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Ryan P. Kelly, Ph.D. - Publications

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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Duprey J, Gallego R, Klinger T, Kelly RP. Environmental DNA reveals patterns of biological invasion in an inland sea. Plos One. 18: e0281525. PMID 38150426 DOI: 10.1371/journal.pone.0281525  0.343
2023 Andruszkiewicz Allan E, Kelly RP, D'Agnese ER, Garber-Yonts MN, Shaffer MR, Gold ZJ, Shelton AO. Quantifying impacts of an environmental intervention using environmental DNA. Ecological Applications : a Publication of the Ecological Society of America. e2914. PMID 37641194 DOI: 10.1002/eap.2914  0.337
2022 Shelton AO, Ramón-Laca A, Wells A, Clemons J, Chu D, Feist BE, Kelly RP, Parker-Stetter SL, Thomas R, Nichols KM, Park L. Environmental DNA provides quantitative estimates of Pacific hake abundance and distribution in the open ocean. Proceedings. Biological Sciences. 289: 20212613. PMID 35317670 DOI: 10.1098/rspb.2021.2613  0.328
2020 Gallego R, Jacobs-Palmer E, Cribari K, Kelly RP. Environmental DNA metabarcoding reveals winners and losers of global change in coastal waters. Proceedings. Biological Sciences. 287: 20202424. PMID 33290686 DOI: 10.1098/rspb.2020.2424  0.306
2020 Jacobs-Palmer E, Gallego R, Ramón-Laca A, Kunselman E, Cribari K, Horwith M, Kelly RP. A halo of reduced dinoflagellate abundances in and around eelgrass beds. Peerj. 8: e8869. PMID 32292651 DOI: 10.7717/Peerj.8869  0.411
2020 Djurhuus A, Closek CJ, Kelly RP, Pitz KJ, Michisaki RP, Starks HA, Walz KR, Andruszkiewicz EA, Olesin E, Hubbard K, Montes E, Otis D, Muller-Karger FE, Chavez FP, Boehm AB, et al. Environmental DNA reveals seasonal shifts and potential interactions in a marine community. Nature Communications. 11: 254. PMID 31937756 DOI: 10.1038/S41467-019-14105-1  0.551
2020 Gold Z, Wall AR, Curd EE, Kelly RP, Pentcheff ND, Ripma L, Barber PH, Wetzer R. eDNA metabarcoding bioassessment of endangered fairy shrimp (Branchinecta spp.) Conservation Genetics Resources. 12: 685-690. DOI: 10.1007/S12686-020-01161-9  0.57
2019 Kelly RP, Shelton AO, Gallego R. Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies. Scientific Reports. 9: 12133. PMID 31431641 DOI: 10.1038/S41598-019-48546-X  0.427
2019 Lebon KM, Kelly RP. Evaluating alternatives to reduce whale entanglements in commercial Dungeness Crab fishing gear Global Ecology and Conservation. 18. DOI: 10.1016/J.Gecco.2019.E00608  0.384
2019 Shelton AO, Kelly RP, O'Donnell JL, Park L, Schwenke P, Greene C, Henderson RA, Beamer EM. Environmental DNA provides quantitative estimates of a threatened salmon species Biological Conservation. 237: 383-391. DOI: 10.1016/J.Biocon.2019.07.003  0.458
2018 Hart CJ, Kelly RP, Pearson SF. Will the California Current lose its nesting Tufted Puffins? Peerj. 6: e4519. PMID 29593940 DOI: 10.7717/Peerj.4519  0.387
2018 Kelly RP, Gallego R, Jacobs-Palmer E. The effect of tides on nearshore environmental DNA. Peerj. 6: e4521. PMID 29576982 DOI: 10.7717/Peerj.4521  0.407
2018 Lee TS, Toft JD, Cordell JR, Dethier MN, Adams JW, Kelly RP. Quantifying the effectiveness of shoreline armoring removal on coastal biota of Puget Sound. Peerj. 6: e4275. PMID 29492331 DOI: 10.7717/Peerj.4275  0.691
2018 Tillotson MD, Kelly RP, Duda JJ, Hoy M, Kralj J, Quinn TP. Concentrations of environmental DNA (eDNA) reflect spawning salmon abundance at fine spatial and temporal scales Biological Conservation. 220: 1-11. DOI: 10.1016/J.Biocon.2018.01.030  0.445
2017 O'Donnell JL, Kelly RP, Shelton AO, Samhouri JF, Lowell NC, Williams GD. Spatial distribution of environmental DNA in a nearshore marine habitat. Peerj. 5: e3044. PMID 28265513 DOI: 10.7717/Peerj.3044  0.417
2017 Pitz K, Closek C, Djurhuus A, Michisaki R, Walz K, Boehm A, Breitbart M, Kelly R, Chavez F. Rewards and Challenges of eDNA Sequencing with Multiple Genetic Markers for Marine Observation Programs Proceedings of Tdwg. 1: e20548. DOI: 10.3897/TDWGPROCEEDINGS.1.20548  0.435
2017 Kelly RP, Closek CJ, O'Donnell JL, Kralj JE, Shelton AO, Samhouri JF. Genetic and Manual Survey Methods Yield Different and Complementary Views of an Ecosystem Frontiers in Marine Science. 3. DOI: 10.3389/Fmars.2016.00283  0.423
2016 Shelton AO, O'Donnell JL, Samhouri JF, Lowell N, Williams GD, Kelly RP. A framework for inferring biological communities from environmental DNA. Ecological Applications : a Publication of the Ecological Society of America. 26: 1645-1659. PMID 27755698 DOI: 10.1890/15-1733.1  0.383
2016 Kelly RP, O'Donnell JL, Lowell NC, Shelton AO, Samhouri JF, Hennessey SM, Feist BE, Williams GD. Genetic signatures of ecological diversity along an urbanization gradient. Peerj. 4: e2444. PMID 27672503 DOI: 10.7717/Peerj.2444  0.429
2016 Albright R, Anthony KR, Baird M, Beeden R, Byrne M, Collier C, Dove S, Fabricius K, Hoegh-Guldberg O, Kelly RP, Lough J, Mongin M, Munday PL, Pears RJ, Russell BD, et al. Ocean acidification: Linking science to management solutions using the Great Barrier Reef as a case study. Journal of Environmental Management. 182: 641-650. PMID 27564868 DOI: 10.1016/J.Jenvman.2016.07.038  0.336
2016 O'Donnell JL, Kelly RP, Lowell NC, Port JA. Indexed PCR Primers Induce Template-Specific Bias in Large-Scale DNA Sequencing Studies. Plos One. 11: e0148698. PMID 26950069 DOI: 10.1371/Journal.Pone.0148698  0.335
2016 Kelly RP. Making environmental DNA count. Molecular Ecology Resources. 16: 10-2. PMID 26768195 DOI: 10.1111/1755-0998.12455  0.416
2016 Battista W, Kelly RP, Erickson A, Fujita R. A Comprehensive Method for Assessing Marine Resource Governance: Case Study in Kāne‘ohe Bay, Hawai‘i Coastal Management. 44: 295-332. DOI: 10.1080/08920753.2016.1135277  0.348
2016 Freeman MC, Whiting L, Kelly RP. Assessing potential spatial and temporal conflicts in Washington's marine waters Marine Policy. 70: 137-144. DOI: 10.1016/J.Marpol.2016.04.050  0.344
2016 Lowell N, Kelly RP. Evaluating agency use of "best available science" under the United States Endangered Species Act Biological Conservation. 196: 53-59. DOI: 10.1016/J.Biocon.2016.02.003  0.388
2015 Port JA, O'Donnell JL, Romero-Maraccini OC, Leary PR, Litvin SY, Nickols KJ, Yamahara KM, Kelly RP. Assessing Vertebrate Biodiversity in a Kelp Forest Ecosystem using Environmental DNA. Molecular Ecology. PMID 26586544 DOI: 10.1111/Mec.13481  0.456
2015 Marshall KN, Stier AC, Samhouri JF, Kelly RP, Ward EJ. Conservation Challenges of Predator Recovery Conservation Letters. DOI: 10.1111/Conl.12186  0.387
2015 Kelly RP, Erickson AL, Mease LA, Battista W, Kittinger JN, Fujita R. Embracing thresholds for better environmental management Philosophical Transactions of the Royal Society B: Biological Sciences. 370: 1-10. DOI: 10.1098/Rstb.2013.0276  0.317
2014 Kelly RP, Port JA, Yamahara KM, Martone RG, Lowell N, Thomsen PF, Mach ME, Bennett M, Prahler E, Caldwell MR, Crowder LB. Environmental monitoring. Harnessing DNA to improve environmental management. Science (New York, N.Y.). 344: 1455-6. PMID 24970068 DOI: 10.1126/Science.1251156  0.394
2014 Kelly RP, Port JA, Yamahara KM, Crowder LB. Using environmental DNA to census marine fishes in a large mesocosm. Plos One. 9: e86175. PMID 24454960 DOI: 10.1371/Journal.Pone.0086175  0.454
2014 Kelly RP, Cooley SR, Klinger T. Narratives can motivate environmental action: the Whiskey Creek ocean acidification story. Ambio. 43: 592-9. PMID 24081705 DOI: 10.1007/S13280-013-0442-2  0.321
2014 Kelly RP. Will More, Better, Cheaper, and Faster Monitoring Improve Environmental Management? Environmental Law. 44: 1111. DOI: 10.2139/Ssrn.2408550  0.367
2014 Kelly RP, Erickson AL, Mease LA. How not to fall off a cliff, or, using tipping points to improve environmental management Ecology Law Quarterly. 41: 843-886. DOI: 10.15779/Z38Fp1H  0.337
2014 Strong AL, Kroeker KJ, Teneva LT, Mease LA, Kelly RP. Ocean acidification 2.0: Managing our Changing Coastal Ocean Chemistry Bioscience. 64: 581-592. DOI: 10.1093/Biosci/Biu072  0.347
2013 Billé R, Kelly R, Biastoch A, Harrould-Kolieb E, Herr D, Joos F, Kroeker K, Laffoley D, Oschlies A, Gattuso JP. Taking action against ocean acidification: a review of management and policy options. Environmental Management. 52: 761-79. PMID 23897413 DOI: 10.1007/S00267-013-0132-7  0.338
2011 Kelly RP, Foley MM, Fisher WS, Feely RA, Halpern BS, Waldbusser GG, Caldwell MR. Oceans. Mitigating local causes of ocean acidification with existing laws. Science (New York, N.Y.). 332: 1036-7. PMID 21617060 DOI: 10.1126/Science.1203815  0.305
2011 Barshis DJ, Sotka EE, Kelly RP, Sivasundar A, Menge BA, Barth JA, Palumbi SR. Castal upwelling is linked to temporal genetic variability in the acorn barnacle Balanus glandula Marine Ecology Progress Series. 439: 139-150. DOI: 10.3354/Meps09339  0.667
2010 Kelly RP, Oliver TA, Sivasundar A, Palumbi SR. A method for detecting population genetic structure in diverse, high gene-flow species. The Journal of Heredity. 101: 423-36. PMID 20219885 DOI: 10.1093/Jhered/Esq022  0.667
2010 Kelly RP, Palumbi SR. Genetic structure among 50 species of the northeastern Pacific rocky intertidal community. Plos One. 5: e8594. PMID 20062807 DOI: 10.1371/Journal.Pone.0008594  0.619
2009 Kelly RP, Palumbi SR. General-use polymerase chain reaction primers for amplification and direct sequencing of enolase, a single-copy nuclear gene, from different animal phyla. Molecular Ecology Resources. 9: 144-7. PMID 21564585 DOI: 10.1111/J.1755-0998.2008.02210.X  0.565
2008 Kelly RP, Eernisse DJ. Reconstructing a radiation: The chiton genus Mopalia in the north Pacific Invertebrate Systematics. 22: 17-28. DOI: 10.1071/Is06021  0.391
2007 Kelly RP, Eernisse DJ. Southern hospitality: a latitudinal gradient in gene flow in the marine environment. Evolution; International Journal of Organic Evolution. 61: 700-7. PMID 17348933 DOI: 10.1111/J.1558-5646.2007.00055.X  0.445
2007 Kelly RP, Sarkar IN, Eernisse DJ, DeSalle R. DNA barcoding using chitons (genus Mopalia): Barcoding Molecular Ecology Notes. 7: 177-183. DOI: 10.1111/j.1471-8286.2006.01641.x  0.41
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