| Year |
Citation |
Score |
| 2024 |
Fragkoulis G, Hangas A, Fekete Z, Michell C, Moraes CT, Willcox S, Griffith JD, Goffart S, Pohjoismäki JLO. Linear DNA-driven recombination in mammalian mitochondria. Nucleic Acids Research. PMID 38300793 DOI: 10.1093/nar/gkae040 |
0.336 |
|
| 2023 |
Calhoun JC, Damania B, Griffith JD, Costantini LM. Electron microscopy mapping of the DNA-binding sites of monomeric, dimeric, and multimeric KSHV RTA protein. Journal of Virology. 97: e0063723. PMID 37750723 DOI: 10.1128/jvi.00637-23 |
0.552 |
|
| 2023 |
Calhoun JC, Damania B, Griffith JD, Costantini LM. Electron microscopy mapping of the DNA-binding sites of monomeric, dimeric, and multimeric KSHV RTA protein. Biorxiv : the Preprint Server For Biology. PMID 37205529 DOI: 10.1101/2023.05.01.538939 |
0.548 |
|
| 2023 |
Al-Turki TM, Griffith JD. Mammalian telomeric RNA (TERRA) can be translated to produce valine-arginine and glycine-leucine dipeptide repeat proteins. Proceedings of the National Academy of Sciences of the United States of America. 120: e2221529120. PMID 36812212 DOI: 10.1073/pnas.2221529120 |
0.335 |
|
| 2022 |
Hernandez AJ, Lee SJ, Thompson NJ, Griffith JD, Richardson CC. Residues located in the primase domain of the bacteriophage T7 primase-helicase are essential for loading the hexameric complex onto DNA. The Journal of Biological Chemistry. 101996. PMID 35500649 DOI: 10.1016/j.jbc.2022.101996 |
0.582 |
|
| 2021 |
Kumar C, Batra S, Griffith JD, Remus D. The interplay of RNA:DNA hybrid structure and G-quadruplexes determines the outcome of R-loop-replisome collisions. Elife. 10. PMID 34494544 DOI: 10.7554/eLife.72286 |
0.308 |
|
| 2021 |
Jiang M, Xie X, Zhu X, Jiang S, Milenkovic D, Misic J, Shi Y, Tandukar N, Li X, Atanassov I, Jenninger L, Hoberg E, Albarran-Gutierrez S, Szilagyi Z, Macao B, ... ... Griffith JD, et al. The mitochondrial single-stranded DNA binding protein is essential for initiation of mtDNA replication. Science Advances. 7. PMID 34215584 DOI: 10.1126/sciadv.abf8631 |
0.42 |
|
| 2020 |
Tomáška Ľ, Cesare AJ, AlTurki TM, Griffith JD. Twenty years of t-loops: A case study for the importance of collaboration in molecular biology. Dna Repair. 102901. PMID 32620538 DOI: 10.1016/J.Dnarep.2020.102901 |
0.726 |
|
| 2020 |
Tsutakawa SE, Sarker AH, Ng C, Arvai AS, Shin DS, Shih B, Jiang S, Thwin AC, Tsai MS, Willcox A, Her MZ, Trego KS, Raetz AG, Rosenberg D, Bacolla A, ... ... Griffith JD, et al. Human XPG nuclease structure, assembly, and activities with insights for neurodegeneration and cancer from pathogenic mutations. Proceedings of the National Academy of Sciences of the United States of America. PMID 32522879 DOI: 10.1073/Pnas.1921311117 |
0.461 |
|
| 2020 |
Nadalutti CA, Stefanick DF, Zhao ML, Horton JK, Prasad R, Brooks AM, Griffith JD, Wilson SH. Mitochondrial dysfunction and DNA damage accompany enhanced levels of formaldehyde in cultured primary human fibroblasts. Scientific Reports. 10: 5575. PMID 32221313 DOI: 10.1038/S41598-020-61477-2 |
0.411 |
|
| 2019 |
Tomaska L, Nosek J, Kar A, Willcox S, Griffith JD. A New View of the T-Loop Junction: Implications for Self-Primed Telomere Extension, Expansion of Disease-Related Nucleotide Repeat Blocks, and Telomere Evolution. Frontiers in Genetics. 10: 792. PMID 31475042 DOI: 10.3389/Fgene.2019.00792 |
0.513 |
|
| 2019 |
Torregrosa-Muñumer R, Hangas A, Goffart S, Blei D, Zsurka G, Griffith J, Kunz WS, Pohjoismäki JLO. Replication fork rescue in mammalian mitochondria. Scientific Reports. 9: 8785. PMID 31217442 DOI: 10.1038/S41598-019-45244-6 |
0.442 |
|
| 2018 |
Tomáška Ĺ, Nosek J, Sepšiová R, Červenák F, Juríková K, Procházková K, Neboháčová M, Willcox S, Griffith JD. Commentary: Single-stranded telomere-binding protein employs a dual rheostat for binding affinity and specificity that drives function. Frontiers in Genetics. 9: 742. PMID 30697232 DOI: 10.3389/Fgene.2018.00742 |
0.405 |
|
| 2018 |
Amunugama R, Willcox S, Wu RA, Abdullah UB, El-Sagheer AH, Brown T, McHugh PJ, Griffith JD, Walter JC. Replication Fork Reversal during DNA Interstrand Crosslink Repair Requires CMG Unloading. Cell Reports. 23: 3419-3428. PMID 29924986 DOI: 10.1016/J.Celrep.2018.05.061 |
0.543 |
|
| 2018 |
Kar A, Jones N, Arat NÖ, Fishel R, Griffith J. Long repeating (TTAGGG)n single stranded DNA self-condenses into compact beaded filaments stabilized by G-quadruplex formation. The Journal of Biological Chemistry. PMID 29674319 DOI: 10.1074/Jbc.Ra118.002158 |
0.495 |
|
| 2018 |
Ciesielski GL, Nadalutti CA, Oliveira MT, Jacobs HT, Griffith JD, Kaguni LS. Structural rearrangements in the mitochondrial genome of Drosophila melanogaster induced by elevated levels of the replicative DNA helicase. Nucleic Acids Research. PMID 29432582 DOI: 10.1093/Nar/Gky094 |
0.454 |
|
| 2017 |
Nicholls TJ, Nadalutti CA, Motori E, Sommerville EW, Gorman GS, Basu S, Hoberg E, Turnbull DM, Chinnery PF, Larsson NG, Larsson E, Falkenberg M, Taylor RW, Griffith JD, Gustafsson CM. Topoisomerase 3α Is Required for Decatenation and Segregation of Human mtDNA. Molecular Cell. PMID 29290614 DOI: 10.1016/J.Molcel.2017.11.033 |
0.345 |
|
| 2017 |
Prasad R, Çağlayan M, Dai DP, Nadalutti CA, Zhao ML, Gassman NR, Janoshazi AK, Stefanick DF, Horton JK, Krasich R, Longley MJ, Copeland WC, Griffith JD, Wilson SH. DNA polymerase β: A missing link of the base excision repair machinery in mammalian mitochondria. Dna Repair. 60: 77-88. PMID 29100041 DOI: 10.1016/J.Dnarep.2017.10.011 |
0.439 |
|
| 2017 |
Bermek O, Weller SK, Griffith JD. The UL8 subunit of the helicase/primase complex of herpes simplex virus promotes DNA annealing and has a high affinity for replication forks. The Journal of Biological Chemistry. PMID 28743747 DOI: 10.1074/Jbc.M117.799064 |
0.61 |
|
| 2017 |
Erdel F, Kratz K, Willcox S, Griffith JD, Greene EC, de Lange T. Telomere Recognition and Assembly Mechanism of Mammalian Shelterin. Cell Reports. 18: 41-53. PMID 28052260 DOI: 10.1016/J.Celrep.2016.12.005 |
0.539 |
|
| 2016 |
Kar A, Willcox S, Griffith JD. Transcription of telomeric DNA leads to high levels of homologous recombination and t-loops. Nucleic Acids Research. PMID 27608724 DOI: 10.1093/Nar/Gkw779 |
0.581 |
|
| 2016 |
Sepsiova R, Necasova I, Willcox S, Prochazkova K, Gorilak P, Nosek J, Hofr C, Griffith JD, Tomaska L. Evolution of Telomeres in Schizosaccharomyces pombe and Its Possible Relationship to the Diversification of Telomere Binding Proteins. Plos One. 11: e0154225. PMID 27101289 DOI: 10.1371/Journal.Pone.0154225 |
0.568 |
|
| 2015 |
Bakkaiova J, Marini V, Willcox S, Nosek J, Griffith JD, Krejci L, Tomaska L. Yeast mitochondrial HMG proteins: DNA-binding properties of the most evolutionarily divergent component of mitochondrial nucleoids. Bioscience Reports. 36. PMID 26647378 DOI: 10.1042/Bsr20150275 |
0.444 |
|
| 2015 |
Ciesielski GL, Bermek O, Rosado-Ruiz FA, Hovde SL, Neitzke OJ, Griffith JD, Kaguni LS. Mitochondrial Single-stranded DNA-binding Proteins Stimulate the Activity of DNA Polymerase γ by Organization of the Template DNA. The Journal of Biological Chemistry. PMID 26446790 DOI: 10.1074/Jbc.M115.673707 |
0.566 |
|
| 2015 |
Dillon LW, Kumar P, Shibata Y, Wang YH, Willcox S, Griffith JD, Pommier Y, Takeda S, Dutta A. Production of Extrachromosomal MicroDNAs Is Linked to Mismatch Repair Pathways and Transcriptional Activity. Cell Reports. 11: 1749-59. PMID 26051933 DOI: 10.1016/J.Celrep.2015.05.020 |
0.521 |
|
| 2015 |
Lewis SC, Joers P, Willcox S, Griffith JD, Jacobs HT, Hyman BC. A rolling circle replication mechanism produces multimeric lariats of mitochondrial DNA in Caenorhabditis elegans. Plos Genetics. 11: e1004985. PMID 25693201 DOI: 10.1371/Journal.Pgen.1004985 |
0.521 |
|
| 2015 |
Bermek O, Willcox S, Griffith JD. DNA replication catalyzed by herpes simplex virus type 1 proteins reveals trombone loops at the fork. The Journal of Biological Chemistry. 290: 2539-45. PMID 25471368 DOI: 10.1074/Jbc.M114.623009 |
0.593 |
|
| 2014 |
Bower BD, Griffith JD. TRF1 and TRF2 differentially modulate Rad51-mediated telomeric and nontelomeric displacement loop formation in vitro. Biochemistry. 53: 5485-95. PMID 25115914 DOI: 10.1021/Bi5006249 |
0.544 |
|
| 2014 |
Ozgur S, Griffith J. Interaction of Kaposi's sarcoma-associated herpesvirus ORF6 protein with single-stranded DNA. Journal of Virology. 88: 8687-95. PMID 24850743 DOI: 10.1128/Jvi.03652-13 |
0.543 |
|
| 2014 |
Chen SH, Plank JL, Willcox S, Griffith JD, Hsieh TS. Top3α is required during the convergent migration step of double Holliday junction dissolution. Plos One. 9: e83582. PMID 24392087 DOI: 10.1371/Journal.Pone.0083582 |
0.369 |
|
| 2013 |
Bowen N, Smith CE, Srivatsan A, Willcox S, Griffith JD, Kolodner RD. Reconstitution of long and short patch mismatch repair reactions using Saccharomyces cerevisiae proteins Proceedings of the National Academy of Sciences of the United States of America. 110: 18472-18477. PMID 24187148 DOI: 10.1073/Pnas.1318971110 |
0.531 |
|
| 2013 |
Griffith JD. Many ways to loop DNA. The Journal of Biological Chemistry. 288: 29724-35. PMID 24005675 DOI: 10.1074/Jbc.X113.515981 |
0.603 |
|
| 2013 |
Lee SH, Siaw GE, Willcox S, Griffith JD, Hsieh TS. Synthesis and dissolution of hemicatenanes by type IA DNA topoisomerases. Proceedings of the National Academy of Sciences of the United States of America. 110: E3587-94. PMID 24003117 DOI: 10.1073/Pnas.1304103110 |
0.547 |
|
| 2013 |
Tolun G, Makhov AM, Ludtke SJ, Griffith JD. Details of ssDNA annealing revealed by an HSV-1 ICP8-ssDNA binary complex. Nucleic Acids Research. 41: 5927-37. PMID 23605044 DOI: 10.1093/Nar/Gkt266 |
0.843 |
|
| 2013 |
Chen SH, Plank JL, Willcox S, Griffith JD, Hsieh TS. Improved methods for creating migratable Holliday junction substrates. Nucleic Acids Research. 41: e60. PMID 23275569 DOI: 10.1093/Nar/Gks1343 |
0.529 |
|
| 2013 |
Horowitz ED, Rahman KS, Bower BD, Dismuke DJ, Falvo MR, Griffith JD, Harvey SC, Asokan A. Biophysical and ultrastructural characterization of adeno-associated virus capsid uncoating and genome release. Journal of Virology. 87: 2994-3002. PMID 23269804 DOI: 10.1128/Jvi.03017-12 |
0.387 |
|
| 2012 |
Arat NÖ, Griffith JD. Human Rap1 interacts directly with telomeric DNA and regulates TRF2 localization at the telomere. The Journal of Biological Chemistry. 287: 41583-94. PMID 23086976 DOI: 10.1074/Jbc.M112.415984 |
0.846 |
|
| 2012 |
Guo X, Kesimer M, Tolun G, Zheng X, Xu Q, Lu J, Sheehan JK, Griffith JD, Li X. The NAD(+)-dependent protein deacetylase activity of SIRT1 is regulated by its oligomeric status. Scientific Reports. 2: 640. PMID 22962634 DOI: 10.1038/Srep00640 |
0.742 |
|
| 2012 |
Visacka K, Hofr C, Willcox S, Necasova I, Pavlouskova J, Sepsiova R, Wimmerova M, Simonicova L, Nosek J, Fajkus J, Griffith JD, Tomaska L. Synergism of the two Myb domains of Tay1 protein results in high affinity binding to telomeres. The Journal of Biological Chemistry. 287: 32206-15. PMID 22815473 DOI: 10.1074/Jbc.M112.385591 |
0.502 |
|
| 2012 |
Shibata Y, Kumar P, Layer R, Willcox S, Gagan JR, Griffith JD, Dutta A. Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues. Science (New York, N.Y.). 336: 82-6. PMID 22403181 DOI: 10.1126/Science.1213307 |
0.412 |
|
| 2012 |
Amunugama R, He Y, Willcox S, Forties RA, Shim KS, Bundschuh R, Luo Y, Griffith J, Fishel R. RAD51 protein ATP cap regulates nucleoprotein filament stability. The Journal of Biological Chemistry. 287: 8724-36. PMID 22275364 DOI: 10.1074/Jbc.M111.239426 |
0.447 |
|
| 2012 |
Shibata Y, Kumar P, Layer R, Willcox S, Gagan JR, Griffith JD, Dutta A. Abstract SY23-01: Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues Cancer Research. 72. DOI: 10.1158/1538-7445.Am2012-Sy23-01 |
0.56 |
|
| 2011 |
Tanner NA, Tolun G, Loparo JJ, Jergic S, Griffith JD, Dixon NE, van Oijen AM. E. coli DNA replication in the absence of free β clamps. The Embo Journal. 30: 1830-40. PMID 21441898 DOI: 10.1038/Emboj.2011.84 |
0.841 |
|
| 2011 |
Ozgur S, Damania B, Griffith J. The Kaposi's sarcoma-associated herpesvirus ORF6 DNA binding protein forms long DNA-free helical protein filaments. Journal of Structural Biology. 174: 37-43. PMID 21047556 DOI: 10.1016/J.Jsb.2010.10.015 |
0.512 |
|
| 2010 |
Roy Chowdhury A, Bakshi R, Wang J, Yildirir G, Liu B, Pappas-Brown V, Tolun G, Griffith JD, Shapiro TA, Jensen RE, Englund PT. The killing of African trypanosomes by ethidium bromide. Plos Pathogens. 6: e1001226. PMID 21187912 DOI: 10.1371/Journal.Ppat.1001226 |
0.827 |
|
| 2010 |
Kramara J, Willcox S, Gunisova S, Kinsky S, Nosek J, Griffith JD, Tomaska L. Tay1 protein, a novel telomere binding factor from Yarrowia lipolytica. The Journal of Biological Chemistry. 285: 38078-92. PMID 20923774 DOI: 10.1074/Jbc.M110.127605 |
0.528 |
|
| 2010 |
Thorslund T, McIlwraith MJ, Compton SA, Lekomtsev S, Petronczki M, Griffith JD, West SC. The breast cancer tumor suppressor BRCA2 promotes the specific targeting of RAD51 to single-stranded DNA. Nature Structural & Molecular Biology. 17: 1263-5. PMID 20729858 DOI: 10.1038/Nsmb.1905 |
0.554 |
|
| 2010 |
Rass U, Compton SA, Matos J, Singleton MR, Ip SC, Blanco MG, Griffith JD, West SC. Mechanism of Holliday junction resolution by the human GEN1 protein. Genes & Development. 24: 1559-69. PMID 20634321 DOI: 10.1101/Gad.585310 |
0.447 |
|
| 2010 |
Compton SA, Ozgür S, Griffith JD. Ring-shaped Rad51 paralog protein complexes bind Holliday junctions and replication forks as visualized by electron microscopy. The Journal of Biological Chemistry. 285: 13349-56. PMID 20207730 DOI: 10.1074/Jbc.M109.074286 |
0.574 |
|
| 2010 |
Pohjoismäki JL, Holmes JB, Wood SR, Yang MY, Yasukawa T, Reyes A, Bailey LJ, Cluett TJ, Goffart S, Willcox S, Rigby RE, Jackson AP, Spelbrink JN, Griffith JD, Crouch RJ, et al. Mammalian mitochondrial DNA replication intermediates are essentially duplex but contain extensive tracts of RNA/DNA hybrid. Journal of Molecular Biology. 397: 1144-55. PMID 20184890 DOI: 10.1016/J.Jmb.2010.02.029 |
0.52 |
|
| 2010 |
Liu B, Yildirir G, Wang J, Tolun G, Griffith JD, Englund PT. TbPIF1, a Trypanosoma brucei mitochondrial DNA helicase, is essential for kinetoplast minicircle replication. The Journal of Biological Chemistry. 285: 7056-66. PMID 20042610 DOI: 10.1074/Jbc.M109.084038 |
0.831 |
|
| 2010 |
Basenko EY, Cesare AJ, Iyer S, Griffith JD, McEachern MJ. Telomeric circles are abundant in the stn1-M1 mutant that maintains its telomeres through recombination. Nucleic Acids Research. 38: 182-9. PMID 19858100 DOI: 10.1093/Nar/Gkp814 |
0.74 |
|
| 2010 |
Kesimer M, Makhov AM, Griffith JD, Verdugo P, Sheehan JK. Unpacking a gel-forming mucin: a view of MUC5B organization after granular release. American Journal of Physiology. Lung Cellular and Molecular Physiology. 298: L15-22. PMID 19783639 DOI: 10.1152/Ajplung.00194.2009 |
0.329 |
|
| 2010 |
Griffith JD. Chromatin structure: deduced from a minichromosome. Science (New York, N.Y.). 187: 1202-3. PMID 17754289 DOI: 10.1126/Science.187.4182.1202 |
0.502 |
|
| 2010 |
Holmes JB, Pohjoismäki JL, Yang M, Yasukawa T, Cluett TJ, Reyes A, Goffart S, Willcox S, Rigby RE, Jackson AP, Spelbrink JN, Griffith JD, Crouch RJ, Jacobs HT, Holt IJ. 89 Analysis of extensive RNA/DNA hybrids in the replicating mammalian mitochondrial genome Mitochondrion. 10: 225. DOI: 10.1016/J.Mito.2009.12.082 |
0.452 |
|
| 2009 |
Remus D, Beuron F, Tolun G, Griffith JD, Morris EP, Diffley JF. Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing. Cell. 139: 719-30. PMID 19896182 DOI: 10.1016/J.Cell.2009.10.015 |
0.847 |
|
| 2009 |
Tomaska L, Nosek J, Kramara J, Griffith JD. Telomeric circles: universal players in telomere maintenance? Nature Structural & Molecular Biology. 16: 1010-5. PMID 19809492 DOI: 10.1038/Nsmb.1660 |
0.495 |
|
| 2009 |
Pohjoismäki JL, Goffart S, Tyynismaa H, Willcox S, Ide T, Kang D, Suomalainen A, Karhunen PJ, Griffith JD, Holt IJ, Jacobs HT. Human heart mitochondrial DNA is organized in complex catenated networks containing abundant four-way junctions and replication forks. The Journal of Biological Chemistry. 284: 21446-57. PMID 19525233 DOI: 10.1074/Jbc.M109.016600 |
0.424 |
|
| 2009 |
Randall A, Griffith JD. Structure of long telomeric RNA transcripts: the G-rich RNA forms a compact repeating structure containing G-quartets. The Journal of Biological Chemistry. 284: 13980-6. PMID 19329435 DOI: 10.1074/Jbc.M900631200 |
0.331 |
|
| 2009 |
Manolaridis I, Mumtsidu E, Konarev P, Makhov AM, Fullerton SW, Sinz A, Kalkhof S, McGeehan JE, Cary PD, Griffith JD, Svergun D, Kneale GG, Tucker PA. Structural and biophysical characterization of the proteins interacting with the herpes simplex virus 1 origin of replication. The Journal of Biological Chemistry. 284: 16343-53. PMID 19329432 DOI: 10.1074/Jbc.M806134200 |
0.564 |
|
| 2009 |
Makhov AM, Sen A, Yu X, Simon MN, Griffith JD, Egelman EH. The bipolar filaments formed by herpes simplex virus type 1 SSB/recombination protein (ICP8) suggest a mechanism for DNA annealing. Journal of Molecular Biology. 386: 273-9. PMID 19138689 DOI: 10.1016/J.Jmb.2008.12.059 |
0.526 |
|
| 2009 |
Räschle M, Knipscheer P, Enoiu M, Angelov T, Sun J, Griffith JD, Ellenberger TE, Schärer OD, Walter JC. Mechanism of Replication-Coupled DNA Interstrand Crosslink Repair (DOI:10.1016/j.cell.2008.08.030) Cell. 137: 972. DOI: 10.1016/J.Cell.2009.05.009 |
0.511 |
|
| 2008 |
Räschle M, Knipscheer P, Knipsheer P, Enoiu M, Angelov T, Sun J, Griffith JD, Ellenberger TE, Schärer OD, Walter JC. Mechanism of replication-coupled DNA interstrand crosslink repair. Cell. 134: 969-80. PMID 18805090 DOI: 10.1016/J.Cell.2008.08.030 |
0.583 |
|
| 2008 |
Compton SA, Tolun G, Kamath-Loeb AS, Loeb LA, Griffith JD. The Werner syndrome protein binds replication fork and Holliday junction DNAs as an oligomer Journal of Biological Chemistry. 283: 24478-24483. PMID 18596042 DOI: 10.1074/Jbc.M803370200 |
0.861 |
|
| 2008 |
Raices M, Verdun RE, Compton SA, Haggblom CI, Griffith JD, Dillin A, Karlseder J. C. elegans telomeres contain G-strand and C-strand overhangs that are bound by distinct proteins. Cell. 132: 745-57. PMID 18329362 DOI: 10.1016/J.Cell.2007.12.039 |
0.488 |
|
| 2008 |
Etheridge KT, Compton SA, Barrientos KS, Ozgur S, Griffith JD, Counter CM. Tethering telomeric double- and single-stranded DNA-binding proteins inhibits telomere elongation. The Journal of Biological Chemistry. 283: 6935-41. PMID 18178559 DOI: 10.1074/Jbc.M708711200 |
0.574 |
|
| 2008 |
Mumtsidu E, Makhov AM, Konarev PV, Svergun DI, Griffith JD, Tucker PA. Structural features of the single-stranded DNA-binding protein of Epstein-Barr virus. Journal of Structural Biology. 161: 172-87. PMID 18068378 DOI: 10.1016/J.Jsb.2007.10.014 |
0.53 |
|
| 2008 |
Sim J, Ozgur S, Lin BY, Yu JH, Broker TR, Chow LT, Griffith J. Remodeling of the Human Papillomavirus Type 11 Replication Origin into Discrete Nucleoprotein Particles and Looped Structures by the E2 Protein Journal of Molecular Biology. 375: 1165-1177. PMID 18067922 DOI: 10.1016/J.Jmb.2007.11.004 |
0.539 |
|
| 2008 |
Cesare AJ, Groff-Vindman C, Compton SA, McEachern MJ, Griffith JD. Telomere loops and homologous recombination-dependent telomeric circles in a Kluyveromyces lactis telomere mutant strain. Molecular and Cellular Biology. 28: 20-9. PMID 17967889 DOI: 10.1128/Mcb.01122-07 |
0.768 |
|
| 2007 |
Kuo HK, Griffith JD, Kreuzer KN. 5-Azacytidine induced methyltransferase-DNA adducts block DNA replication in vivo. Cancer Research. 67: 8248-54. PMID 17804739 DOI: 10.1158/0008-5472.Can-07-1038 |
0.562 |
|
| 2007 |
Yuan Y, Compton SA, Sobczak K, Stenberg MG, Thornton CA, Griffith JD, Swanson MS. Muscleblind-like 1 interacts with RNA hairpins in splicing target and pathogenic RNAs. Nucleic Acids Research. 35: 5474-86. PMID 17702765 DOI: 10.1093/Nar/Gkm601 |
0.327 |
|
| 2007 |
Smith CR, DePrince RB, Dackor J, Weigl D, Griffith J, Persmark M. Separation of topological forms of plasmid DNA by anion-exchange HPLC: shifts in elution order of linear DNA. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 854: 121-7. PMID 17481973 DOI: 10.1016/J.Jchromb.2007.04.005 |
0.491 |
|
| 2007 |
Compton SA, Choi JH, Cesare AJ, Ozgür S, Griffith JD. Xrcc3 and Nbs1 are required for the production of extrachromosomal telomeric circles in human alternative lengthening of telomere cells. Cancer Research. 67: 1513-9. PMID 17308089 DOI: 10.1158/0008-5472.Can-06-3672 |
0.697 |
|
| 2007 |
Nossal NG, Makhov AM, Chastain PD, Jones CE, Griffith JD. Architecture of the bacteriophage T4 replication complex revealed with nanoscale biopointers. The Journal of Biological Chemistry. 282: 1098-108. PMID 17105722 DOI: 10.1074/Jbc.M606772200 |
0.581 |
|
| 2006 |
Fouché N, Ozgür S, Roy D, Griffith JD. Replication fork regression in repetitive DNAs. Nucleic Acids Research. 34: 6044-50. PMID 17071963 DOI: 10.1093/Nar/Gkl757 |
0.854 |
|
| 2006 |
Fouché N, Cesare AJ, Willcox S, Ozgür S, Compton SA, Griffith JD. The basic domain of TRF2 directs binding to DNA junctions irrespective of the presence of TTAGGG repeats. The Journal of Biological Chemistry. 281: 37486-95. PMID 17052985 DOI: 10.1074/Jbc.M608778200 |
0.822 |
|
| 2006 |
Fouché N, Moon IK, Keppler BR, Griffith JD, Jarstfer MB. Electron microscopic visualization of telomerase from Euplotes aediculatus bound to a model telomere DNA. Biochemistry. 45: 9624-31. PMID 16878997 DOI: 10.1021/Bi060313S |
0.61 |
|
| 2006 |
Liu B, Molina H, Kalume D, Pandey A, Griffith JD, Englund PT. Role of p38 in replication of Trypanosoma brucei kinetoplast DNA. Molecular and Cellular Biology. 26: 5382-93. PMID 16809774 DOI: 10.1128/Mcb.00369-06 |
0.724 |
|
| 2006 |
Makhov AM, Griffith JD. Visualization of the annealing of complementary single-stranded DNA catalyzed by the herpes simplex virus type 1 ICP8 SSB/recombinase. Journal of Molecular Biology. 355: 911-22. PMID 16343538 DOI: 10.1016/J.Jmb.2005.11.022 |
0.576 |
|
| 2006 |
Ji Y, Gu J, Makhov AM, Griffith JD, Mitchell BS. Regulation of the interaction of inosine monophosphate dehydrogenase with mycophenolic Acid by GTP. The Journal of Biological Chemistry. 281: 206-12. PMID 16243838 DOI: 10.1074/Jbc.M507056200 |
0.332 |
|
| 2006 |
Weigl D, Molloy MJ, Clayton TM, Griffith J, Smith CR, Steward T, Merrill BM, Deprince RB, Jone CS, Persmark M. Characterization of a topologically aberrant plasmid population from pilot-scale production of clinical-grade DNA. Journal of Biotechnology. 121: 1-12. PMID 16150507 DOI: 10.1016/J.Jbiotec.2005.06.019 |
0.479 |
|
| 2005 |
Martin M, Cho J, Cesare AJ, Griffith JD, Attardi G. Termination factor-mediated DNA loop between termination and initiation sites drives mitochondrial rRNA synthesis. Cell. 123: 1227-40. PMID 16377564 DOI: 10.1016/J.Cell.2005.09.040 |
0.706 |
|
| 2005 |
Subramanian D, Griffith JD. p53 Monitors replication fork regression by binding to "chickenfoot" intermediates. The Journal of Biological Chemistry. 280: 42568-72. PMID 16204246 DOI: 10.1074/Jbc.M506348200 |
0.457 |
|
| 2005 |
Groff-Vindman C, Cesare AJ, Natarajan S, Griffith JD, McEachern MJ. Recombination at long mutant telomeres produces tiny single- and double-stranded telomeric circles. Molecular and Cellular Biology. 25: 4406-12. PMID 15899847 DOI: 10.1128/Mcb.25.11.4406-4412.2005 |
0.776 |
|
| 2005 |
Subramanian D, Griffith JD. Modulation of p53 binding to Holliday junctions and 3-cytosine bulges by phosphorylation events. Biochemistry. 44: 2536-44. PMID 15709766 DOI: 10.1021/Bi048700U |
0.46 |
|
| 2005 |
Nosek J, Rycovska A, Makhov AM, Griffith JD, Tomaska L. Amplification of telomeric arrays via rolling-circle mechanism. The Journal of Biological Chemistry. 280: 10840-5. PMID 15657051 DOI: 10.1074/Jbc.M409295200 |
0.489 |
|
| 2005 |
Grove DE, Willcox S, Griffith JD, Bryant FR. Differential single-stranded DNA binding properties of the paralogous SsbA and SsbB proteins from Streptococcus pneumoniae. The Journal of Biological Chemistry. 280: 11067-73. PMID 15647253 DOI: 10.1074/Jbc.M414057200 |
0.446 |
|
| 2004 |
Cesare AJ, Griffith JD. Telomeric DNA in ALT cells is characterized by free telomeric circles and heterogeneous t-loops. Molecular and Cellular Biology. 24: 9948-57. PMID 15509797 DOI: 10.1128/Mcb.24.22.9948-9957.2004 |
0.776 |
|
| 2004 |
Makhov AM, Taylor DW, Griffith JD. Two-dimensional crystallization of herpes simplex virus type 1 single-stranded DNA-binding protein, ICP8, on a lipid monolayer. Biochimica Et Biophysica Acta. 1701: 101-8. PMID 15450179 DOI: 10.1016/J.Bbapap.2004.06.006 |
0.383 |
|
| 2004 |
Tomaska L, Willcox S, Slezakova J, Nosek J, Griffith JD. Taz1 binding to a fission yeast model telomere: formation of telomeric loops and higher order structures. The Journal of Biological Chemistry. 279: 50764-72. PMID 15383525 DOI: 10.1074/Jbc.M409790200 |
0.623 |
|
| 2004 |
Reuven NB, Willcox S, Griffith JD, Weller SK. Catalysis of strand exchange by the HSV-1 UL12 and ICP8 proteins: potent ICP8 recombinase activity is revealed upon resection of dsDNA substrate by nuclease. Journal of Molecular Biology. 342: 57-71. PMID 15313607 DOI: 10.1016/J.Jmb.2004.07.012 |
0.592 |
|
| 2004 |
Makhov AM, Subramanian D, Holley-Guthrie E, Kenney SC, Griffith JD. The Epstein-Barr virus polymerase accessory factor BMRF1 adopts a ring-shaped structure as visualized by electron microscopy. The Journal of Biological Chemistry. 279: 40358-61. PMID 15286084 DOI: 10.1074/Jbc.M408733200 |
0.387 |
|
| 2004 |
Sar F, Lindsey-Boltz LA, Subramanian D, Croteau DL, Hutsell SQ, Griffith JD, Sancar A. Human claspin is a ring-shaped DNA-binding protein with high affinity to branched DNA structures. The Journal of Biological Chemistry. 279: 39289-95. PMID 15226314 DOI: 10.1074/Jbc.M405793200 |
0.619 |
|
| 2004 |
Chastain PD, Bowers JL, Lee DG, Bell SP, Griffith JD. Mapping subunit location on the Saccharomyces cerevisiae origin recognition complex free and bound to DNA using a novel nanoscale biopointer Journal of Biological Chemistry. 279: 36354-36362. PMID 15201282 DOI: 10.1074/Jbc.M403501200 |
0.484 |
|
| 2003 |
Cesare AJ, Quinney N, Willcox S, Subramanian D, Griffith JD. Telomere looping in P. sativum (common garden pea). The Plant Journal : For Cell and Molecular Biology. 36: 271-9. PMID 14535890 DOI: 10.1046/J.1365-313X.2003.01882.X |
0.799 |
|
| 2003 |
He ZG, Rezende LF, Willcox S, Griffith JD, Richardson CC. The carboxyl-terminal domain of bacteriophage T7 single-stranded DNA-binding protein modulates DNA binding and interaction with T7 DNA polymerase. The Journal of Biological Chemistry. 278: 29538-45. PMID 12766155 DOI: 10.1074/Jbc.M304318200 |
0.711 |
|
| 2003 |
Rezende LF, Willcox S, Griffith JD, Richardson CC. A single-stranded DNA-binding protein of bacteriophage T7 defective in DNA annealing. The Journal of Biological Chemistry. 278: 29098-105. PMID 12748198 DOI: 10.1074/Jbc.M303374200 |
0.695 |
|
| 2003 |
Chastain PD, Makhov AM, Nossal NG, Griffith J. Architecture of the replication complex and DNA loops at the fork generated by the bacteriophage t4 proteins. The Journal of Biological Chemistry. 278: 21276-85. PMID 12649286 DOI: 10.1074/Jbc.M301573200 |
0.617 |
|
| 2003 |
Bermudez VP, Lindsey-Boltz LA, Cesare AJ, Maniwa Y, Griffith JD, Hurwitz J, Sancar A. Loading of the human 9-1-1 checkpoint complex onto DNA by the checkpoint clamp loader hRad17-replication factor C complex in vitro. Proceedings of the National Academy of Sciences of the United States of America. 100: 1633-8. PMID 12578958 DOI: 10.1073/Pnas.0437927100 |
0.795 |
|
| 2003 |
Makhov AM, Lee SS, Lehman IR, Griffith JD. Origin-specific unwinding of herpes simplex virus 1 DNA by the viral UL9 and ICP8 proteins: visualization of a specific preunwinding complex. Proceedings of the National Academy of Sciences of the United States of America. 100: 898-903. PMID 12552114 DOI: 10.1073/Pnas.0237171100 |
0.753 |
|
| 2003 |
Tomáška Ľ, Sadovská J, Nosek J, Griffith JD. Yeast telomeres: how to ignore essential double-strand DNA breaks? Journal of Applied Biomedicine. 1: 189-198. DOI: 10.32725/Jab.2003.035 |
0.583 |
|
| 2002 |
Tomaska L, Makhov AM, Griffith JD, Nosek J. t-Loops in yeast mitochondria. Mitochondrion. 1: 455-9. PMID 16120298 DOI: 10.1016/S1567-7249(02)00009-0 |
0.453 |
|
| 2002 |
Zhou Z, Sim J, Griffith J, Reed R. Purification and electron microscopic visualization of functional human spliceosomes. Proceedings of the National Academy of Sciences of the United States of America. 99: 12203-7. PMID 12215496 DOI: 10.1073/Pnas.182427099 |
0.304 |
|
| 2002 |
Lin BY, Makhov AM, Griffith JD, Broker TR, Chow LT. Chaperone proteins abrogate inhibition of the human papillomavirus (HPV) E1 replicative helicase by the HPV E2 protein. Molecular and Cellular Biology. 22: 6592-604. PMID 12192057 DOI: 10.1128/Mcb.22.18.6592-6604.2002 |
0.494 |
|
| 2002 |
Vetcher AA, Napierala M, Iyer RR, Chastain PD, Griffith JD, Wells RD. Sticky DNA, a long GAA.GAA.TTC triplex that is formed intramolecularly, in the sequence of intron 1 of the frataxin gene. The Journal of Biological Chemistry. 277: 39217-27. PMID 12161437 DOI: 10.1074/Jbc.M205209200 |
0.524 |
|
| 2002 |
Yang Q, Zhang R, Wang XW, Spillare EA, Linke SP, Subramanian D, Griffith JD, Li JL, Hickson ID, Shen JC, Loeb LA, Mazur SJ, Appella E, Brosh RM, Karmakar P, et al. The processing of Holliday junctions by BLM and WRN helicases is regulated by p53. The Journal of Biological Chemistry. 277: 31980-7. PMID 12080066 DOI: 10.1074/Jbc.M204111200 |
0.572 |
|
| 2002 |
DeFazio LG, Stansel RM, Griffith JD, Chu G. Synapsis of DNA ends by DNA-dependent protein kinase. The Embo Journal. 21: 3192-200. PMID 12065431 DOI: 10.1093/Emboj/Cdf299 |
0.847 |
|
| 2002 |
Subramanian D, Griffith JD. Interactions between p53, hMSH2-hMSH6 and HMG I(Y) on Holliday junctions and bulged bases. Nucleic Acids Research. 30: 2427-34. PMID 12034830 DOI: 10.1093/Nar/30.11.2427 |
0.482 |
|
| 2002 |
Unsal-Kaçmaz K, Makhov AM, Griffith JD, Sancar A. Preferential binding of ATR protein to UV-damaged DNA. Proceedings of the National Academy of Sciences of the United States of America. 99: 6673-8. PMID 12011431 DOI: 10.1073/Pnas.102167799 |
0.559 |
|
| 2002 |
Griffith JD, Lindsey-Boltz LA, Sancar A. Structures of the human Rad17-replication factor C and checkpoint Rad 9-1-1 complexes visualized by glycerol spray/low voltage microscopy. The Journal of Biological Chemistry. 277: 15233-6. PMID 11907025 DOI: 10.1074/Jbc.C200129200 |
0.441 |
|
| 2002 |
Stansel RM, Subramanian D, Griffith JD. p53 binds telomeric single strand overhangs and t-loop junctions in vitro. The Journal of Biological Chemistry. 277: 11625-8. PMID 11859067 DOI: 10.1074/Jbc.C100764200 |
0.832 |
|
| 2002 |
Lee J, Chastain PD, Griffith JD, Richardson CC. Lagging strand synthesis in coordinated DNA synthesis by bacteriophage t7 replication proteins. Journal of Molecular Biology. 316: 19-34. PMID 11829500 DOI: 10.1006/Jmbi.2001.5325 |
0.688 |
|
| 2001 |
Stansel RM, de Lange T, Griffith JD. T-loop assembly in vitro involves binding of TRF2 near the 3' telomeric overhang. The Embo Journal. 20: 5532-40. PMID 11574485 DOI: 10.1093/Emboj/20.19.5532 |
0.836 |
|
| 2001 |
Vologodskii AV, Zhang W, Rybenkov VV, Podtelezhnikov AA, Subramanian D, Griffith JD, Cozzarelli NR. Mechanism of topology simplification by type II DNA topoisomerases. Proceedings of the National Academy of Sciences of the United States of America. 98: 3045-9. PMID 11248029 DOI: 10.1073/Pnas.061029098 |
0.732 |
|
| 2001 |
Muñoz-Jordán JL, Cross GA, de Lange T, Griffith JD. t-loops at trypanosome telomeres. The Embo Journal. 20: 579-88. PMID 11157764 DOI: 10.1093/Emboj/20.3.579 |
0.467 |
|
| 2001 |
Degtyareva N, Subramanian D, Griffith JD. Analysis of the Binding of p53 to DNAs Containing Mismatched and Bulged Bases Journal of Biological Chemistry. 276: 8778-8784. PMID 11124254 DOI: 10.1074/Jbc.M006795200 |
0.537 |
|
| 2001 |
Tomaska L, Makhov AM, Nosek J, Kucejova B, Griffith JD. Electron microscopic analysis supports a dual role for the mitochondrial telomere-binding protein of Candida parapsilosis. Journal of Molecular Biology. 305: 61-9. PMID 11114247 DOI: 10.1006/Jmbi.2000.4254 |
0.464 |
|
| 2000 |
Chastain PD, Makhov AM, Nossal NG, Griffith JD. Analysis of the Okazaki fragment distributions along single long DNAs replicated by the bacteriophage T4 proteins. Molecular Cell. 6: 803-14. PMID 11090619 DOI: 10.1016/S1097-2765(05)00093-6 |
0.617 |
|
| 2000 |
Tomaska L, Nosek J, Makhov AM, Pastorakova A, Griffith JD. Extragenomic double-stranded DNA circles in yeast with linear mitochondrial genomes: potential involvement in telomere maintenance. Nucleic Acids Research. 28: 4479-87. PMID 11071936 DOI: 10.1093/Nar/28.22.4479 |
0.504 |
|
| 2000 |
Lee DG, Makhov AM, Klemm RD, Griffith JD, Bell SP. Regulation of origin recognition complex conformation and ATPase activity: differential effects of single-stranded and double-stranded DNA binding. The Embo Journal. 19: 4774-82. PMID 10970868 DOI: 10.1093/Emboj/19.17.4774 |
0.625 |
|
| 2000 |
Bagga R, Michalowski S, Sabnis R, Griffith JD, Emerson BM. HMG I/Y regulates long-range enhancer-dependent transcription on DNA and chromatin by changes in DNA topology Nucleic Acids Research. 28: 2541-2550. PMID 10871404 DOI: 10.1093/Nar/28.13.2541 |
0.547 |
|
| 1999 |
Kirkpatrick DT, Wang YH, Dominska M, Griffith JD, Petes TD. Control of meiotic recombination and gene expression in yeast by a simple repetitive DNA sequence that excludes nucleosomes Molecular and Cellular Biology. 19: 7661-7671. PMID 10523654 DOI: 10.1128/Mcb.19.11.7661 |
0.363 |
|
| 1999 |
Bianchi A, Stansel RM, Fairall L, Griffith JD, Rhodes D, De Lange T. TRF1 binds a bipartite telomeric site with extreme spatial flexibility Embo Journal. 18: 5735-5744. PMID 10523316 DOI: 10.1093/Emboj/18.20.5735 |
0.826 |
|
| 1999 |
Michalowski S, Miller JW, Urbinati CR, Paliouras M, Swanson MS, Griffith J. Visualization of double-stranded RNAs from the myotonic dystrophy protein kinase gene and interactions with CUG-binding protein Nucleic Acids Research. 27: 3534-3542. PMID 10446244 DOI: 10.1093/Nar/27.17.3534 |
0.355 |
|
| 1999 |
Cordeiro-Stone M, Makhov AM, Zaritskaya LS, Griffith JD. Analysis of DNA replication forks encountering a pyrimidine dimer in the template to the leading strand. Journal of Molecular Biology. 289: 1207-18. PMID 10373362 DOI: 10.1006/Jmbi.1999.2847 |
0.62 |
|
| 1999 |
Griffith J, Michalowski S, Makhov AM. Electron microscopy of DNA-protein complexes and chromatin. Methods in Enzymology. 304: 214-230. PMID 10372362 DOI: 10.1016/S0076-6879(99)04013-6 |
0.501 |
|
| 1999 |
Griffith JD, Comeau L, Rosenfield S, Stansel RM, Bianchi A, Moss H, de Lange T. Mammalian telomeres end in a large duplex loop. Cell. 97: 503-14. PMID 10338214 DOI: 10.1016/S0092-8674(00)80760-6 |
0.838 |
|
| 1999 |
Sakamoto N, Chastain PD, Parniewski P, Ohshima K, Pandolfo M, Griffith JD, Wells RD. Sticky DNA: self-association properties of long GAA.TTC repeats in R.R.Y triplex structures from Friedreich's ataxia. Molecular Cell. 3: 465-75. PMID 10230399 DOI: 10.1016/S1097-2765(00)80474-8 |
0.481 |
|
| 1999 |
Cherepanov P, Surratt D, Toelen J, Pluymers W, Griffith J, De Clercq E, Debyser Z. Activity of recombinant HIV-1 integrase on mini-HIV DNA. Nucleic Acids Research. 27: 2202-10. PMID 10219094 DOI: 10.1093/Nar/27.10.2202 |
0.434 |
|
| 1999 |
Gradia S, Subramanian D, Wilson T, Acharya S, Makhov A, Griffith J, Fishel R. hMSH2-hMSH6 forms a hydrolysis-independent sliding clamp on mismatched DNA Molecular Cell. 3: 255-261. PMID 10078208 DOI: 10.1016/S1097-2765(00)80316-0 |
0.59 |
|
| 1999 |
Marsischky GT, Lee S, Griffith J, Kolodner RD. 'Saccharomyces cerevisiae MSH2/6 complex interacts with Holliday junctions and facilitates their cleavage by phage resolution enzymes Journal of Biological Chemistry. 274: 7200-7206. PMID 10066781 DOI: 10.1074/Jbc.274.11.7200 |
0.428 |
|
| 1998 |
Liu JS, Kuo SR, Makhov AM, Cyr DM, Griffith JD, Broker TR, Chow LT. Human Hsp70 and Hsp40 chaperone proteins facilitate human papillomavirus-11 E1 protein binding to the origin and stimulate cell-free DNA replication. The Journal of Biological Chemistry. 273: 30704-12. PMID 9804845 DOI: 10.1074/Jbc.273.46.30704 |
0.481 |
|
| 1998 |
Lee J, Chastain PD, Kusakabe T, Griffith JD, Richardson CC. Coordinated leading and lagging strand DNA synthesis on a minicircular template Molecular Cell. 1: 1001-1010. PMID 9651583 DOI: 10.1016/S1097-2765(00)80100-8 |
0.724 |
|
| 1998 |
Griffith J, Bianchi A, De Lange T. TRF1 promotes parallel pairing of telomeric tracts in vitro Journal of Molecular Biology. 278: 79-88. PMID 9571035 DOI: 10.1006/Jmbi.1998.1686 |
0.626 |
|
| 1998 |
Park K, Debyser Z, Tabor S, Richardson CC, Griffith JD. Formation of a DNA loop at the replication fork generated by bacteriophage T7 replication proteins. The Journal of Biological Chemistry. 273: 5260-70. PMID 9478983 DOI: 10.1074/Jbc.273.9.5260 |
0.731 |
|
| 1998 |
Pearson CE, Wang YH, Griffith JD, Sinden RR. Structural analysis of slipped-strand DNA (S-DNA) formed in (CTG)n. (CAG)n repeats from the myotonic dystrophy locus. Nucleic Acids Research. 26: 816-23. PMID 9443975 DOI: 10.1093/Nar/26.3.816 |
0.592 |
|
| 1997 |
Kim TK, Lagrange T, Wang YH, Griffith JD, Reinberg D, Ebright RH. Trajectory of DNA in the RNA polymerase II transcription preinitiation complex Proceedings of the National Academy of Sciences of the United States of America. 94: 12268-12273. PMID 9356438 DOI: 10.1073/Pnas.94.23.12268 |
0.569 |
|
| 1997 |
Allen DJ, Makhov A, Grilley M, Taylor J, Thresher R, Modrich P, Griffith JD. MutS mediates heteroduplex loop formation by a translocation mechanism Embo Journal. 16: 4467-4476. PMID 9250691 DOI: 10.1093/Emboj/16.14.4467 |
0.524 |
|
| 1997 |
Kong D, Griffith JD, Richardson CC. Gene 4 helicase of bacteriophage T7 mediates strand transfer through pyrimidine dimers, mismatches, and nonhomologous regions Proceedings of the National Academy of Sciences of the United States of America. 94: 2987-2992. PMID 9096333 DOI: 10.1073/Pnas.94.7.2987 |
0.673 |
|
| 1997 |
Lee S, Cavallo L, Griffith J. Human p53 Binds Holliday Junctions Strongly and Facilitates Their Cleavage Journal of Biological Chemistry. 272: 7532-7539. PMID 9054458 DOI: 10.1074/Jbc.272.11.7532 |
0.519 |
|
| 1997 |
Alani E, Lee S, Kane MF, Griffith J, Kolodner RD. Saccharomyces cerevisiae MSH2, a mispaired base recognition protein, also recognizes holliday junctions in DNA Journal of Molecular Biology. 265: 289-301. PMID 9018043 DOI: 10.1006/Jmbi.1996.0743 |
0.611 |
|
| 1996 |
Wang YH, Gellibolian R, Shimizu M, Wells RD, Griffith J. Long CCG triplet repeat blocks exclude nucleosomes: a possible mechanism for the nature of fragile sites in chromosomes. Journal of Molecular Biology. 263: 511-6. PMID 8918933 DOI: 10.1006/Jmbi.1996.0593 |
0.387 |
|
| 1996 |
Wang YH, Griffith JD. The [(G/C)3NN]n motif: a common DNA repeat that excludes nucleosomes. Proceedings of the National Academy of Sciences of the United States of America. 93: 8863-7. PMID 8799118 DOI: 10.1073/Pnas.93.17.8863 |
0.5 |
|
| 1996 |
Stevens SW, Griffith JD. Sequence analysis of the human DNA flanking sites of human immunodeficiency virus type 1 integration. Journal of Virology. 70: 6459-62. PMID 8709282 DOI: 10.1128/Jvi.70.9.6459-6462.1996 |
0.698 |
|
| 1996 |
Dlakic M, Park K, Griffith JD, Harvey SC, Harrington RE. The organic crystallizing agent 2-methyl-2,4-pentanediol reduces DNA curvature by means of structural changes in A-tracts. The Journal of Biological Chemistry. 271: 17911-9. PMID 8663567 DOI: 10.1074/Jbc.271.30.17911 |
0.536 |
|
| 1996 |
Makhov AM, Boehmer PE, Lehman IR, Griffith JD. Visualization of the unwinding of long DNA chains by the herpes simplex virus type 1 UL9 protein and ICP8. Journal of Molecular Biology. 258: 789-99. PMID 8637010 DOI: 10.1006/Jmbi.1996.0287 |
0.713 |
|
| 1996 |
Stanfield-Oakley SA, Griffith JD. Nucleosomal arrangement of HIV-1 DNA: maps generated from an integrated genome and an EBV-based episomal model. Journal of Molecular Biology. 256: 503-16. PMID 8604134 DOI: 10.1006/Jmbi.1996.0104 |
0.418 |
|
| 1996 |
Skaliter R, Makhov AM, Griffith JD, Lehman IR. Rolling circle DNA replication by extracts of herpes simplex virus type 1-infected human cells. Journal of Virology. 70: 1132-6. PMID 8551573 DOI: 10.1128/Jvi.70.2.1132-1136.1996 |
0.716 |
|
| 1996 |
Wang Y, Griffith J. Methylation of Expanded CCG Triplet Repeat DNA from Fragile X Syndrome Patients Enhances Nucleosome Exclusion Journal of Biological Chemistry. 271: 22937-22940. DOI: 10.1074/Jbc.271.38.22937 |
0.495 |
|
| 1996 |
Makhov AM, Boehmer PE, Lehman IR, Griffith JD. The herpes simplex virus type 1 origin-binding protein carries out origin specific DNA unwinding and forms stem-loop structures. The Embo Journal. 15: 1742-1750. DOI: 10.1002/J.1460-2075.1996.Tb00520.X |
0.752 |
|
| 1995 |
Harvey SC, Dlakic M, Griffith J, Harrington R, Park K, Sprous D, Zacharias W. What is the basis of sequence-directed curvature in DNAs containing A tracts? Journal of Biomolecular Structure & Dynamics. 13: 301-7. PMID 8579789 DOI: 10.1080/07391102.1995.10508841 |
0.512 |
|
| 1995 |
Wang YH, Griffith J. Expanded CTG triplet blocks from the myotonic dystrophy gene create the strongest known natural nucleosome positioning elements. Genomics. 25: 570-3. PMID 7789994 DOI: 10.1016/0888-7543(95)80061-P |
0.359 |
|
| 1995 |
Zeller RW, Griffith JD, Moore JG, Kirchhamer CV, Britten RJ, Davidson EH. A multimerizing transcription factor of sea urchin embryos capable of looping DNA. Proceedings of the National Academy of Sciences of the United States of America. 92: 2989-93. PMID 7708761 DOI: 10.1073/Pnas.92.7.2989 |
0.39 |
|
| 1995 |
Notarnicola SM, Park K, Griffith JD, Richardson CC. A domain of the gene 4 helicase/primase of bacteriophage T7 required for the formation of an active hexamer Journal of Biological Chemistry. 270: 20215-20224. PMID 7650041 DOI: 10.1074/Jbc.270.34.20215 |
0.639 |
|
| 1995 |
Lee S, Elenbaas B, Levine A, Griffith J. p53 and its 14 kDa C-terminal domain recognize primary DNA damage in the form of insertion/deletion mismatches Cell. 81: 1013-1020. PMID 7600570 DOI: 10.1016/S0092-8674(05)80006-6 |
0.569 |
|
| 1995 |
Griffith JD, Makhov A, Zawel L, Reinberg D. Visualization of TBP oligomers binding and bending the HIV-1 and adeno promoters. Journal of Molecular Biology. 246: 576-84. PMID 7533216 DOI: 10.1016/S0022-2836(05)80107-X |
0.578 |
|
| 1995 |
Thresher RJ, Makhov AM, Hall SD, Kolodner R, Griffith JD. Electron microscopic visualization of RecT protein and its complexes with DNA Journal of Molecular Biology. 254: 364-371. PMID 7490755 DOI: 10.1006/Jmbi.1995.0623 |
0.494 |
|
| 1994 |
Stevens SW, Griffith JD. Human immunodeficiency virus type 1 may preferentially integrate into chromatin occupied by L1Hs repetitive elements. Proceedings of the National Academy of Sciences of the United States of America. 91: 5557-61. PMID 8202527 DOI: 10.1073/Pnas.91.12.5557 |
0.694 |
|
| 1994 |
Hsu DS, Takahashi M, Delagoutte E, Bertrand-Burggraf E, Wang YH, Norden B, Fuchs RP, Griffith J, Sancar A. Flow linear dichroism and electron microscopic analysis of protein-DNA complexes of a mutant UvrB protein that binds to but cannot kink DNA. Journal of Molecular Biology. 241: 645-50. PMID 8071991 DOI: 10.1006/Jmbi.1994.1541 |
0.604 |
|
| 1994 |
Griffith J, Makhov A, Santiago-Lara L, Setlow P. Electron microscopic studies of the interaction between a Bacillus subtilis alpha/beta-type small, acid-soluble spore protein with DNA: protein binding is cooperative, stiffens the DNA, and induces negative supercoiling. Proceedings of the National Academy of Sciences of the United States of America. 91: 8224-8. PMID 8058784 DOI: 10.1073/Pnas.91.17.8224 |
0.624 |
|
| 1994 |
Wang YH, Amirhaeri S, Kang S, Wells RD, Griffith JD. Preferential nucleosome assembly at DNA triplet repeats from the myotonic dystrophy gene. Science (New York, N.Y.). 265: 669-71. PMID 8036515 DOI: 10.1126/Science.8036515 |
0.535 |
|
| 1994 |
Fishel R, Ewel A, Lee S, Lescoe MK, Griffith J. Binding of mismatched microsatellite DNA sequences by the human MSH2 protein Science. 266: 1403-1405. PMID 7973733 DOI: 10.1126/Science.7973733 |
0.592 |
|
| 1994 |
Wang YH, Murphy FL, Cech TR, Griffith JD. Visualization of a tertiary structural domain of the Tetrahymena group I intron by electron microscopy. Journal of Molecular Biology. 236: 64-71. PMID 7508985 DOI: 10.1006/Jmbi.1994.1118 |
0.316 |
|
| 1993 |
Howard MT, Griffith JD. A cluster of strong topoisomerase II cleavage sites is located near an integrated human immunodeficiency virus. Journal of Molecular Biology. 232: 1060-8. PMID 8396647 DOI: 10.1006/Jmbi.1993.1460 |
0.493 |
|
| 1993 |
Bortner C, Hernandez TR, Lehman IR, Griffith J. Herpes simplex virus 1 single-strand DNA-binding protein (ICP8) will promote homologous pairing and strand transfer. Journal of Molecular Biology. 231: 241-50. PMID 8389882 DOI: 10.1006/Jmbi.1993.1279 |
0.741 |
|
| 1993 |
Pinsince JM, Muench KA, Bryant FR, Griffith JD. Two mutant RecA proteins possessing pH-dependent strand exchange activity exhibit pH-dependent presynaptic filament formation. Journal of Molecular Biology. 233: 59-66. PMID 8377192 DOI: 10.1006/Jmbi.1993.1484 |
0.37 |
|
| 1993 |
Crooke E, Thresher R, Hwang DS, Griffith J, Kornberg A. Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope Journal of Molecular Biology. 233: 16-24. PMID 8377183 DOI: 10.1006/Jmbi.1993.1481 |
0.617 |
|
| 1992 |
Alani E, Thresher R, Griffith JD, Kolodner RD. Characterization of DNA-binding and strand-exchange stimulation properties of y-RPA, a yeast single-strand-DNA-binding protein Journal of Molecular Biology. 227: 54-71. PMID 1522601 DOI: 10.1016/0022-2836(92)90681-9 |
0.598 |
|
| 1992 |
Pinsince JM, Griffith JD. Early stages in RecA protein-catalyzed pairing. Analysis of coaggregate formation and non-homologous DNA contacts. Journal of Molecular Biology. 228: 409-20. PMID 1453452 DOI: 10.1016/0022-2836(92)90830-D |
0.6 |
|
| 1992 |
Howard MT, Sandman K, Reeve JN, Griffith JD. HMf, a histone-related protein from the hyperthermophilic archaeon Methanothermus fervidus, binds preferentially to DNA containing phased tracts of adenines. Journal of Bacteriology. 174: 7864-7. PMID 1447158 DOI: 10.1128/Jb.174.23.7864-7867.1992 |
0.552 |
|
| 1992 |
Thresher R, Griffith J. Electron microscopic visualization of DNA and DNA-protein complexes as adjunct to biochemical studies. Methods in Enzymology. 211: 481-90. PMID 1406322 DOI: 10.1016/0076-6879(92)11026-F |
0.531 |
|
| 1992 |
Shi Q, Thresher R, Sancar A, Griffith J. Electron microscopic study of (A)BC excinuclease. DNA is sharply bent in the UvrB-DNA complex. Journal of Molecular Biology. 226: 425-432. PMID 1386387 DOI: 10.1016/0022-2836(92)90957-L |
0.6 |
|
| 1992 |
Uziel M, Munro NB, Katz DS, Vo-Dinh T, Zeighami EA, Waters MD, Griffith JD. DNA adduct formation by 12 chemicals with populations potentially suitable for molecular epidemiological studies. Mutation Research. 277: 35-90. PMID 1376441 DOI: 10.1016/0165-1110(92)90025-5 |
0.317 |
|
| 1991 |
Wang YH, Howard MT, Griffith JD. Phased adenine tracts in double-stranded RNA do not induce sequence-directed bending. Biochemistry. 30: 5443-9. PMID 2036412 DOI: 10.1021/Bi00236A017 |
0.489 |
|
| 1991 |
Wang YH, Griffith J. Effects of bulge composition and flanking sequence on the kinking of DNA by bulged bases. Biochemistry. 30: 1358-63. PMID 1991115 DOI: 10.1021/Bi00219A028 |
0.526 |
|
| 1991 |
Topal MD, Thresher RJ, Conrad M, Griffith J. NaeI endonuclease binding to pBR322 DNA induces looping. Biochemistry. 30: 2006-10. PMID 1847081 DOI: 10.1021/Bi00221A038 |
0.476 |
|
| 1991 |
Howard MT, Lee MP, Hsieh TS, Griffith JD. Drosophila topoisomerase II-DNA interactions are affected by DNA structure. Journal of Molecular Biology. 217: 53-62. PMID 1846428 DOI: 10.1016/0022-2836(91)90610-I |
0.58 |
|
| 1990 |
Heuser J, Griffith J. Visualization of RecA protein and its complexes with DNA by quick-freeze/deep-etch electron microscopy. Journal of Molecular Biology. 210: 473-84. PMID 2693735 DOI: 10.1016/0022-2836(89)90124-1 |
0.501 |
|
| 1990 |
Bortner C, Griffith J. Three-stranded paranemic joints: Architecture, topological constraints and movement Journal of Molecular Biology. 215: 623-634. PMID 2231723 DOI: 10.1016/S0022-2836(05)80173-1 |
0.593 |
|
| 1990 |
Thresher RJ, Griffith JD. Intercalators promote the binding of RecA protein to double-stranded DNA. Proceedings of the National Academy of Sciences of the United States of America. 87: 5056-60. PMID 2195545 DOI: 10.1073/Pnas.87.13.5056 |
0.501 |
|
| 1989 |
Harris LD, Griffith JD. Formation of D loops by the UvsX protein of T4 bacteriophage: a comparison of the reaction catalyzed in the presence or absence of gene 32 protein. Biochemistry. 27: 6954-9. PMID 2973808 DOI: 10.1021/Bi00418A042 |
0.456 |
|
| 1989 |
Hsieh CH, Griffith JD. Deletions of bases in one strand of duplex DNA, in contrast to single-base mismatches, produce highly kinked molecules: possible relevance to the folding of single-stranded nucleic acids. Proceedings of the National Academy of Sciences of the United States of America. 86: 4833-7. PMID 2740330 DOI: 10.1073/Pnas.86.13.4833 |
0.569 |
|
| 1989 |
Su SS, Grilley M, Thresher R, Griffith J, Modrich P. Gap formation is associated with methyl-directed mismatch correction under conditions of restricted DNA synthesis. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 31: 104-11. PMID 2687086 DOI: 10.1139/G89-020 |
0.526 |
|
| 1989 |
Harris LD, Griffith JD. UvsY protein of bacteriophage T4 is an accessory protein for in vitro catalysis of strand exchange. Journal of Molecular Biology. 206: 19-27. PMID 2522995 DOI: 10.1016/0022-2836(89)90520-2 |
0.509 |
|
| 1988 |
Thresher RJ, Christiansen G, Griffith JD. Assembly of presynaptic filaments. Factors affecting the assembly of RecA protein onto single-stranded DNA. Journal of Molecular Biology. 201: 101-13. PMID 3418694 DOI: 10.1016/0022-2836(88)90442-1 |
0.423 |
|
| 1988 |
Husain I, Griffith J, Sancar A. Thymine dimers bend DNA. Proceedings of the National Academy of Sciences of the United States of America. 85: 2558-62. PMID 3357882 DOI: 10.1073/Pnas.85.8.2558 |
0.602 |
|
| 1988 |
Shi YB, Griffith J, Gamper H, Hearst JE. Evidence for structural deformation of the DNA helix by a psoralen diadduct but not by a monoadduct. Nucleic Acids Research. 16: 8945-52. PMID 3174437 DOI: 10.1093/Nar/16.18.8945 |
0.626 |
|
| 1988 |
Brenner SL, Zlotnick A, Griffith JD. RecA protein self-assembly multiple discrete aggregation states Journal of Molecular Biology. 204: 959-972. PMID 3065521 DOI: 10.1016/0022-2836(88)90055-1 |
0.306 |
|
| 1988 |
Ryan KA, Shapiro TA, Rauch CA, Griffith JD, Englund PT. A knotted free minicircle in kinetoplast DNA. Proceedings of the National Academy of Sciences of the United States of America. 85: 5844-8. PMID 2842751 DOI: 10.1073/Pnas.85.16.5844 |
0.708 |
|
| 1988 |
Laundon CH, Griffith JD. Curved helix segments can uniquely orient the topology of supertwisted DNA. Cell. 52: 545-9. PMID 2830027 DOI: 10.1016/0092-8674(88)90467-9 |
0.568 |
|
| 1988 |
Hsieh CH, Griffith JD. The terminus of SV40 DNA replication and transcription contains a sharp sequence-directed curve. Cell. 52: 535-44. PMID 2830026 DOI: 10.1016/0092-8674(88)90466-7 |
0.579 |
|
| 1988 |
Griffith JD, Harris LD, Brenner SL. Dna Strand Exchange Critical Reviews in Biochemistry. 23: S43-S86. DOI: 10.3109/10409238809083375 |
0.61 |
|
| 1987 |
Laundon CH, Griffith JD. Cationic metals promote sequence-directed DNA bending. Biochemistry. 26: 3759-62. PMID 3651411 DOI: 10.1021/Bi00387A003 |
0.56 |
|
| 1986 |
Griffith J, Hochschild A, Ptashne M. DNA loops induced by cooperative binding of lambda repressor. Nature. 322: 750-2. PMID 3748156 DOI: 10.1038/322750A0 |
0.536 |
|
| 1986 |
Griffith J, Bleyman M, Rauch CA, Kitchin PA, Englund PT. Visualization of the bent helix in kinetoplast DNA by electron microscopy. Cell. 46: 717-24. PMID 3742596 DOI: 10.1016/0092-8674(86)90347-8 |
0.7 |
|
| 1986 |
Christiansen G, Griffith J. Visualization of the paranemic joining of homologous DNA molecules catalyzed by the RecA protein of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 83: 2066-70. PMID 3515345 DOI: 10.1073/Pnas.83.7.2066 |
0.553 |
|
| 1986 |
Register JC, Griffith J. RecA protein filaments can juxtapose DNA ends: an activity that may reflect a function in DNA repair. Proceedings of the National Academy of Sciences of the United States of America. 83: 624-8. PMID 2418438 DOI: 10.1073/pnas.83.3.624 |
0.537 |
|
| 1985 |
Griffith JD, Harris LD, Register J. Visualization of SSB-ssDNA complexes active in the assembly of stable RecA-DNA filaments. Cold Spring Harbor Symposia On Quantitative Biology. 49: 553-9. PMID 6397310 DOI: 10.1101/Sqb.1984.049.01.062 |
0.527 |
|
| 1985 |
Sperrazza JM, Register JC, Griffith J. Electron microscopy can be used to measure DNA supertwisting. Gene. 31: 17-22. PMID 6098522 DOI: 10.1016/0378-1119(84)90190-2 |
0.576 |
|
| 1985 |
Manning M, Griffith J. Association of M13 I-forms and spheroids with lipid vesicles. Archives of Biochemistry and Biophysics. 236: 297-303. PMID 3966795 DOI: 10.1016/0003-9861(85)90629-0 |
0.335 |
|
| 1985 |
Griffith J, Shores CG. RecA Protein Rapidly Crystallizes in the Presence of Spermidine: A Valuable Step in Its Purification and Physical Characterization Biochemistry. 24: 158-162. PMID 3888255 DOI: 10.1021/Bi00322A022 |
0.347 |
|
| 1985 |
Griffith JD, Nash HA. Genetic rearrangement of DNA induces knots with a unique topology: implications for the mechanism of synapsis and crossing-over. Proceedings of the National Academy of Sciences of the United States of America. 82: 3124-8. PMID 3159013 DOI: 10.1073/pnas.82.10.3124 |
0.441 |
|
| 1985 |
Register JC, Griffith J. 10 nm RecA protein filaments formed in the presence of Mg2+ and ATPγS may contain RNA Molecular Genetics and Genomics. 199: 415-420. PMID 2412090 DOI: 10.1007/Bf00330752 |
0.362 |
|
| 1984 |
Moore C, Griffith J. Mapping restriction sites on large DNAs by electron microscopy. Gene. 24: 191-8. PMID 6315536 DOI: 10.1016/0378-1119(83)90079-3 |
0.524 |
|
| 1982 |
Griffith JD, Hester S, El Saidy S. A duplex structure involving two non-complementary DNA strands can be formed and stabilized by M13 phage proteins. Journal of Molecular Biology. 157: 321-30. PMID 7108962 DOI: 10.1016/0022-2836(82)90237-6 |
0.619 |
|
| 1982 |
Dunn K, Chrysogelos S, Griffith J. Electron microscopic visualization of recA-DNA filaments: evidence for a cyclic extension of duplex DNA. Cell. 28: 757-65. PMID 7046950 DOI: 10.1016/0092-8674(82)90055-1 |
0.568 |
|
| 1982 |
Moore CL, Griffith JD, Shaw JE. Filamentous structures associated with Epstein-Barr virus-infected cells Journal of Virology. 43: 305-313. PMID 6287004 DOI: 10.1128/jvi.43.1.305-313.1982 |
0.335 |
|
| 1981 |
Manning M, Chrysogelos S, Griffith J. Mechanism of coliphage M13 contraction: intermediate structures trapped at low temperatures. Journal of Virology. 40: 912-919. PMID 7321105 DOI: 10.1128/Jvi.40.3.912-919.1981 |
0.326 |
|
| 1981 |
Griffith J, Manning M, Dunn K. Filamentous bacteriophage contract into hollow spherical particles upon exposure to a chloroform-water interface. Cell. 23: 747-53. PMID 7226228 DOI: 10.1016/0092-8674(81)90438-4 |
0.507 |
|
| 1981 |
Dunn K, Griffith JD. The presence of RNA in a double helix inhibits its interaction with histone protein. Nucleic Acids Research. 8: 555-66. PMID 6160477 DOI: 10.1093/Nar/8.3.555 |
0.51 |
|
| 1981 |
Brack C, Griffith JD. DNA electron microscopy - part i Critical Reviews in Biochemistry and Molecular Biology. 10: 142-169. DOI: 10.3109/10409238109114552 |
0.502 |
|
| 1978 |
Griffith JD. DNA structure: evidence from electron microscopy. Science (New York, N.Y.). 201: 525-7. PMID 663672 DOI: 10.1126/Science.663672 |
0.56 |
|
| 1978 |
Griffith JD. Ligation of nicked SV40 dna in a polyethylene glycol-condensed state as a test for net coiling Biopolymers - Peptide Science Section. 17: 237-241. PMID 203350 DOI: 10.1002/Bip.1978.360170119 |
0.473 |
|
| 1977 |
Eisenberg S, Griffith J, Kornberg A. ϕX174 cistron A protein is a multifunctional enzyme in DNA replication Proceedings of the National Academy of Sciences of the United States of America. 74: 3198-3202. PMID 269383 DOI: 10.1073/Pnas.74.8.3198 |
0.731 |
|
| 1977 |
Christiansen G, Griffith J. Salt and divalent cations affect the flexible nature of the natural beaded chromatin structure. Nucleic Acids Research. 4: 1837-51. PMID 197496 DOI: 10.1093/Nar/4.6.1837 |
0.392 |
|
| 1977 |
Christiansen G, Landers T, Griffith J, Berg P. Characterization of components released by alkali disruption of simian virus 40. Journal of Virology. 21: 1079-84. PMID 15134 DOI: 10.1128/Jvi.21.3.1079-1084.1977 |
0.621 |
|
| 1976 |
Griffith JD. Visualization of prokaryotic DNA in a regularly condensed chromatin-like fiber. Proceedings of the National Academy of Sciences of the United States of America. 73: 563-7. PMID 1108025 DOI: 10.1073/Pnas.73.2.563 |
0.412 |
|
| 1975 |
Griffith J, Dieckmann M, Berg P. Electron microscope localization of a protein bound near the origin of simian virus 40 DNA replication. Journal of Virology. 15: 167-72. PMID 163341 DOI: 10.1128/Jvi.15.1.167-172.1975 |
0.689 |
|
| 1974 |
Griffith J, Kornberg A. Mini M13 bacteriophage: Circular fragments of M13 DNA are replicated and packaged during normal infections Virology. 59: 139-152. PMID 4826202 DOI: 10.1016/0042-6822(74)90211-6 |
0.615 |
|
| 1974 |
Pratt D, Laws P, Griffith J. Complex of bacteriophage M13 single-stranded DNA and gene 5 protein. Journal of Molecular Biology. 82: 425-439. PMID 4594145 DOI: 10.1016/0022-2836(74)90239-3 |
0.534 |
|
| 1974 |
Griffith JD. Electron microscopic visualization of DNA in association with cellular components. Methods in Cell Biology. 7: 129-46. PMID 4592520 DOI: 10.1016/S0091-679X(08)61774-4 |
0.509 |
|
| 1973 |
Griffith JD, Bonner JF. Chromatin-like aggregates of uranyl acetate. Nature: New Biology. 244: 80-1. PMID 4124652 DOI: 10.1038/Newbio244080A0 |
0.506 |
|
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