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Rebekah L. Gundry, Ph.D. - Publications

Affiliations: 
2006 Johns Hopkins University, Baltimore, MD 
Area:
Analytical Chemistry, Biochemistry
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54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Luecke LB, Waas M, Littrell J, Wojtkiewicz M, Castro C, Burkovetskaya M, Schuette EN, Buchberger AR, Churko JM, Chalise U, Waknitz M, Konfrst S, Teuben R, Morrissette-McAlmon J, Mahr C, ... ... Gundry RL, et al. Surfaceome mapping of primary human heart cells with CellSurfer uncovers cardiomyocyte surface protein LSMEM2 and proteome dynamics in failing hearts. Nature Cardiovascular Research. 2: 76-95. PMID 36950336 DOI: 10.1038/s44161-022-00200-y  0.77
2021 Kelly MI, Albahrani M, Castro C, Poon E, Yan B, Littrell J, Waas M, Boheler KR, Gundry RL. Correction to: Importance of evaluating protein glycosylation in pluripotent stem cell‑derived cardiomyocytes for research and clinical applications. Pflugers Archiv : European Journal of Physiology. PMID 34075447 DOI: 10.1007/s00424-021-02566-7  0.716
2021 Kelly MI, Albahrani M, Castro C, Poon E, Yan B, Littrell J, Waas M, Boheler KR, Gundry RL. Importance of evaluating protein glycosylation in pluripotent stem cell-derived cardiomyocytes for research and clinical applications. Pflugers Archiv : European Journal of Physiology. PMID 33830329 DOI: 10.1007/s00424-021-02554-x  0.752
2021 Ashwood HE, Ashwood C, Schmidt AP, Gundry RL, Hoffmeister KM, Anani WQ. Characterization and statistical modeling of glycosylation changes in sickle cell disease. Blood Advances. 5: 1463-1473. PMID 33666655 DOI: 10.1182/bloodadvances.2020003376  0.764
2020 Adhikari S, Nice EC, Deutsch EW, Lane L, Omenn GS, Pennington SR, Paik YK, Overall CM, Corrales FJ, Cristea IM, Van Eyk JE, Uhlén M, Lindskog C, Chan DW, Bairoch A, ... ... Gundry RL, et al. A high-stringency blueprint of the human proteome. Nature Communications. 11: 5301. PMID 33067450 DOI: 10.1038/s41467-020-19045-9  0.456
2020 Oldham RAA, Faber ML, Keppel TR, Buchberger AR, Waas M, Hari P, Gundry RL, Medin JA. Discovery and validation of surface -glycoproteins in MM cell lines and patient samples uncovers immunotherapy targets. Journal For Immunotherapy of Cancer. 8. PMID 32771993 DOI: 10.1136/Jitc-2020-000915  0.728
2020 Waas M, Littrell J, Gundry RL. CIRFESS: An interactive resource for querying the set of theoretically detectable peptides for cell surface and extracellular enrichment proteomic studies. Journal of the American Society For Mass Spectrometry. PMID 32212654 DOI: 10.1021/Jasms.0C00021  0.757
2020 Poon EN, Luo XL, Webb SE, Yan B, Zhao R, Wu SCM, Yang Y, Zhang P, Bai H, Shao J, Chan CM, Chan GC, Tsang SY, Gundry RL, Yang HT, et al. The cell surface marker CD36 selectively identifies matured, mitochondria-rich hPSC-cardiomyocytes. Cell Research. PMID 32157205 DOI: 10.1038/S41422-020-0292-Y  0.34
2020 Wu PK, Hong SK, Chen W, Becker AE, Gundry RL, Lin CW, Shao H, Gestwicki JE, Park JI. Mortalin (HSPA9) facilitates -mutant tumor cell survival by suppressing ANT3-mediated mitochondrial membrane permeability. Science Signaling. 13. PMID 32156782 DOI: 10.1126/Scisignal.Aay1478  0.317
2020 Waas M, Snarrenberg ST, Littrell J, Jones Lipinski RA, Hansen PA, Corbett JA, Gundry RL. SurfaceGenie: a web-based application for prioritizing cell-type specific marker candidates. Bioinformatics (Oxford, England). PMID 32053146 DOI: 10.1093/Bioinformatics/Btaa092  0.758
2020 Young JB, Keppel TR, Waas M, Salmon AE, Buchberger AR, Skumatz CMB, Gundry RL, Kassem IS. Quantitative proteomic analysis of aqueous humor after rabbit lensectomy reveals differences in coagulation and immunomodulatory proteins. Molecular Omics. PMID 32031200 DOI: 10.1039/c9mo00169g  0.704
2020 Ashwood C, Waas M, Weerasekera R, Gundry RL. Reference glycan structure libraries of primary human cardiomyocytes and pluripotent stem cell-derived cardiomyocytes reveal cell-type and culture stage-specific glycan phenotypes. Journal of Molecular and Cellular Cardiology. 139: 33-46. PMID 31972267 DOI: 10.1016/J.Yjmcc.2019.12.012  0.772
2019 Waas M, Gundry RL. A call to adopt a 'fit-for-purpose' approach to antibody validation for flow cytometry analyses of stem cell models and beyond. American Journal of Physiology. Heart and Circulatory Physiology. PMID 31559827 DOI: 10.1152/Ajpheart.00347.2019  0.733
2019 Berg Luecke L, Waas M, Gundry RL. Reliable Protocols for Flow Cytometry Analysis of Intracellular Proteins in Pluripotent Stem Cell Derivatives: A Fit-For-Purpose Approach. Current Protocols in Stem Cell Biology. 50: e94. PMID 31479597 DOI: 10.1002/Cpsc.94  0.766
2019 Ashwood C, Pratt B, MacLean BX, Gundry RL, Packer NH. Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping. The Analyst. PMID 31065629 DOI: 10.1039/C9An00486F  0.77
2019 Waas M, Pereckas M, Jones Lipinski RA, Ashwood C, Gundry RL. SP2: Rapid and Automatable Contaminant Removal from Peptide Samples for Proteomic Analyses. Journal of Proteome Research. PMID 30795648 DOI: 10.1021/Acs.Jproteome.8B00916  0.743
2019 Waas M, Weerasekera R, Kropp EM, Romero-Tejeda M, Poon EN, Boheler KR, Burridge PW, Gundry RL. Are These Cardiomyocytes? Protocol Development Reveals Impact of Sample Preparation on the Accuracy of Identifying Cardiomyocytes by Flow Cytometry. Stem Cell Reports. PMID 30686762 DOI: 10.1016/J.Stemcr.2018.12.016  0.753
2019 Berg Luecke L, Buchberger AR, Waas M, Mahr C, Gundry RL. Abstract 246: Applying a Quantitative, Cell Surface Glycoproteomic Approach to Understanding the Role of Human Cardiac Fibroblasts in Advanced Heart Failure Circulation Research. 125. DOI: 10.1161/Res.125.Suppl_1.246  0.729
2018 Moehring F, Waas M, Keppel TR, Rathore D, Cowie AM, Stucky CL, Gundry RL. Quantitative top down mass spectrometry identifies proteoforms differentially released during mechanical stimulation of mouse skin. Journal of Proteome Research. PMID 29925238 DOI: 10.1021/Acs.Jproteome.8B00109  0.71
2018 Fujinaka CM, Waas M, Gundry RL. Mass Spectrometry-Based Identification of Extracellular Domains of Cell Surface N-Glycoproteins: Defining the Accessible Surfaceome for Immunophenotyping Stem Cells and Their Derivatives. Methods in Molecular Biology (Clifton, N.J.). 1722: 57-78. PMID 29264798 DOI: 10.1007/978-1-4939-7553-2_4  0.792
2018 Waas M, Weerasekera R, Kropp EM, Romero M, Poon E, Boheler KR, Burridge PW, Gundry RL. Abstract 346: A Standard Flow Cytometry Protocol for Assessing Human Pluripotent Stem Cell-derived Cardiomyocyte Identity by Troponin Positivity Circulation Research. 123. DOI: 10.1161/Res.123.Suppl_1.346  0.735
2017 Haverland NA, Waas M, Ntai I, Keppel T, Gundry RL, Kelleher NL. Cell Surface Proteomics of N-Linked Glycoproteins for Typing of Human Lymphocytes. Proteomics. PMID 28834292 DOI: 10.1002/Pmic.201700156  0.766
2017 Kropp EM, Broniowska KA, Waas M, Nycz A, Corbett JA, Gundry RL. Cardiomyocyte Differentiation Promotes Cell Survival During Nicotinamide Phosphoribosyltransferase Inhibition Through Increased Maintenance of Cellular Energy Stores. Stem Cells Translational Medicine. PMID 28224719 DOI: 10.1002/Sctm.16-0151  0.739
2017 Boheler KR, Gundry RL. Concise Review: Cell Surface N-Linked Glycoproteins as Potential Stem Cell Markers and Drug Targets. Stem Cells Translational Medicine. 6: 131-138. PMID 28170199 DOI: 10.5966/Sctm.2016-0109  0.512
2017 Haverland NA, Waas M, Ntai I, Keppel T, Gundry RL, Kelleher NL. Front Cover: Cell Surface Proteomics of N-Linked Glycoproteins for Typing of Human Lymphocytes Proteomics. 17: 1770141. DOI: 10.1002/Pmic.201770141  0.746
2016 Mallanna SK, Waas M, Duncan SA, Gundry RL. N-glycoprotein surfaceome of human induced pluripotent stem cell derived hepatic endoderm. Proteomics. PMID 27966262 DOI: 10.1002/Pmic.201600397  0.771
2016 Mallanna SK, Cayo MA, Twaroski K, Gundry RL, Duncan SA. Mapping the Cell-Surface N-Glycoproteome of Human Hepatocytes Reveals Markers for Selecting a Homogeneous Population of iPSC-Derived Hepatocytes. Stem Cell Reports. PMID 27569060 DOI: 10.1016/J.Stemcr.2016.07.016  0.44
2016 Boheler KR, Gundry RL. Concise Review: Cell Surface N-Linked Glycoproteins as Potential Stem Cell Markers and Drug Targets. Stem Cells Translational Medicine. PMID 27471308 DOI: 10.5966/sctm.2016-0109  0.419
2015 Bausch-Fluck D, Hofmann A, Bock T, Frei AP, Cerciello F, Jacobs A, Moest H, Omasits U, Gundry RL, Yoon C, Schiess R, Schmidt A, Mirkowska P, Härtlová A, Van Eyk JE, et al. A mass spectrometric-derived cell surface protein atlas. Plos One. 10: e0121314. PMID 25894527 DOI: 10.1371/Journal.Pone.0121314  0.63
2015 Olson LJ, Jensen DR, Volkman BF, Kim JJ, Peterson FC, Gundry RL, Dahms NM. Bacterial expression of the phosphodiester-binding site of the cation-independent mannose 6-phosphate receptor for crystallographic and NMR studies. Protein Expression and Purification. 111: 91-7. PMID 25863146 DOI: 10.1016/J.Pep.2015.04.002  0.307
2015 Kropp EM, Oleson BJ, Broniowska KA, Bhattacharya S, Chadwick AC, Diers AR, Hu Q, Sahoo D, Hogg N, Boheler KR, Corbett JA, Gundry RL. Inhibition of an NAD⁺ salvage pathway provides efficient and selective toxicity to human pluripotent stem cells. Stem Cells Translational Medicine. 4: 483-93. PMID 25834119 DOI: 10.5966/Sctm.2014-0163  0.404
2015 Kim MS, Horst A, Blinka S, Stamm K, Mahnke D, Schuman J, Gundry R, Tomita-Mitchell A, Lough J. Activin-A and Bmp4 levels modulate cell type specification during CHIR-induced cardiomyogenesis. Plos One. 10: e0118670. PMID 25706534 DOI: 10.1371/Journal.Pone.0118670  0.33
2015 Mahr C, Gundry RL. Hold or fold--proteins in advanced heart failure and myocardial recovery. Proteomics. Clinical Applications. 9: 121-33. PMID 25331159 DOI: 10.1002/Prca.201400100  0.31
2014 Bhattacharya S, Burridge PW, Kropp EM, Chuppa SL, Kwok WM, Wu JC, Boheler KR, Gundry RL. High efficiency differentiation of human pluripotent stem cells to cardiomyocytes and characterization by flow cytometry. Journal of Visualized Experiments : Jove. 52010. PMID 25286293 DOI: 10.3791/52010  0.472
2014 Boheler KR, Bhattacharya S, Kropp EM, Chuppa S, Riordon DR, Bausch-Fluck D, Burridge PW, Wu JC, Wersto RP, Chan GC, Rao S, Wollscheid B, Gundry RL. A human pluripotent stem cell surface N-glycoproteome resource reveals markers, extracellular epitopes, and drug targets. Stem Cell Reports. 3: 185-203. PMID 25068131 DOI: 10.1016/J.Stemcr.2014.05.002  0.508
2014 Kropp EM, Bhattacharya S, Waas M, Chuppa SL, Hadjantonakis AK, Boheler KR, Gundry RL. N-glycoprotein surfaceomes of four developmentally distinct mouse cell types. Proteomics. Clinical Applications. 8: 603-9. PMID 24920426 DOI: 10.1002/Prca.201400021  0.774
2014 Waas M, Bhattacharya S, Chuppa S, Wu X, Jensen DR, Omasits U, Wollscheid B, Volkman BF, Noon KR, Gundry RL. Combine and conquer: surfactants, solvents, and chaotropes for robust mass spectrometry based analyses of membrane proteins. Analytical Chemistry. 86: 1551-9. PMID 24392666 DOI: 10.1021/Ac403185A  0.744
2012 Müller G, Tarasov KV, Gundry RL, Boheler KR. Human ESC/iPSC-based "Omics" and Bioinformatics for Translational Research. Drug Discovery Today. Disease Models. 9: e161-e170. PMID 23682293 DOI: 10.1016/J.Ddmod.2012.02.003  0.455
2012 Gundry RL, Riordon DR, Tarasova Y, Chuppa S, Bhattacharya S, Juhasz O, Wiedemeier O, Milanovich S, Noto FK, Tchernyshyov I, Raginski K, Bausch-Fluck D, Tae HJ, Marshall S, Duncan SA, et al. A cell surfaceome map for immunophenotyping and sorting pluripotent stem cells. Molecular & Cellular Proteomics : McP. 11: 303-16. PMID 22493178 DOI: 10.1074/Mcp.M112.018135  0.632
2011 Boheler KR, Joodi RN, Qiao H, Juhasz O, Urick AL, Chuppa SL, Gundry RL, Wersto RP, Zhou R. Embryonic stem cell-derived cardiomyocyte heterogeneity and the isolation of immature and committed cells for cardiac remodeling and regeneration. Stem Cells International. 2011: 214203. PMID 21912557 DOI: 10.4061/2011/214203  0.412
2011 Gundry RL, Burridge PW, Boheler KR. Pluripotent stem cell heterogeneity and the evolving role of proteomic technologies in stem cell biology. Proteomics. 11: 3947-61. PMID 21834136 DOI: 10.1002/Pmic.201100100  0.474
2010 Gundry RL, Tchernyshyov I, Sheng S, Tarasova Y, Raginski K, Boheler KR, Van Eyk JE. Expanding the mouse embryonic stem cell proteome: combining three proteomic approaches. Proteomics. 10: 2728-32. PMID 20512790 DOI: 10.1002/Pmic.201000039  0.632
2009 Gundry RL, White MY, Murray CI, Kane LA, Fu Q, Stanley BA, Van Eyk JE. Preparation of proteins and peptides for mass spectrometry analysis in a bottom-up proteomics workflow. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit10.25. PMID 19816929 DOI: 10.1002/0471142727.Mb1025S88  0.556
2009 Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B. The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation. Molecular & Cellular Proteomics : McP. 8: 2555-69. PMID 19656770 DOI: 10.1074/Mcp.M900195-Mcp200  0.614
2009 Gundry RL, White MY, Nogee J, Tchernyshyov I, Van Eyk JE. Assessment of albumin removal from an immunoaffinity spin column: critical implications for proteomic examination of the albuminome and albumin-depleted samples. Proteomics. 9: 2021-8. PMID 19294703 DOI: 10.1002/Pmic.200800686  0.524
2008 Gundry RL, Boheler KR, Van Eyk JE, Wollscheid B. A novel role for proteomics in the discovery of cell-surface markers on stem cells: Scratching the surface. Proteomics. Clinical Applications. 2: 892-903. PMID 19526049 DOI: 10.1002/Prca.200780122  0.649
2008 Li W, Malpica-Llanos TM, Gundry R, Cotter RJ, Sacktor N, McArthur J, Nath A. Nitrosative stress with HIV dementia causes decreased L-prostaglandin D synthase activity. Neurology. 70: 1753-62. PMID 18077799 DOI: 10.1212/01.Wnl.0000282761.19578.35  0.491
2008 Gundry RL, Cotter RJ. The Albuminome as a Tool for Biomarker Discovery Clinical Proteomics: From Diagnosis to Therapy. 263-278. DOI: 10.1002/9783527622153.ch18  0.418
2007 Gundry RL, Fu Q, Jelinek CA, Van Eyk JE, Cotter RJ. Investigation of an albumin-enriched fraction of human serum and its albuminome. Proteomics. Clinical Applications. 1: 73-88. PMID 20204147 DOI: 10.1002/Prca.200600276  0.78
2007 Gundry RL, Van Eyk JE. Unraveling the complexity of circulating forms of brain natriuretic peptide. Clinical Chemistry. 53: 1181-2. PMID 17582147 DOI: 10.1373/Clinchem.2007.086611  0.52
2006 Irani DN, Anderson C, Gundry R, Cotter R, Moore S, Kerr DA, McArthur JC, Sacktor N, Pardo CA, Jones M, Calabresi PA, Nath A. Cleavage of cystatin C in the cerebrospinal fluid of patients with multiple sclerosis. Annals of Neurology. 59: 237-47. PMID 16437581 DOI: 10.1002/Ana.20786  0.538
2005 Cotter RJ, Iltchenko S, Wang D, Gundry R. Tandem Time-of-Flight (TOF/TOF) Mass Spectrometry and Proteomics. Journal of the Mass Spectrometry Society of Japan. 53: 7-17. PMID 20717501 DOI: 10.5702/Massspec.53.7  0.509
2005 Gundry RL, Edward R, Kole TP, Sutton C, Cotter RJ. Disposable hydrophobic surface on MALDI targets for enhancing MS and MS/MS data of peptides. Analytical Chemistry. 77: 6609-17. PMID 16223247 DOI: 10.1021/Ac050500G  0.546
2004 Stanley BA, Gundry RL, Cotter RJ, Van Eyk JE. Heart disease, clinical proteomics and mass spectrometry. Disease Markers. 20: 167-78. PMID 15502250 DOI: 10.1155/2004/965261  0.65
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