GR, Edwards KF, Emerson JJ, Turkewitz AP. Genetic, genomic, and functional analysis of the granule lattice proteins in Tetrahymena secretory granules. Molecular Biology of the Cell. 16: 4046-60. PMID 15958493 DOI: 10.1091/Mbc.E05-01-0028  0.92
2005 Chen Y, Emerson JJ, Martin TM. Evolutionary genomics: codon volatility does not detect selection. Nature. 433: E6-7; discussion E7-. PMID 15662371 DOI: 10.1038/Nature03223  0.92
2004 Betrán E, Emerson JJ, Kaessmann H, Long M. Sex chromosomes and male functions: where do new genes go? Cell Cycle (Georgetown, Tex.). 3: 873-5. PMID 15190200 DOI: 10.4161/Cc.3.7.960  0.96
2004 Wang W, Thornton K, Emerson JJ, Long M. Nucleotide variation and recombination along the fourth chromosome in Drosophila simulans. Genetics. 166: 1783-94. PMID 15126398 DOI: 10.1534/Genetics.166.4.1783  0.92
2004 Emerson JJ, Kaessmann H, Betrán E, Long M. Extensive gene traffic on the mammalian X chromosome. Science (New York, N.Y.). 303: 537-40. PMID 14739461 DOI: 10.1126/Science.1090042  0.96
2001 Bergelson J, Dwyer G, Emerson JJ. Models and data on plant-enemy coevolution. Annual Review of Genetics. 35: 469-99. PMID 11700291 DOI: 10.1146/Annurev.Genet.35.102401.090954  0.92
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