Christine G. Elsik - Publications

Affiliations: 
Texas A & M University, College Station, TX, United States 
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65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Triant DA, Walsh AT, Hartley GA, Petry B, Stegemiller MR, Nelson BM, McKendrick MM, Fuller EP, Cockett NE, Koltes JE, McKay SD, Green JA, Murdoch BM, Hagen DE, Elsik CG. AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 37460664 DOI: 10.1007/s00335-023-10008-1  0.544
2021 Walsh AT, Triant DA, Le Tourneau JJ, Shamimuzzaman M, Elsik CG. Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses. Nucleic Acids Research. PMID 34747465 DOI: 10.1093/nar/gkab1018  0.488
2021 Fouks B, Brand P, Nguyen HN, Herman J, Camara F, Ence D, Hagen D, Hoff KJ, Nachweide S, Romoth L, Walden KK, Guigo R, Stanke M, Narzisi G, Yandell M, ... ... Elsik CG, et al. The genomic basis of evolutionary differentiation among honey bees. Genome Research. PMID 33947700 DOI: 10.1101/gr.272310.120  0.425
2020 Shamimuzzaman M, Gardiner JM, Walsh AT, Triant DA, Le Tourneau JJ, Tayal A, Unni DR, Nguyen HN, Portwood JL, Cannon EKS, Andorf CM, Elsik CG. MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database. Frontiers in Plant Science. 11: 592730. PMID 33193550 DOI: 10.3389/fpls.2020.592730  0.463
2020 Driscoll TP, Verhoeve VI, Gillespie JJ, Johnston JS, Guillotte ML, Rennoll-Bankert KE, Rahman MS, Hagen D, Elsik CG, Macaluso KR, Azad AF. A chromosome-level assembly of the cat flea genome uncovers rampant gene duplication and genome size plasticity. Bmc Biology. 18: 70. PMID 32560686 DOI: 10.1186/S12915-020-00802-7  0.556
2020 Triant DA, Le Tourneau JJ, Diesh CM, Unni DR, Shamimuzzaman M, Walsh AT, Gardiner J, Goldkamp AK, Li Y, Nguyen HN, Roberts C, Zhao Z, Alexander LJ, Decker JE, Schnabel RD, ... ... Elsik CG, et al. Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome. Animal Genetics. PMID 32537769 DOI: 10.1111/Age.12962  0.583
2020 Rosen BD, Bickhart DM, Schnabel RD, Koren S, Elsik CG, Tseng E, Rowan TN, Low WY, Zimin A, Couldrey C, Hall R, Li W, Rhie A, Ghurye J, McKay SD, et al. De novo assembly of the cattle reference genome with single-molecule sequencing. Gigascience. 9. PMID 32191811 DOI: 10.1093/Gigascience/Giaa021  0.545
2019 Shamimuzzaman M, Le Tourneau JJ, Unni DR, Diesh CM, Triant DA, Walsh AT, Tayal A, Conant GC, Hagen DE, Elsik CG. Bovine Genome Database: new annotation tools for a new reference genome. Nucleic Acids Research. PMID 31647100 DOI: 10.1093/Nar/Gkz944  0.59
2019 Zhao Z, Meihls LN, Hibbard BE, Ji T, Elsik CG, Shelby KS. Differential gene expression in response to eCry3.1Ab ingestion in an unselected and eCry3.1Ab-selected western corn rootworm (Diabrotica virgifera virgifera LeConte) population. Scientific Reports. 9: 4896. PMID 30894586 DOI: 10.1038/S41598-019-41067-7  0.352
2019 Dunn NA, Unni DR, Diesh C, Munoz-Torres M, Harris NL, Yao E, Rasche H, Holmes IH, Elsik CG, Lewis SE. Apollo: Democratizing genome annotation. Plos Computational Biology. 15: e1006790. PMID 30726205 DOI: 10.1371/Journal.Pcbi.1006790  0.537
2018 Portwood JL, Woodhouse MR, Cannon EK, Gardiner JM, Harper LC, Schaeffer ML, Walsh JR, Sen TZ, Cho KT, Schott DA, Braun BL, Dietze M, Dunfee B, Elsik CG, Manchanda N, et al. MaizeGDB 2018: the maize multi-genome genetics and genomics database. Nucleic Acids Research. PMID 30407532 DOI: 10.1093/Nar/Gky1046  0.574
2018 Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C, Cannon S, Carson J, Condon B, Cooper L, Dunn N, ... Elsik CG, et al. AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database : the Journal of Biological Databases and Curation. 2018. PMID 30239679 DOI: 10.1093/Database/Bay088  0.358
2018 Elsik CG, Tayal A, Unni DR, Burns GW, Hagen DE. Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran Insects. Methods in Molecular Biology (Clifton, N.J.). 1757: 513-556. PMID 29761469 DOI: 10.1007/978-1-4939-7737-6_17  0.597
2018 Hagen DE, Unni DR, Tayal A, Burns GW, Elsik CG. Bovine Genome Database: Tools for Mining the Bos taurus Genome. Methods in Molecular Biology (Clifton, N.J.). 1757: 211-249. PMID 29761461 DOI: 10.1007/978-1-4939-7737-6_9  0.603
2017 Chen Z, Hagen DE, Ji T, Elsik CG, Rivera RM. Global misregulation of genes largely uncoupled to DNA methylome epimutations characterizes a congenital overgrowth syndrome. Scientific Reports. 7: 12667. PMID 28978943 DOI: 10.1038/S41598-017-13012-Z  0.337
2017 Dunn NA, Munoz-Torres MC, Unni D, Rasche E, Bretaudeau A, Yao E, Holmes I, Elsik CG, Lewis SE. Apollo: collaborative and scalable manual genome annotation F1000research. 6. DOI: 10.7490/F1000Research.1114357.1  0.562
2016 Chen Z, Hagen DE, Wang J, Elsik CG, Ji T, Siqueira LG, Hansen PJ, Rivera RM. Global assessment of imprinted gene expression in the bovine conceptus by next generation sequencing. Epigenetics. 0. PMID 27245094 DOI: 10.1080/15592294.2016.1184805  0.452
2016 Buels R, Yao E, Diesh CM, Hayes RD, Munoz-Torres M, Helt G, Goodstein DM, Elsik CG, Lewis SE, Stein L, Holmes IH. JBrowse: a dynamic web platform for genome visualization and analysis. Genome Biology. 17: 66. PMID 27072794 DOI: 10.1186/S13059-016-0924-1  0.479
2016 Dunn N, Munoz-Torres M, Diesh C, Unni D, Rasche E, Yao E, Holmes I, Elsik C, Lewis S. Apollo: collaborative manual annotation for genomic sequencing projects F1000research. 5. DOI: 10.7490/F1000Research.1112335.1  0.52
2016 Hagen DE, Unni DR, Elsik CG. P1042 Combining RNA sequencing technologies to annotate the bovine genome. Journal of Animal Science. 94: 34-35. DOI: 10.2527/Jas2016.94Supplement434B  0.467
2016 Elsik CG, Unni DR, Tayal A, Diesh CM, Hagen DE. P1038 BovineMine: A bovine genome data mining warehouse Journal of Animal Science. 94: 33-33. DOI: 10.2527/Jas2016.94Supplement433X  0.476
2015 Elsik CG, Tayal A, Diesh CM, Unni DR, Emery ML, Nguyen HN, Hagen DE. Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine. Nucleic Acids Research. PMID 26578564 DOI: 10.1093/Nar/Gkv1208  0.572
2015 Elsik CG, Unni DR, Diesh CM, Tayal A, Emery ML, Nguyen HN, Hagen DE. Bovine Genome Database: new tools for gleaning function from the Bos taurus genome. Nucleic Acids Research. PMID 26481361 DOI: 10.1093/Nar/Gkv1077  0.613
2015 Saritas-Yildirim B, Childers CP, Elsik CG, Silva EM. Identification of REST targets in the Xenopus tropicalis genome. Bmc Genomics. 16: 380. PMID 25971704 DOI: 10.1186/S12864-015-1591-4  0.446
2015 Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, et al. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology. 16: 76. PMID 25908251 DOI: 10.1186/S13059-015-0623-3  0.436
2015 Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, et al. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology. 16: 57. PMID 25854118 DOI: 10.1186/S13059-015-0622-4  0.508
2015 Chen Z, Hagen DE, Elsik CG, Ji T, Morris CJ, Moon LE, Rivera RM. Characterization of global loss of imprinting in fetal overgrowth syndrome induced by assisted reproduction. Proceedings of the National Academy of Sciences of the United States of America. 112: 4618-23. PMID 25825726 DOI: 10.1073/Pnas.1422088112  0.356
2014 Terrapon N, Li C, Robertson HM, Ji L, Meng X, Booth W, Chen Z, Childers CP, Glastad KM, Gokhale K, Gowin J, Gronenberg W, Hermansen RA, Hu H, Hunt BG, ... ... Elsik CG, et al. Molecular traces of alternative social organization in a termite genome. Nature Communications. 5: 3636. PMID 24845553 DOI: 10.1038/Ncomms4636  0.492
2014 Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R, et al. Finding the missing honey bee genes: lessons learned from a genome upgrade. Bmc Genomics. 15: 86. PMID 24479613 DOI: 10.1186/1471-2164-15-86  0.623
2013 Lee E, Helt GA, Reese JT, Munoz-Torres MC, Childers CP, Buels RM, Stein L, Holmes IH, Elsik CG, Lewis SE. Web Apollo: a web-based genomic annotation editing platform. Genome Biology. 14: R93. PMID 24000942 DOI: 10.1186/Gb-2013-14-8-R93  0.551
2013 Evans JD, Brown SJ, Hackett KJJ, Robinson G, Richards S, Lawson D, Elsik C, Coddington J, Edwards O, Emrich S, Gabaldon T, Goldsmith M, Hanes G, Misof B, Muñoz-Torres M, et al. The i5K initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment Journal of Heredity. 104: 595-600. PMID 23940263 DOI: 10.1093/Jhered/Est050  0.489
2013 Poelchau MF, Reynolds JA, Elsik CG, Denlinger DL, Armbruster PA. RNA-Seq reveals early distinctions and late convergence of gene expression between diapause and quiescence in the Asian tiger mosquito, Aedes albopictus. The Journal of Experimental Biology. 216: 4082-90. PMID 23913949 DOI: 10.1242/Jeb.089508  0.384
2013 Li-Byarlay H, Li Y, Stroud H, Feng S, Newman TC, Kaneda M, Hou KK, Worley KC, Elsik CG, Wickline SA, Jacobsen SE, Ma J, Robinson GE. RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee. Proceedings of the National Academy of Sciences of the United States of America. 110: 12750-5. PMID 23852726 DOI: 10.1073/Pnas.1310735110  0.354
2013 Poelchau MF, Reynolds JA, Denlinger DL, Elsik CG, Armbruster PA. Transcriptome sequencing as a platform to elucidate molecular components of the diapause response in the Asian tiger mosquito, Aedes albopictus. Physiological Entomology. 38: 173-181. PMID 23833391 DOI: 10.1111/Phen.12016  0.469
2013 Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, ... ... Elsik CG, et al. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Research. 23: 1235-47. PMID 23636946 DOI: 10.1101/Gr.155408.113  0.546
2013 Poelchau MF, Reynolds JA, Elsik CG, Denlinger DL, Armbruster PA. Deep sequencing reveals complex mechanisms of diapause preparation in the invasive mosquito, Aedes albopictus. Proceedings. Biological Sciences / the Royal Society. 280: 20130143. PMID 23516243 DOI: 10.1098/Rspb.2013.0143  0.403
2012 Cornman RS, Bennett AK, Murray KD, Evans JD, Elsik CG, Aronstein K. Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis. Bmc Genomics. 13: 285. PMID 22747707 DOI: 10.1186/1471-2164-13-285  0.431
2011 Poelchau MF, Reynolds JA, Denlinger DL, Elsik CG, Armbruster PA. A de novo transcriptome of the Asian tiger mosquito, Aedes albopictus, to identify candidate transcripts for diapause preparation. Bmc Genomics. 12: 619. PMID 22185595 DOI: 10.1186/1471-2164-12-619  0.388
2011 Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, Bouffard P, Caldera EJ, Cash E, Cavanaugh A, Denas O, Elhaik E, Favé MJ, Gadau J, Gibson JD, ... ... Elsik CG, et al. The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. Plos Genetics. 7: e1002007. PMID 21347285 DOI: 10.1371/Journal.Pgen.1002007  0.577
2011 Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, Yandell M, Holt C, Hu H, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, et al. Draft genome of the red harvester ant Pogonomyrmex barbatus. Proceedings of the National Academy of Sciences of the United States of America. 108: 5667-72. PMID 21282651 DOI: 10.1073/Pnas.1007901108  0.6
2011 Smith CD, Zimin A, Holt C, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Fave MJ, Fernandes V, Gadau J, Gibson JD, Graur D, et al. Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proceedings of the National Academy of Sciences of the United States of America. 108: 5673-8. PMID 21282631 DOI: 10.1073/Pnas.1008617108  0.623
2011 Childers CP, Reese JT, Sundaram JP, Vile DC, Dickens CM, Childs KL, Salih H, Bennett AK, Hagen DE, Adelson DL, Elsik CG. Bovine Genome Database: integrated tools for genome annotation and discovery. Nucleic Acids Research. 39: D830-4. PMID 21123190 DOI: 10.1093/Nar/Gkq1235  0.599
2011 Munoz-Torres MC, Reese JT, Childers CP, Bennett AK, Sundaram JP, Childs KL, Anzola JM, Milshina N, Elsik CG. Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera. Nucleic Acids Research. 39: D658-62. PMID 21071397 DOI: 10.1093/Nar/Gkq1145  0.583
2010 Garbe JR, Elsik CG, Antoniou E, Reecy JM, Clark KJ, Venkatraman A, Kim JW, Schnabel RD, Michael Dickens C, Wolfinger RD, Fahrenkrug SC, Taylor JF. Development and application of bovine and porcine oligonucleotide arrays with protein-based annotation. Journal of Biomedicine & Biotechnology. 2010: 453638. PMID 21197395 DOI: 10.1155/2010/453638  0.659
2010 Reese JT, Childers CP, Sundaram JP, Dickens CM, Childs KL, Vile DC, Elsik CG. Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome. Bmc Genomics. 11: 645. PMID 21092105 DOI: 10.1186/1471-2164-11-645  0.591
2010 Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, et al. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle. Proceedings of the National Academy of Sciences of the United States of America. 107: 12168-73. PMID 20566863 DOI: 10.1073/Pnas.1003379107  0.541
2010 Elsik CG. The pea aphid genome sequence brings theories of insect defense into question. Genome Biology. 11: 106. PMID 20236492 DOI: 10.1186/Gb-2010-11-2-106  0.531
2010 Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, ... Elsik CG, et al. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (New York, N.Y.). 327: 343-8. PMID 20075255 DOI: 10.1126/Science.1178028  0.531
2010 Munoz-Torres MC, Reese JT, Childers CP, Bennett AK, Sundaram JP, Vile DC, Elsik CG. The Hymenoptera Genome Database Nature Precedings. DOI: 10.1038/Npre.2010.5182.1  0.556
2009 Satterfield MC, Song G, Kochan KJ, Riggs PK, Simmons RM, Elsik CG, Adelson DL, Bazer FW, Zhou H, Spencer TE. Discovery of candidate genes and pathways in the endometrium regulating ovine blastocyst growth and conceptus elongation. Physiological Genomics. 39: 85-99. PMID 19690047 DOI: 10.1152/Physiolgenomics.00001.2009  0.313
2009 Tellam RL, Lemay DG, Van Tassell CP, Lewin HA, Worley KC, Elsik CG. Unlocking the bovine genome. Bmc Genomics. 10: 193. PMID 19393070 DOI: 10.1186/1471-2164-10-193  0.577
2009 Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (New York, N.Y.). 324: 522-8. PMID 19390049 DOI: 10.1126/Science.1169588  0.604
2008 Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Beeman RW, Brown SJ, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, ... ... Elsik CG, et al. The genome of the model beetle and pest Tribolium castaneum. Nature. 452: 949-55. PMID 18362917 DOI: 10.1038/Nature06784  0.496
2007 Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG. Computational and transcriptional evidence for microRNAs in the honey bee genome. Genome Biology. 8: R97. PMID 17543122 DOI: 10.1186/Gb-2007-8-6-R97  0.355
2007 Robertson HM, Reese JT, Milshina NV, Agarwala R, Solignac M, Walden KK, Elsik CG. Manual superscaffolding of honey bee (Apis mellifera) chromosomes 12-16: implications for the draft genome assembly version 4, gene annotation, and chromosome structure. Insect Molecular Biology. 16: 401-10. PMID 17506851 DOI: 10.1111/J.1365-2583.2007.00738.X  0.417
2007 Elsik CG, Mackey AJ, Reese JT, Milshina NV, Roos DS, Weinstock GM. Creating a honey bee consensus gene set. Genome Biology. 8: R13. PMID 17241472 DOI: 10.1186/Gb-2007-8-1-R13  0.397
2006 Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, ... ... Elsik CG, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science (New York, N.Y.). 314: 941-52. PMID 17095691 DOI: 10.1126/Science.1133609  0.601
2006 Dearden PK, Wilson MJ, Sablan L, Osborne PW, Havler M, McNaughton E, Kimura K, Milshina NV, Hasselmann M, Gempe T, Schioett M, Brown SJ, Elsik CG, Holland PW, Kadowaki T, et al. Patterns of conservation and change in honey bee developmental genes. Genome Research. 16: 1376-84. PMID 17065607 DOI: 10.1101/Gr.5108606  0.441
2006 Elsik CG, Worley KC, Zhang L, Milshina NV, Jiang H, Reese JT, Childs KL, Venkatraman A, Dickens CM, Weinstock GM, Gibbs RA. Community annotation: procedures, protocols, and supporting tools. Genome Research. 16: 1329-33. PMID 17065605 DOI: 10.1101/Gr.5580606  0.646
2006 Krutovsky KV, Elsik CG, Matvienko M, Kozik A, Neale DB. Conserved ortholog sets in forest trees Tree Genetics and Genomes. 3: 61-70. DOI: 10.1007/S11295-006-0052-2  0.438
2005 Bae K, Mallick BK, Elsik CG. Prediction of protein interdomain linker regions by a hidden Markov model. Bioinformatics (Oxford, England). 21: 2264-70. PMID 15746283 DOI: 10.1093/Bioinformatics/Bti363  0.31
2001 Elsik CG, Williams CG. Low-copy microsatellite recovery from a conifer genome Theoretical and Applied Genetics. 103: 1189-1195. DOI: 10.1007/S001220100725  0.528
2000 Elsik CG, Williams CG. Retroelements contribute to the excess low-copy-number DNA in pine Molecular and General Genetics. 264: 47-55. PMID 11016832  0.347
2000 Paterson AH, Bowers JE, Burow MD, Draye X, Elsik CG, Jiang CX, Katsar CS, Lan TH, Lin YR, Ming R, Wright RJ. Comparative genomics of plant chromosomes Plant Cell. 12: 1523-1539. PMID 11006329 DOI: 10.1105/Tpc.12.9.1523  0.503
2000 Elsik CG, Minihan VT, Hall SE, Scarpa AM, Williams CG. Low-copy microsatellite markers for Pinus taeda L. Genome / National Research Council Canada = Gã©Nome / Conseil National De Recherches Canada. 43: 550-5. PMID 10902720 DOI: 10.1139/Gen-43-3-550  0.391
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