Yanjie Wei, Ph.D. - Publications

Affiliations: 
2007 Michigan Technological University, USA 
Area:
General Biophysics

11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Zhang H, Bei Z, Xi W, Hao M, Ju Z, Saravanan KM, Zhang H, Guo N, Wei Y. Evaluation of residue-residue contact prediction methods: From retrospective to prospective. Plos Computational Biology. 17: e1009027. PMID 34029314 DOI: 10.1371/journal.pcbi.1009027  0.3
2020 Zhang H, Saravanan KM, Lin J, Liao L, Ng JT, Zhou J, Wei Y. DeepBindPoc: a deep learning method to rank ligand binding pockets using molecular vector representation. Peerj. 8: e8864. PMID 32292649 DOI: 10.7717/Peerj.8864  0.326
2019 Zhang H, Liao L, Saravanan KM, Yin P, Wei Y. DeepBindRG: a deep learning based method for estimating effective protein-ligand affinity. Peerj. 7: e7362. PMID 31380152 DOI: 10.7717/Peerj.7362  0.341
2018 Jing R, Liang Y, Ran Y, Feng S, Wei Y, He L. Ensemble Methods with Voting Protocols Exhibit Superior Performance for Predicting Cancer Clinical Endpoints and Providing More Complete Coverage of Disease-Related Genes. International Journal of Genomics. 2018: 8124950. PMID 29546047 DOI: 10.1155/2018/8124950  0.321
2016 Zhang H, Huang Q, Bei Z, Wei Y, Floudas CA. COMSAT: Residue contact prediction of transmembrane proteins based on support vector machines and mixed integer linear programming. Proteins. PMID 26756402 DOI: 10.1002/Prot.24979  0.569
2016 Wei D, Peng Y, Wei Y, Jiang Q, Fang J. A hybrid method for splice site prediction based on Markov model and codon information International Journal of Data Mining and Bioinformatics. 16: 345-362. DOI: 10.1504/Ijdmb.2016.10003179  0.335
2012 Subramani A, Wei Y, Floudas CA. ASTRO-FOLD 2.0: an Enhanced Framework for Protein Structure Prediction. Aiche Journal. American Institute of Chemical Engineers. 58: 1619-1637. PMID 23049093 DOI: 10.1002/Aic.12669  0.658
2012 Wei Y, Thompson J, Floudas CA. CONCORD: A consensus method for protein secondary structure prediction via mixed integer linear optimization Proceedings of the Royal Society a: Mathematical, Physical and Engineering Sciences. 468: 831-850. DOI: 10.1098/Rspa.2011.0514  0.568
2011 Wei Y, Floudas CA. Enhanced Inter-helical Residue Contact Prediction in Transmembrane Proteins. Chemical Engineering Science. 66: 4356-4369. PMID 21892227 DOI: 10.1016/J.Ces.2011.04.033  0.578
2010 Rajgaria R, Wei Y, Floudas CA. Contact prediction for beta and alpha-beta proteins using integer linear optimization and its impact on the first principles 3D structure prediction method ASTRO-FOLD. Proteins. 78: 1825-46. PMID 20225257 DOI: 10.1002/Prot.22696  0.623
2007 Kar P, Wei Y, Hansmann UH, Höfinger S. Systematic study of the boundary composition in Poisson Boltzmann calculations. Journal of Computational Chemistry. 28: 2538-44. PMID 17503456 DOI: 10.1002/Jcc.20698  0.475
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