| Year |
Citation |
Score |
| 2024 |
Pick K, Stothard P, Raivio TL. Complete genome sequence of MP1. Microbiology Resource Announcements. e0121623. PMID 38483452 DOI: 10.1128/mra.01216-23 |
0.311 |
|
| 2023 |
Wishart DS, Han S, Saha S, Oler E, Peters H, Grant JR, Stothard P, Gautam V. PHASTEST: faster than PHASTER, better than PHAST. Nucleic Acids Research. PMID 37194694 DOI: 10.1093/nar/gkad382 |
0.334 |
|
| 2022 |
Heidaritabar M, Huisman A, Krivushin K, Stothard P, Dervishi E, Charagu P, Bink MCAM, Plastow GS. Imputation to whole-genome sequence and its use in genome-wide association studies for pork colour traits in crossbred and purebred pigs. Frontiers in Genetics. 13: 1022681. PMID 36303553 DOI: 10.3389/fgene.2022.1022681 |
0.316 |
|
| 2022 |
Bolormaa S, MacLeod IM, Khansefid M, Marett LC, Wales WJ, Miglior F, Baes CF, Schenkel FS, Connor EE, Manzanilla-Pech CIV, Stothard P, Herman E, Nieuwhof GJ, Goddard ME, Pryce JE. Sharing of either phenotypes or genetic variants can increase the accuracy of genomic prediction of feed efficiency. Genetics, Selection, Evolution : Gse. 54: 60. PMID 36068488 DOI: 10.1186/s12711-022-00749-z |
0.326 |
|
| 2021 |
Bolormaa S, Swan AA, Stothard P, Khansefid M, Moghaddar N, Duijvesteijn N, van der Werf JHJ, Daetwyler HD, MacLeod IM. A conditional multi-trait sequence GWAS discovers pleiotropic candidate genes and variants for sheep wool, skin wrinkle and breech cover traits. Genetics, Selection, Evolution : Gse. 53: 58. PMID 34238208 DOI: 10.1186/s12711-021-00651-0 |
0.338 |
|
| 2021 |
Butty AM, Chud TCS, Cardoso DF, Lopes LSF, Miglior F, Schenkel FS, Cánovas A, Häfliger IM, Drögemüller C, Stothard P, Malchiodi F, Baes CF. Genome-wide association study between copy number variants and hoof health traits in Holstein dairy cattle. Journal of Dairy Science. PMID 33896633 DOI: 10.3168/jds.2020-19879 |
0.337 |
|
| 2020 |
Zhi S, Stothard P, Banting G, Scott C, Huntley K, Ryu K, Otto S, Ashbolt N, Checkley S, Dong T, Ruecker NJ, Neumann NF. Characterization of water treatment-resistant and multidrug-resistant urinary pathogenic Escherichia coli in treated wastewater. Water Research. 182: 115827. PMID 32580076 DOI: 10.1016/J.Watres.2020.115827 |
0.432 |
|
| 2020 |
Butty AM, Chud TCS, Miglior F, Schenkel FS, Kommadath A, Krivushin K, Grant JR, Häfliger IM, Drögemüller C, Cánovas A, Stothard P, Baes CF. High confidence copy number variants identified in Holstein dairy cattle from whole genome sequence and genotype array data. Scientific Reports. 10: 8044. PMID 32415111 DOI: 10.1038/S41598-020-64680-3 |
0.407 |
|
| 2020 |
Zhang F, Wang Y, Mukiibi R, Chen L, Vinsky M, Plastow G, Basarab J, Stothard P, Li C. Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency and component traits. Bmc Genomics. 21: 36. PMID 31931702 DOI: 10.1186/S12864-019-6362-1 |
0.452 |
|
| 2020 |
Wang Y, Zhang F, Mukiibi R, Chen L, Vinsky M, Plastow G, Basarab J, Stothard P, Li C. Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: II: carcass merit traits. Bmc Genomics. 21: 38. PMID 31931697 DOI: 10.1186/S12864-019-6273-1 |
0.451 |
|
| 2019 |
Russell T, Cullingham C, Kommadath A, Stothard P, Herbst A, Coltman D. Development of a Novel Mule Deer Genomic Assembly and Species-Diagnostic SNP Panel for Assessing Introgression in Mule Deer, White-Tailed Deer, and Their Interspecific Hybrids. G3 (Bethesda, Md.). 9: 911-919. PMID 33575759 DOI: 10.1534/g3.118.200838 |
0.348 |
|
| 2019 |
Hameed A, Shahina M, Lai WA, Stothard P, Young LS, Lin SY, Young CC. Draft genome sequence reveals co-occurrence of multiple antimicrobial resistance and plant probiotic traits in rice root endophytic strain Burkholderia sp. LS-044 affiliated to Bcc. Journal of Global Antimicrobial Resistance. PMID 31809939 DOI: 10.1016/J.Jgar.2019.11.017 |
0.371 |
|
| 2019 |
Mukiibi R, Vinsky M, Keogh K, Fitzsimmons C, Stothard P, Waters SM, Li C. Liver transcriptome profiling of beef steers with divergent growth rate, feed intake or metabolic body weight phenotypes. Journal of Animal Science. PMID 31583405 DOI: 10.1093/Jas/Skz315 |
0.361 |
|
| 2019 |
Kommadath A, Grant JR, Krivushin K, Butty AM, Baes CF, Carthy TR, Berry DP, Stothard P. A large interactive visual database of copy number variants discovered in taurine cattle. Gigascience. 8. PMID 31241156 DOI: 10.1093/Gigascience/Giz073 |
0.427 |
|
| 2019 |
Butty AM, Sargolzaei M, Miglior F, Stothard P, Schenkel FS, Gredler-Grandl B, Baes CF. Optimizing Selection of the Reference Population for Genotype Imputation From Array to Sequence Variants. Frontiers in Genetics. 10: 510. PMID 31214246 DOI: 10.3389/Fgene.2019.00510 |
0.382 |
|
| 2019 |
Jaswal R, Pathak A, Iii BE, Iii RL, Seaman JC, Stothard P, Krivushin K, Blom J, Rupp O, Chauhan A. Metagenomics-Guided Survey, Isolation, and Characterization of Uranium Resistant Microbiota from the Savannah River Site, USA. Genes. 10. PMID 31035394 DOI: 10.3390/Genes10050325 |
0.32 |
|
| 2019 |
Peters DL, McCutcheon JG, Stothard P, Dennis JJ. Novel Stenotrophomonas maltophilia temperate phage DLP4 is capable of lysogenic conversion. Bmc Genomics. 20: 300. PMID 30991961 DOI: 10.1186/S12864-019-5674-5 |
0.336 |
|
| 2019 |
Zhi S, Banting G, Stothard P, Ashbolt NJ, Checkley S, Meyer K, Otto S, Neumann NF. Evidence for the evolution, clonal expansion and global dissemination of water treatment-resistant naturalized strains of Escherichia coli in wastewater. Water Research. 156: 208-222. PMID 30921537 DOI: 10.1016/J.Watres.2019.03.024 |
0.339 |
|
| 2019 |
Russell T, Cullingham C, Kommadath A, Stothard P, Herbst A, Coltman D. Development of a Novel Mule Deer Genomic Assembly and Species-Diagnostic SNP Panel for Assessing Introgression in Mule Deer, White-Tailed Deer, and Their Interspecific Hybrids. G3 (Bethesda, Md.). PMID 30670611 DOI: 10.1534/G3.118.200838 |
0.45 |
|
| 2019 |
Bolormaa S, Chamberlain AJ, Khansefid M, Stothard P, Swan AA, Mason B, Prowse-Wilkins CP, Duijvesteijn N, Moghaddar N, van der Werf JH, Daetwyler HD, MacLeod IM. Accuracy of imputation to whole-genome sequence in sheep. Genetics, Selection, Evolution : Gse. 51: 1. PMID 30654735 DOI: 10.1186/S12711-018-0443-5 |
0.445 |
|
| 2018 |
Hameed A, Shahina M, Huang HC, Lai WA, Lin SY, Stothard P, Young CC. Complete genome sequence of Siansivirga zeaxanthinifaciens CC-SAMT-1, a flavobacterium isolated from coastal surface seawater. Marine Genomics. 37: 21-25. PMID 33250121 DOI: 10.1016/j.margen.2017.09.003 |
0.314 |
|
| 2018 |
Koufariotis L, Hayes BJ, Kelly M, Burns BM, Lyons R, Stothard P, Chamberlain AJ, Moore S. Sequencing the mosaic genome of Brahman cattle identifies historic and recent introgression including polled. Scientific Reports. 8: 17761. PMID 30531891 DOI: 10.1038/S41598-018-35698-5 |
0.477 |
|
| 2018 |
Pathak A, Jaswal R, Stothard P, Brooks S, Chauhan A. Draft Genome Sequence of Pseudomonas sp. Strain B1, Isolated from a Contaminated Sediment. Genome Announcements. 6. PMID 29930041 DOI: 10.1128/Genomea.00518-18 |
0.405 |
|
| 2018 |
Mukiibi R, Vinsky M, Keogh KA, Fitzsimmons C, Stothard P, Waters SM, Li C. Transcriptome analyses reveal reduced hepatic lipid synthesis and accumulation in more feed efficient beef cattle. Scientific Reports. 8: 7303. PMID 29740082 DOI: 10.1038/S41598-018-25605-3 |
0.403 |
|
| 2018 |
Zhang C, Kemp RA, Stothard P, Wang Z, Boddicker N, Krivushin K, Dekkers J, Plastow G. Genomic evaluation of feed efficiency component traits in Duroc pigs using 80K, 650K and whole-genome sequence variants. Genetics, Selection, Evolution : Gse. 50: 14. PMID 29625549 DOI: 10.1186/S12711-018-0387-9 |
0.437 |
|
| 2018 |
Koufariotis LT, Chen YP, Stothard P, Hayes BJ. Variance explained by whole genome sequence variants in coding and regulatory genome annotations for six dairy traits. Bmc Genomics. 19: 237. PMID 29618315 DOI: 10.1186/S12864-018-4617-X |
0.428 |
|
| 2018 |
Bouwman AC, Daetwyler HD, Chamberlain AJ, Ponce CH, Sargolzaei M, Schenkel FS, Sahana G, Govignon-Gion A, Boitard S, Dolezal M, Pausch H, Brøndum RF, Bowman PJ, Thomsen B, Guldbrandtsen B, ... ... Stothard P, et al. Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals. Nature Genetics. PMID 29459679 DOI: 10.1038/S41588-018-0056-5 |
0.456 |
|
| 2018 |
Abo-Ismail MK, Lansink N, Akanno E, Karisa B, Crowley JJ, Moore S, Bork E, Stothard P, Basarab JA, Plastow G. Development and validation of a small SNP panel for feed efficiency in beef cattle. Journal of Animal Science. PMID 29390120 DOI: 10.1093/Jas/Sky020 |
0.4 |
|
| 2018 |
Chauhan A, Pathak A, Jaswal R, Edwards Iii B, Chappell D, Ball C, Garcia-Sillas R, Stothard P, Seaman J. Physiological and Comparative Genomic Analysis of Arthrobacter sp. SRS-W-1-2016 Provides Insights on Niche Adaptation for Survival in Uraniferous Soils. Genes. 9. PMID 29324691 DOI: 10.3390/Genes9010031 |
0.371 |
|
| 2018 |
Miglior F, Baes C, Cánovas A, Coffey M, Connor E, De Pauw M, Goddard E, Hailu G, Lassen J, Malchiodi F, Osborne V, Pryce J, Sargolzaei M, Schenkel F, Wall E, ... ... Stothard P, et al. 324 A progress report for the Efficient Dairy Genome Project. Journal of Animal Science. 96: 123-123. DOI: 10.1093/Jas/Sky404.271 |
0.348 |
|
| 2018 |
Wang Y, Zhang F, Chen L, Vinsky M, Crowley J, Plastow G, Basarab J, Stothard P, Li C. 287 Genomic prediction for residual feed intake and its component traits based on 50K and imputed 7.8 Journal of Animal Science. 96: 107-107. DOI: 10.1093/Jas/Sky404.236 |
0.35 |
|
| 2018 |
Abo-Ismail M, Crowley J, Akanno E, Li C, Stothard P, Aalhus J, Plastow G, Basarab J. 250 Genome wide Association analyses for meat quality traits in multibreed and crossbred beef cattle. Journal of Animal Science. 96: 84-84. DOI: 10.1093/Jas/Sky404.185 |
0.401 |
|
| 2018 |
Hameed A, Shahina M, Huang H, Lai W, Lin S, Stothard P, Young C. Complete genome sequence of Siansivirga zeaxanthinifaciens CC-SAMT-1T, a flavobacterium isolated from coastal surface seawater Marine Genomics. 37: 21-25. DOI: 10.1016/J.Margen.2017.09.003 |
0.401 |
|
| 2017 |
Abo-Ismail MK, Brito LF, Miller SP, Sargolzaei M, Grossi DA, Moore SS, Plastow G, Stothard P, Nayeri S, Schenkel FS. Genome-wide association studies and genomic prediction of breeding values for calving performance and body conformation traits in Holstein cattle. Genetics, Selection, Evolution : Gse. 49: 82. PMID 29115939 DOI: 10.1186/S12711-017-0356-8 |
0.437 |
|
| 2017 |
Stothard P, Grant JR, Van Domselaar G. Visualizing and comparing circular genomes using the CGView family of tools. Briefings in Bioinformatics. PMID 28968859 DOI: 10.1093/Bib/Bbx081 |
0.431 |
|
| 2017 |
Ye MH, Bao H, Meng Y, Guan LL, Stothard P, Plastow G. Comparative Transcriptomic Analysis of Porcine Peripheral Blood Reveals Differentially Expressed Genes from the Cytokine-cytokine Receptor Interaction Pathway Related to Health Status. Genome. PMID 28763624 DOI: 10.1139/Gen-2017-0074 |
0.351 |
|
| 2017 |
Kommadath A, Bao H, Choi I, Reecy JM, Koltes JE, Fritz-Waters E, Eisley CJ, Grant JR, Rowland RR, Tuggle CK, Dekkers JC, Lunney JK, Guan LL, Stothard P, Plastow GS. Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection. Scientific Reports. 7: 46203. PMID 28393889 DOI: 10.1038/Srep46203 |
0.362 |
|
| 2017 |
Pathak A, Chauhan A, Stothard P, Green S, Maienschein-Cline M, Jaswal R, Seaman J. Genome-centric evaluation of Burkholderia sp. strain SRS-W-2-2016 resistant to high concentrations of uranium and nickel isolated from the Savannah River Site (SRS), USA. Genomics Data. 12: 62-68. PMID 28373958 DOI: 10.1016/J.Gdata.2017.02.011 |
0.363 |
|
| 2017 |
Peters DL, Stothard P, Dennis JJ. The isolation and characterization of Stenotrophomonas maltophilia T4-like bacteriophage DLP6. Plos One. 12: e0173341. PMID 28291834 DOI: 10.1371/Journal.Pone.0173341 |
0.319 |
|
| 2016 |
Nayeri S, Sargolzaei M, Abo-Ismail MK, Miller S, Schenkel F, Moore SS, Stothard P. Genome-wide association study for lactation persistency, female fertility, longevity, and lifetime profit index traits in Holstein dairy cattle. Journal of Dairy Science. PMID 27889128 DOI: 10.3168/Jds.2016-11770 |
0.431 |
|
| 2016 |
Pathak A, Chauhan A, Blom J, Indest KJ, Jung CM, Stothard P, Bera G, Green SJ, Ogram A. Comparative Genomics and Metabolic Analysis Reveals Peculiar Characteristics of Rhodococcus opacus Strain M213 Particularly for Naphthalene Degradation. Plos One. 11: e0161032. PMID 27532207 DOI: 10.1371/Journal.Pone.0161032 |
0.412 |
|
| 2016 |
Kong RS, Liang G, Chen Y, Stothard P, Guan le L. Transcriptome profiling of the rumen epithelium of beef cattle differing in residual feed intake. Bmc Genomics. 17: 592. PMID 27506548 DOI: 10.1186/S12864-016-2935-4 |
0.302 |
|
| 2016 |
Chauhan A, Pathak A, Ewida AY, Griffiths Z, Stothard P. Whole genome sequence analysis of an Alachlor and Endosulfan degrading Pseudomonas strain W15Feb9B isolated from Ochlockonee River, Florida. Genomics Data. 8: 134-8. PMID 27330991 DOI: 10.1016/J.Gdata.2016.05.008 |
0.405 |
|
| 2016 |
Nayeri S, Sargolzaei M, Abo-Ismail MK, May N, Miller SP, Schenkel F, Moore SS, Stothard P. Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle. Bmc Genetics. 17: 75. PMID 27287773 DOI: 10.1186/S12863-016-0386-1 |
0.444 |
|
| 2016 |
Wilkinson JM, Bao H, Ladinig A, Hong L, Stothard P, Lunney JK, Plastow GS, Harding JC. Genome-wide analysis of the transcriptional response to porcine reproductive and respiratory syndrome virus infection at the maternal/fetal interface and in the fetus. Bmc Genomics. 17: 383. PMID 27207143 DOI: 10.1186/S12864-016-2720-4 |
0.331 |
|
| 2016 |
Lu D, Akanno EC, Crowley JJ, Schenkel F, Li H, De Pauw M, Moore SS, Wang Z, Li C, Stothard P, Plastow G, Miller SP, Basarab JA. Accuracy of genomic predictions for feed efficiency traits of beef cattle using 50K and imputed HD genotypes. Journal of Animal Science. 94: 1342-1353. PMID 27135994 DOI: 10.2527/Jas.2015-0126 |
0.405 |
|
| 2016 |
Wilkinson JM, Ladinig A, Bao H, Kommadath A, Stothard P, Lunney JK, Harding JC, Plastow GS. Differences in Whole Blood Gene Expression Associated with Infection Time-Course and Extent of Fetal Mortality in a Reproductive Model of Type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Infection. Plos One. 11: e0153615. PMID 27093427 DOI: 10.1371/Journal.Pone.0153615 |
0.311 |
|
| 2016 |
Schroyen M, Eisley C, Koltes JE, Fritz-Waters E, Choi I, Plastow GS, Guan L, Stothard P, Bao H, Kommadath A, Reecy JM, Lunney JK, Rowland RR, Dekkers JC, Tuggle CK. Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL. Bmc Genomics. 17: 196. PMID 26951612 DOI: 10.1186/S12864-016-2547-Z |
0.339 |
|
| 2016 |
Hong L, Lunney JK, Wilkinson JW, Bao H, Ladinig A, Stothard P, Plastow G, Harding JCS. P6031 Confirmation of genome wide analysis of transcriptional responses to Porcine reproductive and respiratory syndrome virus infection in a pregnant gilt model Journal of Animal Science. 94: 164-164. DOI: 10.2527/Jas2016.94Supplement4164X |
0.322 |
|
| 2016 |
Li C, Chen L, Vinsky M, Crowley J, Miller SP, Plastow G, Basarab J, Stothard P. 0322 Genomic prediction for feed efficiency traits based on 50K and imputed high density SNP genotypes in multiple breed populations of Canadian beef cattle Journal of Animal Science. 94: 154-155. DOI: 10.2527/Jam2016-0322 |
0.38 |
|
| 2016 |
Wilson AM, Butty AM, Baes C, Cánovas A, Coffey MP, Connor EE, De Pauw M, Gredler B, Goddard E, Hailu G, Osborne VR, Pryce JE, Sargolzaei M, Schenkel FS, Stothard P, et al. 0320 An international effort to improve feed efficiency and reduce methane emissions in dairy cows through genomics Journal of Animal Science. 94: 153-154. DOI: 10.2527/Jam2016-0320 |
0.336 |
|
| 2015 |
Chen L, Ekine-Dzivenu C, Vinsky M, Basarab J, Aalhus J, Dugan ME, Fitzsimmons C, Stothard P, Li C. Genome-wide association and genomic prediction of breeding values for fatty acid composition in subcutaneous adipose and longissimus lumborum muscle of beef cattle. Bmc Genetics. 16: 135. PMID 26589139 DOI: 10.1186/S12863-015-0290-0 |
0.394 |
|
| 2015 |
Stothard P, Liao X, Arantes AS, De Pauw M, Coros C, Plastow GS, Sargolzaei M, Crowley JJ, Basarab JA, Schenkel F, Moore S, Miller SP. A large and diverse collection of bovine genome sequences from the Canadian Cattle Genome Project. Gigascience. 4: 49. PMID 26504517 DOI: 10.1186/S13742-015-0090-5 |
0.454 |
|
| 2015 |
Wang Y, Wylie T, Stothard P, Lin G. Whole genome SNP genotype piecemeal imputation. Bmc Bioinformatics. 16: 340. PMID 26498158 DOI: 10.1186/S12859-015-0770-2 |
0.379 |
|
| 2015 |
Paradis F, Yue S, Grant JR, Stothard P, Basarab JA, Fitzsimmons C. Transcriptomic analysis by RNA sequencing reveals that hepatic interferon-induced genes may be associated with feed efficiency in beef heifers. Journal of Animal Science. 93: 3331-41. PMID 26440002 DOI: 10.2527/Jas.2015-8975 |
0.355 |
|
| 2015 |
Peters DL, Lynch KH, Stothard P, Dennis JJ. The isolation and characterization of two Stenotrophomonas maltophilia bacteriophages capable of cross-taxonomic order infectivity. Bmc Genomics. 16: 664. PMID 26335566 DOI: 10.1186/S12864-015-1848-Y |
0.349 |
|
| 2015 |
Koltes JE, Fritz-Waters E, Eisley CJ, Choi I, Bao H, Kommadath A, Serão NV, Boddicker NJ, Abrams SM, Schroyen M, Loyd H, Tuggle CK, Plastow GS, Guan L, Stothard P, et al. Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection. Bmc Genomics. 16: 412. PMID 26016888 DOI: 10.1186/S12864-015-1635-9 |
0.347 |
|
| 2015 |
Miller JM, Moore SS, Stothard P, Liao X, Coltman DW. Harnessing cross-species alignment to discover SNPs and generate a draft genome sequence of a bighorn sheep (Ovis canadensis). Bmc Genomics. 16: 397. PMID 25990117 DOI: 10.1186/S12864-015-1618-X |
0.432 |
|
| 2014 |
Choi I, Bao H, Kommadath A, Hosseini A, Sun X, Meng Y, Stothard P, Plastow GS, Tuggle CK, Reecy JM, Fritz-Waters E, Abrams SM, Lunney JK, Guan le L. Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples. Bmc Genomics. 15: 954. PMID 25374277 DOI: 10.1186/1471-2164-15-954 |
0.309 |
|
| 2014 |
Liao X, Bao H, Meng Y, Plastow G, Moore S, Stothard P. Sequence, structural and expression divergence of duplicate genes in the bovine genome. Plos One. 9: e102868. PMID 25054921 DOI: 10.1371/Journal.Pone.0102868 |
0.452 |
|
| 2014 |
Daetwyler HD, Capitan A, Pausch H, Stothard P, van Binsbergen R, Brøndum RF, Liao X, Djari A, Rodriguez SC, Grohs C, Esquerré D, Bouchez O, Rossignol MN, Klopp C, Rocha D, et al. Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle. Nature Genetics. 46: 858-65. PMID 25017103 DOI: 10.1038/Ng.3034 |
0.461 |
|
| 2014 |
Choi JW, Liao X, Stothard P, Chung WH, Jeon HJ, Miller SP, Choi SY, Lee JK, Yang B, Lee KT, Han KJ, Kim HC, Jeong D, Oh JD, Kim N, et al. Whole-genome analyses of Korean native and Holstein cattle breeds by massively parallel sequencing. Plos One. 9: e101127. PMID 24992012 DOI: 10.1371/Journal.Pone.0101127 |
0.481 |
|
| 2014 |
Kommadath A, Bao H, Arantes AS, Plastow GS, Tuggle CK, Bearson SM, Guan le L, Stothard P. Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding. Bmc Genomics. 15: 452. PMID 24912583 DOI: 10.1186/1471-2164-15-452 |
0.356 |
|
| 2014 |
Abo-Ismail MK, Vander Voort G, Squires JJ, Swanson KC, Mandell IB, Liao X, Stothard P, Moore S, Plastow G, Miller SP. Single nucleotide polymorphisms for feed efficiency and performance in crossbred beef cattle. Bmc Genetics. 15: 14. PMID 24476087 DOI: 10.1186/1471-2156-15-14 |
0.411 |
|
| 2013 |
Liao X, Peng F, Forni S, McLaren D, Plastow G, Stothard P. Whole genome sequencing of Gir cattle for identifying polymorphisms and loci under selection. Genome / National Research Council Canada = Gã©Nome / Conseil National De Recherches Canada. 56: 592-8. PMID 24237340 DOI: 10.1139/Gen-2013-0082 |
0.453 |
|
| 2013 |
Li M, Tian S, Jin L, Zhou G, Li Y, Zhang Y, Wang T, Yeung CK, Chen L, Ma J, Zhang J, Jiang A, Li J, Zhou C, Zhang J, ... ... Stothard P, et al. Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars. Nature Genetics. 45: 1431-8. PMID 24162736 DOI: 10.1038/Ng.2811 |
0.453 |
|
| 2013 |
Choi JW, Liao X, Park S, Jeon HJ, Chung WH, Stothard P, Park YS, Lee JK, Lee KT, Kim SH, Oh JD, Kim N, Kim TH, Lee HK, Lee SJ. Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels. Molecules and Cells. 36: 203-11. PMID 23912596 DOI: 10.1007/S10059-013-2347-0 |
0.485 |
|
| 2013 |
Lee KT, Chung WH, Lee SY, Choi JW, Kim J, Lim D, Lee S, Jang GW, Kim B, Choy YH, Liao X, Stothard P, Moore SS, Lee SH, Ahn S, et al. Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity. Bmc Genomics. 14: 519. PMID 23899338 DOI: 10.1186/1471-2164-14-519 |
0.479 |
|
| 2013 |
Karisa BK, Thomson J, Wang Z, Stothard P, Moore SS, Plastow GS. Candidate genes and single nucleotide polymorphisms associated with variation in residual feed intake in beef cattle. Journal of Animal Science. 91: 3502-13. PMID 23736061 DOI: 10.2527/Jas.2012-6170 |
0.413 |
|
| 2013 |
Choi JW, Lee KT, Liao X, Stothard P, An HS, Ahn S, Lee S, Lee SY, Moore SS, Kim TH. Genome-wide copy number variation in Hanwoo, Black Angus, and Holstein cattle. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 24: 151-63. PMID 23543395 DOI: 10.1007/S00335-013-9449-Z |
0.483 |
|
| 2012 |
Thomson JM, Bowles V, Choi JW, Basu U, Meng Y, Stothard P, Moore S. The identification of candidate genes and SNP markers for classical bovine spongiform encephalopathy susceptibility. Prion. 6: 461-9. PMID 22918267 DOI: 10.4161/Pri.21866 |
0.393 |
|
| 2012 |
Wang Y, Cai Z, Stothard P, Moore S, Goebel R, Wang L, Lin G. Fast accurate missing SNP genotype local imputation. Bmc Research Notes. 5: 404. PMID 22863359 DOI: 10.1186/1756-0500-5-404 |
0.349 |
|
| 2012 |
Lynch KH, Stothard P, Dennis JJ. Comparative analysis of two phenotypically-similar but genomically-distinct Burkholderia cenocepacia-specific bacteriophages. Bmc Genomics. 13: 223. PMID 22676492 DOI: 10.1186/1471-2164-13-223 |
0.451 |
|
| 2012 |
Grant JR, Arantes AS, Stothard P. Comparing thousands of circular genomes using the CGView Comparison Tool. Bmc Genomics. 13: 202. PMID 22621371 DOI: 10.1186/1471-2164-13-202 |
0.435 |
|
| 2012 |
Nalaila SM, Stothard P, Moore SS, Li C, Wang Z. Whole-genome QTL scan for ultrasound and carcass merit traits in beef cattle using Bayesian shrinkage method. Journal of Animal Breeding and Genetics = Zeitschrift FüR TierzüChtung Und ZüChtungsbiologie. 129: 107-19. PMID 22394233 DOI: 10.1111/J.1439-0388.2011.00954.X |
0.397 |
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| 2012 |
Canavez FC, Luche DD, Stothard P, Leite KR, Sousa-Canavez JM, Plastow G, Meidanis J, Souza MA, Feijao P, Moore SS, Camara-Lopes LH. Genome sequence and assembly of Bos indicus. The Journal of Heredity. 103: 342-8. PMID 22315242 DOI: 10.1093/Jhered/Esr153 |
0.452 |
|
| 2012 |
Lynch KH, Stothard P, Dennis JJ. Characterization of DC1, a broad-host-range Bcep22-like podovirus. Applied and Environmental Microbiology. 78: 889-91. PMID 22139000 DOI: 10.1128/Aem.07097-11 |
0.315 |
|
| 2012 |
Cruz J, Liu Y, Liang Y, Zhou Y, Wilson M, Dennis JJ, Stothard P, Van Domselaar G, Wishart DS. BacMap: an up-to-date electronic atlas of annotated bacterial genomes. Nucleic Acids Research. 40: D599-604. PMID 22135301 DOI: 10.1093/Nar/Gkr1105 |
0.41 |
|
| 2011 |
Stothard P, Choi JW, Basu U, Sumner-Thomson JM, Meng Y, Liao X, Moore SS. Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery. Bmc Genomics. 12: 559. PMID 22085807 DOI: 10.1186/1471-2164-12-559 |
0.48 |
|
| 2011 |
Marques E, Grant JR, Wang Z, Kolbehdari D, Stothard P, Plastow G, Moore SS. Identification of candidate markers on bovine chromosome 14 (BTA14) under milk production trait quantitative trait loci in Holstein. Journal of Animal Breeding and Genetics = Zeitschrift FüR TierzüChtung Und ZüChtungsbiologie. 128: 305-13. PMID 21749477 DOI: 10.1111/J.1439-0388.2010.00910.X |
0.346 |
|
| 2011 |
Grant JR, Arantes AS, Liao X, Stothard P. In-depth annotation of SNPs arising from resequencing projects using NGS-SNP. Bioinformatics (Oxford, England). 27: 2300-1. PMID 21697123 DOI: 10.1093/Bioinformatics/Btr372 |
0.385 |
|
| 2011 |
Mujibi FD, Nkrumah JD, Durunna ON, Stothard P, Mah J, Wang Z, Basarab J, Plastow G, Crews DH, Moore SS. Accuracy of genomic breeding values for residual feed intake in crossbred beef cattle. Journal of Animal Science. 89: 3353-61. PMID 21642493 DOI: 10.2527/Jas.2010-3361 |
0.387 |
|
| 2011 |
Nalaila SM, Stothard P, Moore SS, Wang Z, Li C. Whole genome fine mapping of quantitative trait loci for ultrasound and carcass merit traits in beef cattle Canadian Journal of Animal Science. 91: 61-73. DOI: 10.4141/Cjas10007 |
0.403 |
|
| 2010 |
Lynch KH, Stothard P, Dennis JJ. Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex. Bmc Genomics. 11: 599. PMID 20973964 DOI: 10.1186/1471-2164-11-599 |
0.423 |
|
| 2010 |
Petkau A, Stuart-Edwards M, Stothard P, Van Domselaar G. Interactive microbial genome visualization with GView. Bioinformatics (Oxford, England). 26: 3125-6. PMID 20956244 DOI: 10.1093/Bioinformatics/Btq588 |
0.38 |
|
| 2010 |
Hernandez-Sanabria E, Guan LL, Goonewardene LA, Li M, Mujibi DF, Stothard P, Moore SS, Leon-Quintero MC. Correlation of particular bacterial PCR-denaturing gradient gel electrophoresis patterns with bovine ruminal fermentation parameters and feed efficiency traits. Applied and Environmental Microbiology. 76: 6338-50. PMID 20709849 DOI: 10.1128/Aem.01052-10 |
0.305 |
|
| 2010 |
Lu YK, Marden J, Han M, Swingley WD, Mastrian SD, Chowdhury SR, Hao J, Helmy T, Kim S, Kurdoglu AA, Matthies HJ, Rollo D, Stothard P, Blankenship RE, Bauer CE, et al. Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum. Bmc Genomics. 11: 325. PMID 20500872 DOI: 10.1186/1471-2164-11-325 |
0.383 |
|
| 2010 |
Murdoch BM, Clawson ML, Laegreid WW, Stothard P, Settles M, McKay S, Prasad A, Wang Z, Moore SS, Williams JL. A 2cM genome-wide scan of European Holstein cattle affected by classical BSE. Bmc Genetics. 11: 20. PMID 20350325 DOI: 10.1186/1471-2156-11-20 |
0.402 |
|
| 2010 |
Lynch KH, Seed KD, Stothard P, Dennis JJ. Inactivation of Burkholderia cepacia complex phage KS9 gp41 identifies the phage repressor and generates lytic virions. Journal of Virology. 84: 1276-88. PMID 19939932 DOI: 10.1128/Jvi.01843-09 |
0.382 |
|
| 2009 |
Kolbehdari D, Wang Z, Grant JR, Murdoch B, Prasad A, Xiu Z, Marques E, Stothard P, Moore SS. A whole genome scan to map QTL for milk production traits and somatic cell score in Canadian Holstein bulls. Journal of Animal Breeding and Genetics = Zeitschrift FüR TierzüChtung Und ZüChtungsbiologie. 126: 216-27. PMID 19646150 DOI: 10.1111/J.1439-0388.2008.00793.X |
0.441 |
|
| 2009 |
Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, ... ... Stothard P, et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (New York, N.Y.). 324: 522-8. PMID 19390049 DOI: 10.1126/Science.1169588 |
0.489 |
|
| 2009 |
Cai Z, Sabaa H, Wang Y, Goebel R, Wang Z, Xu J, Stothard P, Lin G. Most parsimonious haplotype allele sharing determination. Bmc Bioinformatics. 10: 115. PMID 19379528 DOI: 10.1186/1471-2105-10-115 |
0.385 |
|
| 2009 |
Kropinski AM, Borodovsky M, Carver TJ, Cerdeño-Tárraga AM, Darling A, Lomsadze A, Mahadevan P, Stothard P, Seto D, Van Domselaar G, Wishart DS. In silico identification of genes in bacteriophage DNA. Methods in Molecular Biology (Clifton, N.J.). 502: 57-89. PMID 19082552 DOI: 10.1007/978-1-60327-565-1_6 |
0.454 |
|
| 2008 |
Amaral ME, Grant JR, Riggs PK, Stafuzza NB, Filho EA, Goldammer T, Weikard R, Brunner RM, Kochan KJ, Greco AJ, Jeong J, Cai Z, Lin G, Prasad A, Kumar S, ... ... Stothard P, et al. A first generation whole genome RH map of the river buffalo with comparison to domestic cattle. Bmc Genomics. 9: 631. PMID 19108729 DOI: 10.1186/1471-2164-9-631 |
0.413 |
|
| 2008 |
Goudie AD, Lynch KH, Seed KD, Stothard P, Shrivastava S, Wishart DS, Dennis JJ. Genomic sequence and activity of KS10, a transposable phage of the Burkholderia cepacia complex. Bmc Genomics. 9: 615. PMID 19094239 DOI: 10.1186/1471-2164-9-615 |
0.408 |
|
| 2008 |
Mattes TE, Alexander AK, Richardson PM, Munk AC, Han CS, Stothard P, Coleman NV. The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology. Applied and Environmental Microbiology. 74: 6405-16. PMID 18723656 DOI: 10.1128/Aem.00197-08 |
0.425 |
|
| 2008 |
Prasad A, Schnabel RD, McKay SD, Murdoch B, Stothard P, Kolbehdari D, Wang Z, Taylor JF, Moore SS. Linkage disequilibrium and signatures of selection on chromosomes 19 and 29 in beef and dairy cattle. Animal Genetics. 39: 597-605. PMID 18717667 DOI: 10.1111/J.1365-2052.2008.01772.X |
0.348 |
|
| 2008 |
Marques E, Schnabel RD, Stothard P, Kolbehdari D, Wang Z, Taylor JF, Moore SS. High density linkage disequilibrium maps of chromosome 14 in Holstein and Angus cattle. Bmc Genetics. 9: 45. PMID 18611270 DOI: 10.1186/1471-2156-9-45 |
0.413 |
|
| 2008 |
Kolbehdari D, Wang Z, Grant JR, Murdoch B, Prasad A, Xiu Z, Marques E, Stothard P, Moore SS. A whole-genome scan to map quantitative trait loci for conformation and functional traits in Canadian Holstein bulls. Journal of Dairy Science. 91: 2844-56. PMID 18565942 DOI: 10.3168/Jds.2007-0585 |
0.446 |
|
| 2008 |
Cheng D, Knox C, Young N, Stothard P, Damaraju S, Wishart DS. PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites. Nucleic Acids Research. 36: W399-405. PMID 18487273 DOI: 10.1093/Nar/Gkn296 |
0.33 |
|
| 2008 |
Grant JR, Stothard P. The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Research. 36: W181-4. PMID 18411202 DOI: 10.1093/Nar/Gkn179 |
0.445 |
|
| 2007 |
McKay SD, Schnabel RD, Murdoch BM, Matukumalli LK, Aerts J, Coppieters W, Crews D, Dias Neto E, Gill CA, Gao C, Mannen H, Stothard P, Wang Z, Van Tassell CP, Williams JL, et al. Whole genome linkage disequilibrium maps in cattle. Bmc Genetics. 8: 74. PMID 17961247 DOI: 10.1186/1471-2156-8-74 |
0.437 |
|
| 2007 |
Prasad A, Schiex T, McKay S, Murdoch B, Wang Z, Womack JE, Stothard P, Moore SS. High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly. Bmc Genomics. 8: 310. PMID 17784962 DOI: 10.1186/1471-2164-8-310 |
0.387 |
|
| 2007 |
Marques E, de Givry S, Stothard P, Murdoch B, Wang Z, Womack J, Moore SS. A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly. Bmc Genomics. 8: 254. PMID 17655763 DOI: 10.1186/1471-2164-8-254 |
0.316 |
|
| 2007 |
McKay SD, Schnabel RD, Murdoch BM, Aerts J, Gill CA, Gao C, Li C, Matukumalli LK, Stothard P, Wang Z, Van Tassell CP, Williams JL, Taylor JF, Moore SS. Construction of bovine whole-genome radiation hybrid and linkage maps using high-throughput genotyping. Animal Genetics. 38: 120-5. PMID 17302794 DOI: 10.1111/J.1365-2052.2006.01564.X |
0.432 |
|
| 2006 |
Stothard P, Wishart DS. Automated bacterial genome analysis and annotation. Current Opinion in Microbiology. 9: 505-10. PMID 16931121 DOI: 10.1016/J.Mib.2006.08.002 |
0.441 |
|
| 2006 |
Stothard P, Pilgrim D. Conspecific and interspecific interactions between the FEM-2 and the FEM-3 sex-determining proteins despite rapid sequence divergence. Journal of Molecular Evolution. 62: 281-91. PMID 16477523 DOI: 10.1007/S00239-005-0084-5 |
0.594 |
|
| 2005 |
Van Domselaar GH, Stothard P, Shrivastava S, Cruz JA, Guo A, Dong X, Lu P, Szafron D, Greiner R, Wishart DS. BASys: a web server for automated bacterial genome annotation. Nucleic Acids Research. 33: W455-9. PMID 15980511 DOI: 10.1093/Nar/Gki593 |
0.421 |
|
| 2005 |
Vallée M, Gravel C, Palin MF, Reghenas H, Stothard P, Wishart DS, Sirard MA. Identification of novel and known oocyte-specific genes using complementary DNA subtraction and microarray analysis in three different species. Biology of Reproduction. 73: 63-71. PMID 15744023 DOI: 10.1095/Biolreprod.104.037069 |
0.365 |
|
| 2005 |
Stothard P, Van Domselaar G, Shrivastava S, Guo A, O'Neill B, Cruz J, Ellison M, Wishart DS. BacMap: an interactive picture atlas of annotated bacterial genomes. Nucleic Acids Research. 33: D317-20. PMID 15608206 DOI: 10.1093/Nar/Gki075 |
0.425 |
|
| 2005 |
Stothard P, Wishart DS. Circular genome visualization and exploration using CGView. Bioinformatics (Oxford, England). 21: 537-9. PMID 15479716 DOI: 10.1093/Bioinformatics/Bti054 |
0.369 |
|
| 2004 |
Dong X, Stothard P, Forsythe IJ, Wishart DS. PlasMapper: a web server for drawing and auto-annotating plasmid maps. Nucleic Acids Research. 32: W660-4. PMID 15215471 DOI: 10.1093/Nar/Gkh410 |
0.339 |
|
| 2004 |
Sundararaj S, Guo A, Habibi-Nazhad B, Rouani M, Stothard P, Ellison M, Wishart DS. The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Research. 32: D293-5. PMID 14681416 DOI: 10.1093/Nar/Gkh108 |
0.31 |
|
| 2003 |
Stothard P, Pilgrim D. Sex-determination gene and pathway evolution in nematodes. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 25: 221-31. PMID 12596226 DOI: 10.1002/Bies.10239 |
0.625 |
|
| 2002 |
Stothard P, Hansen D, Pilgrim D. Evolution of the PP2C family in Caenorhabditis: rapid divergence of the sex-determining protein FEM-2. Journal of Molecular Evolution. 54: 267-82. PMID 11821919 DOI: 10.1007/S0023901-0008-Y |
0.617 |
|
| 2001 |
Kibenge FS, Kibenge MJ, McKenna PK, Stothard P, Marshall R, Cusack RR, McGeachy S. Antigenic variation among isolates of infectious salmon anaemia virus correlates with genetic variation of the viral haemagglutinin gene. The Journal of General Virology. 82: 2869-79. PMID 11714961 DOI: 10.1099/0022-1317-82-12-2869 |
0.36 |
|
| 2000 |
Stothard P. The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques. 28: 1102, 1104. PMID 10868275 DOI: 10.2144/00286Ir01 |
0.318 |
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