| Year |
Citation |
Score |
| 2017 |
Young CP, Hillyer C, Hokamp K, Fitzpatrick DJ, Konstantinov NK, Welty JS, Ness SA, Werner-Washburne M, Fleming AB, Osley MA. Distinct histone methylation and transcription profiles are established during the development of cellular quiescence in yeast. Bmc Genomics. 18: 107. PMID 28122508 DOI: 10.1186/S12864-017-3509-9 |
0.32 |
|
| 2012 |
Werner-Washburne M, Roy S, Davidson GS. Aging and the survival of quiescent and non-quiescent cells in yeast stationary-phase cultures. Sub-Cellular Biochemistry. 57: 123-43. PMID 22094420 DOI: 10.1007/978-94-007-2561-4_6 |
0.625 |
|
| 2011 |
Roy S, Werner-Washburne M, Lane T. A multiple network learning approach to capture system-wide condition-specific responses. Bioinformatics (Oxford, England). 27: 1832-8. PMID 21551143 DOI: 10.1093/bioinformatics/btr270 |
0.521 |
|
| 2011 |
Davidson GS, Joe RM, Roy S, Meirelles O, Allen CP, Wilson MR, Tapia PH, Manzanilla EE, Dodson AE, Chakraborty S, Carter M, Young S, Edwards B, Sklar L, Werner-Washburne M. The proteomics of quiescent and nonquiescent cell differentiation in yeast stationary-phase cultures. Molecular Biology of the Cell. 22: 988-98. PMID 21289090 DOI: 10.1091/Mbc.E10-06-0499 |
0.753 |
|
| 2011 |
Harper JC, Lopez DM, Larkin EC, Economides MK, McIntyre SK, Alam TM, Tartis MS, Werner-Washburne M, Brinker CJ, Brozik SM, Wheeler DR. Encapsulation of S. cerevisiae in poly(glycerol) silicate derived matrices: Effect of matrix additives and cell metabolic phase on long-term viability and rate of gene expression Chemistry of Materials. 23: 2555-2564. DOI: 10.1021/Cm103525U |
0.357 |
|
| 2010 |
Werner-Washburne M, Keegstra K. l-Aspartate Transport into Pea Chloroplasts : Kinetic and Inhibitor Evidence for Multiple Transport Systems. Plant Physiology. 78: 221-7. PMID 16664220 DOI: 10.1104/Pp.78.2.221 |
0.53 |
|
| 2010 |
Cline K, Werner-Washburne M, Andrews J, Keegstra K. Thermolysin is a suitable protease for probing the surface of intact pea chloroplasts. Plant Physiology. 75: 675-8. PMID 16663686 DOI: 10.1104/Pp.75.3.675 |
0.54 |
|
| 2010 |
Werner-Washburne M, Cline K, Keegstra K. Analysis of pea chloroplast inner and outer envelope membrane proteins by two-dimensional gel electrophoresis and their comparison with stromal proteins. Plant Physiology. 73: 569-75. PMID 16663260 DOI: 10.1104/Pp.73.3.569 |
0.559 |
|
| 2009 |
Roy S, Plis S, Werner-Washburne M, Lane T. Scalable learning of large networks. Iet Systems Biology. 3: 404-13. PMID 21028930 DOI: 10.1049/Iet-Syb.2008.0161 |
0.574 |
|
| 2009 |
Roy S, Lane T, Werner-Washburne M. Learning structurally consistent undirected probabilistic graphical models. Proceedings of the ... International Conference On Machine Learning. International Conference On Machine Learning. 382: 905-912. PMID 20485538 DOI: 10.1145/1553374.1553490 |
0.495 |
|
| 2009 |
Roy S, Martinez D, Platero H, Lane T, Werner-Washburne M. Exploiting amino acid composition for predicting protein-protein interactions. Plos One. 4: e7813. PMID 19936254 DOI: 10.1371/Journal.Pone.0007813 |
0.572 |
|
| 2009 |
Li L, Lu Y, Qin LX, Bar-Joseph Z, Werner-Washburne M, Breeden LL. Budding yeast SSD1-V regulates transcript levels of many longevity genes and extends chronological life span in purified quiescent cells. Molecular Biology of the Cell. 20: 3851-64. PMID 19570907 DOI: 10.1091/Mbc.E09-04-0347 |
0.365 |
|
| 2009 |
Roy S, Lane T, Werner-Washburne M, Martinez D. Inference of functional networks of condition-specific response--a case study of quiescence in yeast. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 51-62. PMID 19209695 |
0.587 |
|
| 2008 |
Roy S, Werner-Washburne M, Lane T. A system for generating transcription regulatory networks with combinatorial control of transcription. Bioinformatics (Oxford, England). 24: 1318-20. PMID 18400774 DOI: 10.1093/Bioinformatics/Btn126 |
0.585 |
|
| 2008 |
Aragon AD, Rodriguez AL, Meirelles O, Roy S, Davidson GS, Tapia PH, Allen C, Joe R, Benn D, Werner-Washburne M. Characterization of differentiated quiescent and nonquiescent cells in yeast stationary-phase cultures. Molecular Biology of the Cell. 19: 1271-80. PMID 18199684 DOI: 10.1091/Mbc.E07-07-0666 |
0.739 |
|
| 2006 |
Roy S, Lane T, Allen C, Aragon AD, Werner-Washburne M. A hidden-state Markov model for cell population deconvolution. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 1749-74. PMID 17238843 DOI: 10.1089/Cmb.2006.13.1749 |
0.593 |
|
| 2006 |
Baca HK, Ashley C, Carnes E, Lopez D, Flemming J, Dunphy D, Singh S, Chen Z, Liu N, Fan H, López GP, Brozik SM, Werner-Washburne M, Brinker CJ. Cell-directed assembly of lipid-silica nanostructures providing extended cell viability. Science (New York, N.Y.). 313: 337-41. PMID 16857936 DOI: 10.1126/Science.1126590 |
0.365 |
|
| 2006 |
Wentzell PD, Karakach TK, Roy S, Martinez MJ, Allen CP, Werner-Washburne M. Multivariate curve resolution of time course microarray data. Bmc Bioinformatics. 7: 343. PMID 16839419 DOI: 10.1186/1471-2105-7-343 |
0.561 |
|
| 2006 |
Allen C, Büttner S, Aragon AD, Thomas JA, Meirelles O, Jaetao JE, Benn D, Ruby SW, Veenhuis M, Madeo F, Werner-Washburne M. Isolation of quiescent and nonquiescent cells from yeast stationary-phase cultures. The Journal of Cell Biology. 174: 89-100. PMID 16818721 DOI: 10.1083/Jcb.200604072 |
0.685 |
|
| 2006 |
Aragon AD, Quiñones GA, Thomas EV, Roy S, Werner-Washburne M. Release of extraction-resistant mRNA in stationary phase Saccharomyces cerevisiae produces a massive increase in transcript abundance in response to stress. Genome Biology. 7: R9. PMID 16507144 DOI: 10.1186/Gb-2006-7-2-R9 |
0.621 |
|
| 2006 |
Aragon AD, Quiñones GA, Allen C, Thomas J, Roy S, Davidson GS, Wentzell PD, Millier B, Jaetao JE, Rodriguez AL, Werner-Washburne M. An automated, pressure-driven sampling device for harvesting from liquid cultures for genomic and biochemical analyses. Journal of Microbiological Methods. 65: 357-60. PMID 16198434 DOI: 10.1016/J.Mimet.2005.08.015 |
0.547 |
|
| 2006 |
Flemming JH, Baca HK, Werner-Washburne M, Brozik SM, López GP. A packed microcolumn approach to a cell-based biosensor Sensors and Actuators, B: Chemical. 113: 376-381. DOI: 10.1016/J.Snb.2005.03.098 |
0.37 |
|
| 2004 |
Martinez MJ, Roy S, Archuletta AB, Wentzell PD, Anna-Arriola SS, Rodriguez AL, Aragon AD, Quiñones GA, Allen C, Werner-Washburne M. Genomic analysis of stationary-phase and exit in Saccharomyces cerevisiae: gene expression and identification of novel essential genes. Molecular Biology of the Cell. 15: 5295-305. PMID 15456898 DOI: 10.1091/Mbc.E03-11-0856 |
0.649 |
|
| 2004 |
Gray JV, Petsko GA, Johnston GC, Ringe D, Singer RA, Werner-Washburne M. "Sleeping beauty": quiescence in Saccharomyces cerevisiae. Microbiology and Molecular Biology Reviews : Mmbr. 68: 187-206. PMID 15187181 DOI: 10.1128/Mmbr.68.2.187-206.2004 |
0.393 |
|
| 2004 |
Braun EL, Natvig DO, Werner-Washburne M, Anne Nelson M. Genomics in Neurospora crassa: From One-Gene-One-Enzyme to 10,000 Genes Applied Mycology and Biotechnology. 4: 295-313. DOI: 10.1016/S1874-5334(04)80015-7 |
0.574 |
|
| 2003 |
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, ... ... Werner-Washburne M, et al. The genome sequence of the filamentous fungus Neurospora crassa. Nature. 422: 859-68. PMID 12712197 DOI: 10.1038/Nature01554 |
0.569 |
|
| 2002 |
Werner-Washburne M, Wylie B, Boyack K, Fuge E, Galbraith J, Weber J, Davidson G. Comparative analysis of multiple genome-scale data sets. Genome Research. 12: 1564-73. PMID 12368249 DOI: 10.1101/Gr.225402 |
0.369 |
|
| 2002 |
Gasch AP, Werner-Washburne M. The genomics of yeast responses to environmental stress and starvation. Functional & Integrative Genomics. 2: 181-92. PMID 12192591 DOI: 10.1007/S10142-002-0058-2 |
0.336 |
|
| 1998 |
Padilla PA, Fuge EK, Crawford ME, Errett A, Werner-Washburne M. The highly conserved, coregulated SNO and SNZ gene families in Saccharomyces cerevisiae respond to nutrient limitation. Journal of Bacteriology. 180: 5718-26. PMID 9791124 DOI: 10.1128/Jb.180.24.6794-6794.1998 |
0.386 |
|
| 1997 |
Peck VM, Fuge EK, Padilla PA, Gomez MA, Werner-Washburne M. Yeast bcy1 mutants with stationary phase-specific defects. Current Genetics. 32: 83-92. PMID 9294255 DOI: 10.1007/S002940050251 |
0.352 |
|
| 1997 |
Nelson MA, Kang S, Braun EL, Crawford ME, Dolan PL, Leonard PM, Mitchell J, Armijo AM, Bean L, Blueyes E, Cushing T, Errett A, Fleharty M, Gorman M, Judson K, ... ... Werner-Washburne M, et al. Expressed sequences from conidial, mycelial, and sexual stages of Neurospora crassa. Fungal Genetics and Biology : Fg & B. 21: 348-63. PMID 9290248 DOI: 10.1006/Fgbi.1997.0986 |
0.59 |
|
| 1996 |
Braun EL, Fuge EK, Padilla PA, Werner-Washburne M. A stationary-phase gene in Saccharomyces cerevisiae is a member of a novel, highly conserved gene family. Journal of Bacteriology. 178: 6865-72. PMID 8955308 DOI: 10.1128/Jb.178.23.6865-6872.1996 |
0.626 |
|
| 1996 |
Werner-Washburne M, Braun EL, Crawford ME, Peck VM. Stationary phase in Saccharomyces cerevisiae. Molecular Microbiology. 19: 1159-66. PMID 8730858 DOI: 10.1111/J.1365-2958.1996.Tb02461.X |
0.619 |
|
| 1994 |
Fuge EK, Braun EL, Werner-Washburne M. Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae. Journal of Bacteriology. 176: 5802-13. PMID 8083172 DOI: 10.1128/Jb.176.18.5802-5813.1994 |
0.609 |
|
| 1993 |
Werner-Washburne M, Braun E, Johnston GC, Singer RA. Stationary phase in the yeast Saccharomyces cerevisiae. Microbiological Reviews. 57: 383-401. DOI: 10.1128/Mmbr.57.2.383-401.1993 |
0.634 |
|
| 1992 |
Nelson RJ, Ziegelhoffer T, Nicolet C, Werner-Washburne M, Craig EA. The translation machinery and 70 kd heat shock protein cooperate in protein synthesis Cell. 71: 97-105. PMID 1394434 DOI: 10.1016/0092-8674(92)90269-I |
0.563 |
|
| 1989 |
Werner-Washburne M, Craig EA. Expression of members of the Saccharomyces cerevisiae hsp70 multigene family Genome. 31: 684-689. PMID 2698838 DOI: 10.1139/G89-125 |
0.543 |
|
| 1989 |
Craig EA, Kramer J, Shilling J, Werner-Washburne M, Holmes S, Kosic-Smithers J, Nicolet CM. SSC1, an essential member of the yeast HSP70 multigene family, encodes a mitochondrial protein. Molecular and Cellular Biology. 9: 3000-8. PMID 2674677 DOI: 10.1128/Mcb.9.7.3000 |
0.553 |
|
| 1989 |
Werner-Washburne M, Becker J, Kosic-Smithers J, Craig EA. Yeast Hsp70 RNA levels vary in response to the physiological status of the cell. Journal of Bacteriology. 171: 2680-8. PMID 2651414 DOI: 10.1128/Jb.171.5.2680-2688.1989 |
0.541 |
|
| 1988 |
Deshaies RJ, Koch BD, Werner-Washburne M, Craig EA, Schekman R. A subfamily of stress proteins facilitates translocation of secretory and mitochondrial precursor polypeptides. Nature. 332: 800-5. PMID 3282178 DOI: 10.1038/332800A0 |
0.556 |
|
| 1987 |
Werner-Washburne M, Stone DE, Craig EA. Complex interactions among members of an essential subfamily of hsp70 genes in Saccharomyces cerevisiae. Molecular and Cellular Biology. 7: 2568-77. PMID 3302682 DOI: 10.1128/Mcb.7.7.2568 |
0.538 |
|
| 1985 |
Woldegiorgis G, Voss S, Shrago E, Werner-Washburne M, Keegstra K. Adenine nucleotide translocase-dependent anion transport in pea chloroplasts Bba - Bioenergetics. 810: 340-345. PMID 2998460 DOI: 10.1016/0005-2728(85)90219-1 |
0.546 |
|
| 1984 |
Keegstra K, Werner-Washburne M, Cline K, Andrews J. The chloroplast envelope: is it homologous with the double membranes of mitochondria and gram-negative bacteria? Journal of Cellular Biochemistry. 24: 55-68. PMID 6725421 DOI: 10.1002/Jcb.240240105 |
0.534 |
|
| 1983 |
Woldegiorgis G, Voss S, Shrago E, Werner-Washburne M, Keegstra K. An adenine nucleotide-phosphoenolpyruvate counter-transport system in C3 and C4 plant chloroplasts Biochemical and Biophysical Research Communications. 116: 945-951. PMID 6316974 DOI: 10.1016/S0006-291X(83)80233-2 |
0.537 |
|
| Show low-probability matches. |