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James S. Schwaber - Publications

Affiliations: 
Department of Chemical Engineering University of Delaware, Newark, DE, United States 
Area:
Chemical Engineering, Molecular Biology, Neurobiology Biology
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 O'Sullivan SJ, McIntosh-Clarke D, Park J, Vadigepalli R, Schwaber JS. Single Cell Scale Neuronal and Glial Gene Expression and Putative Cell Phenotypes and Networks in the Nucleus Tractus Solitarius in an Alcohol Withdrawal Time Series. Frontiers in Systems Neuroscience. 15: 739790. PMID 34867221 DOI: 10.3389/fnsys.2021.739790  0.301
2020 Park JH, Gorky J, Ogunnaike B, Vadigepalli R, Schwaber JS. Investigating the Effects of Brainstem Neuronal Adaptation on Cardiovascular Homeostasis. Frontiers in Neuroscience. 14: 470. PMID 32508573 DOI: 10.3389/Fnins.2020.00470  0.386
2020 Staehle MM, O'Sullivan S, Vadigepalli R, Kernan KF, Gonye GE, Ogunnaike BA, Schwaber JS. Diurnal Patterns of Gene Expression in the Dorsal Vagal Complex and the Central Nucleus of the Amygdala - Non-rhythm-generating Brain Regions. Frontiers in Neuroscience. 14: 375. PMID 32477043 DOI: 10.3389/Fnins.2020.00375  0.339
2020 Achanta S, Gorky J, Leung C, Moss A, Robbins S, Eisenman L, Chen J, Tappan S, Heal M, Farahani N, Huffman T, England S, Cheng ZJ, Vadigepalli R, Schwaber JS. A Comprehensive Integrated Anatomical and Molecular Atlas of Rat Intrinsic Cardiac Nervous System. Iscience. 101140. PMID 32460006 DOI: 10.1016/J.Isci.2020.101140  0.303
2020 O'Sullivan SJ, Reyes BAS, Vadigepalli R, Van Bockstaele EJ, Schwaber JS. Combining Laser Capture Microdissection and Microfluidic qPCR to Analyze Transcriptional Profiles of Single Cells: A Systems Biology Approach to Opioid Dependence. Journal of Visualized Experiments : Jove. PMID 32202523 DOI: 10.3791/60612  0.333
2017 Anderson WD, DeCicco D, Schwaber JS, Vadigepalli R. A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation. Plos Computational Biology. 13: e1005627. PMID 28732007 DOI: 10.1371/Journal.Pcbi.1005627  0.38
2017 Lytton WW, Arle J, Bobashev G, Ji S, Klassen TL, Marmarelis VZ, Schwaber J, Sherif MA, Sanger TD. Multiscale modeling in the clinic: diseases of the brain and nervous system. Brain Informatics. PMID 28488252 DOI: 10.1007/S40708-017-0067-5  0.312
2016 Park J, Zhu H, O'Sullivan S, Ogunnaike BA, Weaver DR, Schwaber JS, Vadigepalli R. Single-Cell Transcriptional Analysis Reveals Novel Neuronal Phenotypes and Interaction Networks Involved in the Central Circadian Clock. Frontiers in Neuroscience. 10: 481. PMID 27826225 DOI: 10.3389/Fnins.2016.00481  0.395
2016 Hendy EB, Marvar PJ, Cruise T, Walas D, DeCicco D, Vadigepalli R, Schwaber JS, Waki H, Murphy D, Paton JF. Systemic leukotriene b4 receptor antagonism lowers arterial blood pressure and improves autonomic function in the spontaneously hypertensive rat. The Journal of Physiology. PMID 27230966 DOI: 10.1113/Jp272065  0.312
2015 Makadia HK, Schwaber JS, Vadigepalli R. Intracellular Information Processing through Encoding and Decoding of Dynamic Signaling Features. Plos Computational Biology. 11: e1004563. PMID 26491963 DOI: 10.1371/Journal.Pcbi.1004563  0.337
2015 DeCicco D, Zhu H, Brureau A, Schwaber JS, Vadigepalli R. MicroRNA network changes in the brain stem underlie the development of hypertension. Physiological Genomics. 47: 388-99. PMID 26126791 DOI: 10.1152/Physiolgenomics.00047.2015  0.359
2015 Park J, Ogunnaike B, Schwaber J, Vadigepalli R. Identifying functional gene regulatory network phenotypes underlying single cell transcriptional variability. Progress in Biophysics and Molecular Biology. 117: 87-98. PMID 25433230 DOI: 10.1016/J.Pbiomolbio.2014.11.004  0.425
2014 Park J, Brureau A, Kernan K, Starks A, Gulati S, Ogunnaike B, Schwaber J, Vadigepalli R. Inputs drive cell phenotype variability. Genome Research. 24: 930-41. PMID 24671852 DOI: 10.1101/Gr.161802.113  0.357
2013 Schwaber JS, Vadigepalli R. Dynamic Transcriptomics: Transcriptomic Discovery of a Biological Multiple-Input Multiple-Output Heart Control Mechanism Ifac Proceedings Volumes. 46: 1-5. DOI: 10.3182/20131216-3-In-2044.00070  0.344
2012 Zhu H, Vadigepalli R, Rafferty R, Gonye GE, Weaver DR, Schwaber JS. Integrative gene regulatory network analysis reveals light-induced regional gene expression phase shift programs in the mouse suprachiasmatic nucleus. Plos One. 7: e37833. PMID 22662235 DOI: 10.1371/Journal.Pone.0037833  0.357
2012 Morris KF, Schwaber JS. The neuroscience-systems biology disconnect: towards the NeuroPhysiome. Experimental Physiology. 97: 452-4. PMID 22525662 DOI: 10.1113/Expphysiol.2011.058297  0.384
2012 Freeman K, Staehle MM, Gümüş ZH, Vadigepalli R, Gonye GE, Nichols CN, Ogunnaike BA, Hoek JB, Schwaber JS. Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance. Alcoholism, Clinical and Experimental Research. 36: 1688-700. PMID 22486438 DOI: 10.1111/J.1530-0277.2012.01791.X  0.333
2012 Vadigepalli R, Gonye GE, Paton JF, Schwaber JS. Adaptive transcriptional dynamics of A2 neurons and central cardiovascular control pathways. Experimental Physiology. 97: 462-8. PMID 22002872 DOI: 10.1113/Expphysiol.2011.059790  0.404
2010 Miller GM, Ogunnaike BA, Schwaber JS, Vadigepalli R. Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network. Bmc Systems Biology. 4: 171. PMID 21167049 DOI: 10.1186/1752-0509-4-171  0.408
2008 Hao H, Liu H, Gonye G, Schwaber JS. A fast carrier chromatin immunoprecipitation method applicable to microdissected tissue samples. Journal of Neuroscience Methods. 172: 38-42. PMID 18502516 DOI: 10.1016/J.Jneumeth.2008.04.002  0.355
2008 Khan RL, Vadigepalli R, McDonald MK, Rogers RF, Gao GR, Schwaber JS. Dynamic transcriptomic response to acute hypertension in the nucleus tractus solitarius. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 295: R15-27. PMID 18434436 DOI: 10.1152/Ajpregu.00152.2008  0.429
2008 Vadigepalli R, Fey D, Schwaber JS. Multi-scale modeling of angiotensin II induced neuronal regulatory mechanisms in the brain Bmc Neuroscience. 9. DOI: 10.1186/1471-2202-9-S1-P47  0.307
2008 Gonye GE, Vadigepalli R, Hao H, Schwaber JS. Transcriptional regulation network analysis of the hypertension-perturbed nucleus tractus solitarius Bmc Neuroscience. 9. DOI: 10.1186/1471-2202-9-S1-P31  0.343
2008 Schwaber J, Vadigepalli R, Khan R, Rogers R, Macdonald M. Systems biology of homeodynamics: Neuronal adaptive compensation Comparative Biochemistry and Physiology Part a: Molecular & Integrative Physiology. 150: S44. DOI: 10.1016/J.Cbpa.2008.04.016  0.313
2007 Gonye GE, Chakravarthula P, Schwaber JS, Vadigepalli R. From promoter analysis to transcriptional regulatory network prediction using PAINT. Methods in Molecular Biology (Clifton, N.J.). 408: 49-68. PMID 18314577 DOI: 10.1007/978-1-59745-547-3_4  0.345
2007 Vadigepalli R, Khan RL, McDonald MK, Schwaber JS. Analysis of transcriptional regulation underlying central neural control mechanisms in acute hypertension The Faseb Journal. 21. DOI: 10.1096/Fasebj.21.5.A465-A  0.325
2006 Vadigepalli R, Hao H, Miller GM, Liu H, Schwaber JS. Epidermal growth factor receptor-induced circadian-time-dependent gene regulation in suprachiasmatic nucleus. Neuroreport. 17: 1437-41. PMID 16932154 DOI: 10.1097/01.Wnr.0000227989.15422.71  0.319
2006 Zak DE, Hao H, Vadigepalli R, Miller GM, Ogunnaike BA, Schwaber JS. Systems analysis of circadian time-dependent neuronal epidermal growth factor receptor signaling. Genome Biology. 7: R48. PMID 16784547 DOI: 10.1186/Gb-2006-7-6-R48  0.357
2006 Hao H, Zak DE, Sauter T, Schwaber J, Ogunnaike BA. Modeling the VPAC2-activated cAMP/PKA signaling pathway: from receptor to circadian clock gene induction. Biophysical Journal. 90: 1560-71. PMID 16339878 DOI: 10.1529/Biophysj.105.065250  0.355
2005 Covarrubias MY, Khan RL, Vadigepalli R, Hoek JB, Schwaber JS. Chronic alcohol exposure alters transcription broadly in a key integrative brain nucleus for homeostasis: the nucleus tractus solitarius. Physiological Genomics. 24: 45-58. PMID 16189278 DOI: 10.1152/Physiolgenomics.00184.2005  0.354
2005 Zak DE, Vadigepalli R, Gonye GE, Doyle FJ, Schwaber JS, Ogunnaike BA. Unconventional systems analysis problems in molecular biology: A case study in gene regulatory network modeling Computers and Chemical Engineering. 29: 547-563. DOI: 10.1016/J.Compchemeng.2004.08.016  0.307
2003 Zak DE, Pearson RK, Vadigepalli R, Gonye GE, Schwaber JS, Doyle FJ. Continuous-time identification of gene expression models. Omics : a Journal of Integrative Biology. 7: 373-86. PMID 14683610 DOI: 10.1089/153623103322637689  0.364
2003 Zak DE, Gonye GE, Schwaber JS, Doyle FJ. Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network. Genome Research. 13: 2396-405. PMID 14597654 DOI: 10.1101/Gr.1198103  0.362
2003 Vadigepalli R, Chakravarthula P, Zak DE, Schwaber JS, Gonye GE. PAINT: a promoter analysis and interaction network generation tool for gene regulatory network identification. Omics : a Journal of Integrative Biology. 7: 235-52. PMID 14583114 DOI: 10.1089/153623103322452378  0.363
2001 Rybak IA, Paton JF, Schwaber JS. Neurogenesis of the respiratory pattern: insights from computational modeling. Advances in Experimental Medicine and Biology. 499: 165-70. PMID 11729872 DOI: 10.1007/978-1-4615-1375-9_26  0.341
2001 Vadigepalli R, Doyle FJ, Schwaber JS. Analysis and neuronal modeling of the nonlinear characteristics of a local cardiac reflex in the rat. Neural Computation. 13: 2239-71. PMID 11570998 DOI: 10.1162/089976601750541796  0.319
2001 Paton JF, Li YW, Schwaber JS. Response properties of baroreceptive NTS neurons. Annals of the New York Academy of Sciences. 940: 157-68. PMID 11458674 DOI: 10.1111/J.1749-6632.2001.Tb03674.X  0.357
1997 Rybak IA, Paton JF, Schwaber JS. Modeling neural mechanisms for genesis of respiratory rhythm and pattern. III. Comparison of model performances during afferent nerve stimulation. Journal of Neurophysiology. 77: 2027-39. PMID 9114252 DOI: 10.1152/Jn.1997.77.4.2027  0.302
1997 Rybak IA, Paton JF, Schwaber JS. Modeling neural mechanisms for genesis of respiratory rhythm and pattern. II. Network models of the central respiratory pattern generator. Journal of Neurophysiology. 77: 2007-26. PMID 9114251 DOI: 10.1152/Jn.1997.77.4.2007  0.356
1997 Rybak IA, Paton JF, Schwaber JS. Modeling neural mechanisms for genesis of respiratory rhythm and pattern. I. Models of respiratory neurons. Journal of Neurophysiology. 77: 1994-2006. PMID 9114250 DOI: 10.1152/Jn.1997.77.4.1994  0.342
1994 Henson MA, Ogunnaike BA, Schwaber JS, Doyle FJ. The baroreceptor reflex: A biological control system with applications in chemical process control Industrial and Engineering Chemistry Research. 33: 2453-2466. DOI: 10.1021/Ie00034A030  0.304
1993 Rogers RF, Paton JF, Schwaber JS. NTS neuronal responses to arterial pressure and pressure changes in the rat. The American Journal of Physiology. 265: R1355-68. PMID 8285278 DOI: 10.1152/Ajpregu.1993.265.6.R1355  0.336
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