Senjie Lin - Publications

Affiliations: 
Marine Sciences University of Connecticut, Storrs, CT, United States 
Area:
Molecular Biology, Microbiology Biology, Ecology Biology, Biochemistry

124 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Zhang H, Nulick KJ, Burris Z, Pierce M, Ma M, Lin S. Dinoflagellate Proton-Pump Rhodopsin Genes in Long Island Sound: Diversity and Spatiotemporal Distribution. Microorganisms. 12. PMID 38543678 DOI: 10.3390/microorganisms12030628  0.307
2021 Sprecher BN, Zhang H, Park G, Lin S. Isolation from a fish kill and transcriptomic characterization of Gyrodinium jinhaense off Long Island Sound. Harmful Algae. 110: 102136. PMID 34887013 DOI: 10.1016/j.hal.2021.102136  0.302
2020 Kuo RC, Zhang H, Stuart JD, Provatas AA, Hannick L, Lin S. Abundant synthesis of long chain polyunsaturated fatty acids in Eutreptiella sp. (Eugelnozoa) revealed by chromatographic and transcriptomic analyses. Journal of Phycology. PMID 33191494 DOI: 10.1111/jpy.13105  0.559
2020 Yang F, Li L, Lin S. Methylation pattern and expression dynamics of methylase and photosystem genes under varied light intensities in Fugacium kawagutii (Symbiodiniaceae). Journal of Phycology. PMID 32920818 DOI: 10.1111/Jpy.13070  0.338
2020 Li T, Chen X, Lin S. Physiological and transcriptomic responses to N-deficiency and ammonium: Nitrate shift in Fugacium kawagutii (Symbiodiniaceae). The Science of the Total Environment. 753: 141906. PMID 32890873 DOI: 10.1016/J.Scitotenv.2020.141906  0.34
2020 Yu L, Li T, Li L, Lin X, Li H, Liu C, Guo C, Lin S. SAGER: a database of Symbiodiniaceae and Algal Genomic Resource. Database : the Journal of Biological Databases and Curation. 2020. PMID 32621601 DOI: 10.1093/Database/Baaa051  0.348
2020 Saad OS, Lin X, Ng TY, Li L, Ang P, Lin S. Genome Size, rDNA Copy, and qPCR Assays for Symbiodiniaceae. Frontiers in Microbiology. 11: 847. PMID 32528423 DOI: 10.3389/Fmicb.2020.00847  0.357
2020 Wang C, Baseler S, Lin S. Glycerol utilization by phytoplankton. Journal of Phycology. PMID 32452560 DOI: 10.1111/Jpy.13031  0.385
2020 Zhang Y, Lin X, Li T, Li H, Lin L, Luo H, Li L, Ji N, Lin S. High throughput sequencing of 18S rRNA and its gene to characterize a Prorocentrum shikokuense (Dinophyceae) bloom. Harmful Algae. 94: 101809. PMID 32414502 DOI: 10.1016/J.Hal.2020.101809  0.441
2020 Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, ... ... Lin S, et al. Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods. PMID 32251396 DOI: 10.1038/S41592-020-0796-X  0.35
2020 Ji N, Huang J, Zhang Z, Zhou L, Shen X, Lin S. Identification and expression analysis of meiosis-related genes in the harmful alga Heterosigma akashiwo (Raphidophyceae). Harmful Algae. 92: 101736. PMID 32113592 DOI: 10.1016/J.Hal.2019.101736  0.39
2020 Wu Z, Luo H, Yu L, Lee WH, Li L, Mak YL, Lin S, Lam PKS. Characterizing ciguatoxin (CTX)- and Non-CTX-producing strains of Gambierdiscus balechii using comparative transcriptomics. The Science of the Total Environment. 717: 137184. PMID 32084685 DOI: 10.1016/J.Scitotenv.2020.137184  0.367
2020 Zhang X, Lin S, Liu D. Transcriptomic and physiological responses of Skeletonema costatum to ATP utilization. Environmental Microbiology. PMID 32077205 DOI: 10.1111/1462-2920.14944  0.307
2019 Su Y, Zhang K, Zhou Z, Wang J, Yang X, Tang J, Li H, Lin S. Microplastic exposure represses the growth of endosymbiotic dinoflagellate Cladocopium goreaui in culture through affecting its apoptosis and metabolism. Chemosphere. 244: 125485. PMID 31809929 DOI: 10.1016/J.Chemosphere.2019.125485  0.319
2019 Yu L, Zhang Y, Li M, Wang C, Lin X, Li L, Shi X, Guo C, Lin S. Comparative metatranscriptomic profiling and microRNA sequencing to reveal active metabolic pathways associated with a dinoflagellate bloom. The Science of the Total Environment. 699: 134323. PMID 31522044 DOI: 10.1016/J.Scitotenv.2019.134323  0.41
2019 Qiu D, Huang L, Liu X, Lin S. Flourishing deep-sea AAP bacteria detected by flow cytometric sorting and molecular analysis. Plos One. 14: e0218753. PMID 31216335 DOI: 10.1371/Journal.Pone.0218753  0.32
2019 Zhou Z, Zhao S, Tang J, Liu Z, Wu Y, Wang Y, Lin S. Altered Immune Landscape and Disrupted Coral- Symbiosis in the Scleractinian Coral by Challenge. Frontiers in Physiology. 10: 366. PMID 31001143 DOI: 10.3389/Fphys.2019.00366  0.311
2019 Zhang Y, Lin X, Shi X, Lin L, Luo H, Li L, Lin S. Metatranscriptomic Signatures Associated With Phytoplankton Regime Shift From Diatom Dominance to a Dinoflagellate Bloom. Frontiers in Microbiology. 10: 590. PMID 30967855 DOI: 10.3389/Fmicb.2019.00590  0.39
2019 Zhang C, Lin S. Initial evidence of functional siRNA machinery in dinoflagellates. Harmful Algae. 81: 53-58. PMID 30638498 DOI: 10.1016/J.Hal.2018.11.014  0.398
2018 Shi X, Liu L, Li Y, Xiao Y, Ding G, Lin S, Chen J. Isolation of an algicidal bacterium and its effects against the harmful-algal- bloom dinoflagellate Prorocentrum donghaiense (Dinophyceae). Harmful Algae. 80: 72-79. PMID 30502814 DOI: 10.1016/J.Hal.2018.09.003  0.375
2018 Hou Y, Ji N, Zhang H, Shi X, Han H, Lin S. Genome size-dependent pcna gene copy number in dinoflagellates and molecular evidence of retroposition as a major evolutionary mechanism. Journal of Phycology. PMID 30468510 DOI: 10.1111/Jpy.12815  0.359
2018 Li T, Guo C, Zhang Y, Wang C, Lin X, Lin S. Identification and Expression Analysis of an Atypical Alkaline Phosphatase in . Frontiers in Microbiology. 9: 2156. PMID 30283412 DOI: 10.3389/Fmicb.2018.02156  0.353
2018 Tang J, Ni X, Zhou Z, Wang L, Lin S. Acute microplastic exposure raises stress response and suppresses detoxification and immune capacities in the scleractinian coral Pocillopora damicornis. Environmental Pollution (Barking, Essex : 1987). 243: 66-74. PMID 30172125 DOI: 10.1016/J.Envpol.2018.08.045  0.302
2018 Gómez F, Wang L, Lin S. Morphology and molecular phylogeny of epizoic araphid diatoms on marine zooplankton, including Pseudofalcula hyalina gen. & comb. nov. (Fragilariophyceae, Bacillariophyta). Journal of Phycology. PMID 29908074 DOI: 10.1111/Jpy.12760  0.396
2018 Mo Y, Zhang W, Yang J, Lin Y, Yu Z, Lin S. Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes. The Isme Journal. PMID 29880912 DOI: 10.1038/S41396-018-0153-6  0.309
2018 Shi X, Li L, Lin S. Circadian and irradiance effects on expression of antenna protein genes and pigment contents in dinoflagellate Prorocentrum donghaiense (Dinophycae). Harmful Algae. 75: 27-34. PMID 29778223 DOI: 10.1016/J.Hal.2018.04.002  0.326
2018 Gómez F, Wang L, Lin S. Morphology and Molecular Phylogeny of Peritrich Ciliate Epibionts on Pelagic Diatoms: Vorticella oceanica and Pseudovorticella coscinodisci sp. nov. (Ciliophora, Peritrichia). Protist. 169: 268-279. PMID 29655023 DOI: 10.1016/J.Protis.2018.03.003  0.368
2018 Ji N, Lin L, Li L, Yu L, Zhang Y, Luo H, Li M, Shi X, Wang DZ, Lin S. Metatranscriptome analysis reveals environmental and diel regulation of a Heterosigma akashiwo (Raphidophyceae) bloom. Environmental Microbiology. PMID 29345115 DOI: 10.1111/1462-2920.14045  0.404
2018 Wohlrab S, Falcke JM, Lin S, Zhang H, Neuhaus S, Elferink S, Voss D, Zielinski O, John U. Metatranscriptome Profiling Indicates Size-Dependent Differentiation in Plastic and Conserved Community Traits and Functional Diversification in Dinoflagellate Communities Frontiers in Marine Science. 5. DOI: 10.3389/Fmars.2018.00358  0.307
2018 Augyte S, Lewis L, Lin S, Neefus CD, Yarish C. Speciation in the exposed intertidal zone: the case of Saccharina angustissima comb. nov. & stat. nov. (Laminariales, Phaeophyceae) Phycologia. 57: 100-112. DOI: 10.2216/17-40.1  0.341
2018 Gómez F, Wang L, Lin S. Molecular phylogeny suggests the affinity of the planktonic diatoms Climacodium and Bellerochea (Lithodesmiales, Mediophyceae) Diatom Research. 33: 349-354. DOI: 10.1080/0269249X.2018.1551246  0.361
2018 Pan Y, Zhang W, Lin S. Transcriptomic and microRNAomic profiling reveals molecular mechanisms to cope with silver nanoparticle exposure in the ciliate Euplotes vannus Environmental Science. Nano. 5: 2921-2935. DOI: 10.1039/C8En00924D  0.331
2017 Wang C, Lin X, Li L, Lin L, Lin S. Glyphosate Shapes a Dinoflagellate-Associated Bacterial Community While Supporting Algal Growth as Sole Phosphorus Source. Frontiers in Microbiology. 8: 2530. PMID 29312222 DOI: 10.3389/Fmicb.2017.02530  0.41
2017 Jing X, Lin S, Zhang H, Koerting C, Yu Z. Utilization of urea and expression profiles of related genes in the dinoflagellate Prorocentrum donghaiense. Plos One. 12: e0187837. PMID 29117255 DOI: 10.1371/Journal.Pone.0187837  0.343
2017 Song B, Morse D, Song Y, Fu Y, Lin X, Wang W, Cheng S, Chen W, Liu X, Lin S. Comparative Genomics Reveals Two Major Bouts of Gene Retroposition Coinciding with Crucial Periods of Symbiodinium Evolution. Genome Biology and Evolution. 9: 2037-2047. PMID 28903461 DOI: 10.1093/Gbe/Evx144  0.387
2017 Zhang W, Pan Y, Yang J, Chen H, Holohan B, Vaudrey J, Lin S, McManus GB. The diversity and biogeography of abundant and rare intertidal marine microeukaryotes explained by environment and dispersal limitation. Environmental Microbiology. PMID 28881067 DOI: 10.1111/1462-2920.13916  0.336
2017 Luo H, Lin X, Li L, Lin L, Zhang C, Lin S. Transcriptomic and physiological analyses of the dinoflagellate Karenia mikimotoi reveal non-alkaline phosphatase-based molecular machinery of ATP utilization. Environmental Microbiology. PMID 28856827 DOI: 10.1111/1462-2920.13899  0.328
2017 Zhang C, Luo H, Huang L, Lin S. Molecular mechanism of glucose-6-phosphate utilization in the dinoflagellate Karenia mikimotoi. Harmful Algae. 67: 74-84. PMID 28755722 DOI: 10.1016/J.Hal.2017.06.006  0.308
2017 Brawley SH, Blouin NA, Ficko-Blean E, Wheeler GL, Lohr M, Goodson HV, Jenkins JW, Blaby-Haas CE, Helliwell KE, Chan CX, Marriage TN, Bhattacharya D, Klein AS, Badis Y, Brodie J, ... ... Lin S, et al. Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). Proceedings of the National Academy of Sciences of the United States of America. PMID 28716924 DOI: 10.1073/Pnas.1703088114  0.34
2017 Shi X, Ma M, Lin S. Cell Cycle-Dependent Expression Dynamics of G1/S Specific Cyclin, Cellulose Synthase and Cellulase in the Dinoflagellate Prorocentrum donghaiense. Frontiers in Microbiology. 8: 1118. PMID 28676796 DOI: 10.3389/Fmicb.2017.01118  0.323
2017 Shi X, Lin X, Li L, Li M, Palenik B, Lin S. Transcriptomic and microRNAomic profiling reveals multi-faceted mechanisms to cope with phosphate stress in a dinoflagellate. The Isme Journal. PMID 28548660 DOI: 10.1038/Ismej.2017.81  0.413
2017 Cui Y, Zhang H, Lin S. Enhancement of Non-photochemical Quenching as an Adaptive Strategy under Phosphorus Deprivation in the Dinoflagellate Karlodinium veneficum. Frontiers in Microbiology. 8: 404. PMID 28360892 DOI: 10.3389/Fmicb.2017.00404  0.338
2017 Gómez F, Qiu D, Lin S. The Synonymy of the Toxic Dinoflagellates Prorocentrum mexicanum and P. rhathymum and the Description of P. steidingerae sp. nov. (Prorocentrales, Dinophyceae). The Journal of Eukaryotic Microbiology. PMID 28207967 DOI: 10.1111/Jeu.12403  0.31
2017 Gómez F, Qiu D, Lopes RM, Lin S. Morphological and molecular characterization of the toxic dinoflagellate Ostreopsis cf. ovata (Dinophyta) from Brazil (South Atlantic Ocean) Revista De Biologia Tropical. 65: 1022-1032. DOI: 10.15517/Rbt.V65I3.26263  0.331
2017 Ji N, Li L, Lin L, Lin S. Identification and expression analysis of blue light receptor aureochrome in the harmful alga Heterosigma akashiwo (raphidophyceae) Harmful Algae. 61: 71-79. DOI: 10.1016/J.Hal.2016.11.016  0.318
2016 Johnson MD, Beaudoin DJ, Laza-Martinez A, Dyhrman ST, Fensin E, Lin S, Merculief A, Nagai S, Pompeu M, Setälä O, Stoecker DK. The Genetic Diversity of Mesodinium and Associated Cryptophytes. Frontiers in Microbiology. 7: 2017. PMID 28066344 DOI: 10.3389/Fmicb.2016.02017  0.4
2016 Qiu D, Huang L, Lin S. Cryptophyte farming by symbiotic ciliate host detected in situ. Proceedings of the National Academy of Sciences of the United States of America. 113: 12208-12213. PMID 27791006 DOI: 10.1073/Pnas.1612483113  0.365
2016 Li M, Shi X, Guo C, Lin S. Phosphorus Deficiency Inhibits Cell Division But Not Growth in the Dinoflagellate Amphidinium carterae. Frontiers in Microbiology. 7: 826. PMID 27313570 DOI: 10.3389/Fmicb.2016.00826  0.337
2016 Gómez F, Qiu D, Dodge JD, Lopes RM, Lin S. Morphological and molecular characterization of Ptychodiscus noctiluca revealed the polyphyletic nature of the order Ptychodiscales (Dinophyceae). Journal of Phycology. PMID 27288215 DOI: 10.1111/Jpy.12438  0.34
2016 Wang L, Lin X, Goes JI, Lin S. Phylogenetic Analyses of Three Genes of Pedinomonas noctilucae, the Green Endosymbiont of the Marine Dinoflagellate Noctiluca scintillans, Reveal its Affiliation to the Order Marsupiomonadales (Chlorophyta, Pedinophyceae) under the Reinstated Name Protoeuglena noctilucae. Protist. 167: 205-216. PMID 27033730 DOI: 10.1016/J.Protis.2016.02.005  0.434
2016 Lin S, Litaker RW, Sunda WG. Phosphorus physiological ecology and molecular mechanisms in marine phytoplankton. Journal of Phycology. 52: 10-36. PMID 26987085 DOI: 10.1111/Jpy.12365  0.354
2016 Wang C, Lin X, Li L, Lin S. Differential Growth Responses of Marine Phytoplankton to Herbicide Glyphosate. Plos One. 11: e0151633. PMID 26985828 DOI: 10.1371/Journal.Pone.0151633  0.345
2016 Cui Y, Lin X, Zhang H, Lin L, Lin S. PhnW-PhnX Pathway in Dinoflagellates Not Functional to Utilize Extracellular Phosphonates Frontiers in Marine Science. 2. DOI: 10.3389/Fmars.2015.00120  0.384
2016 Pan Y, Wang L, Zhang W, Liu G, Lin S. Genetic analysis of Noctiluca scintillans populations indicates low latitudinal differentiation in China but high China-America differences Journal of Experimental Marine Biology and Ecology. 477: 31-39. DOI: 10.1016/J.Jembe.2016.01.002  0.312
2015 Yang F, Xu D, Zhuang Y, Yi X, Huang Y, Chen H, Lin S, Campbell DA, Sturm NR, Liu G, Zhang H. Spliced leader RNA trans-splicing discovered in copepods. Scientific Reports. 5: 17411. PMID 26621068 DOI: 10.1038/Srep17411  0.386
2015 Lin S, Cheng S, Song B, Zhong X, Lin X, Li W, Li L, Zhang Y, Zhang H, Ji Z, Cai M, Zhuang Y, Shi X, Lin L, Wang L, et al. The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis. Science (New York, N.Y.). 350: 691-4. PMID 26542574 DOI: 10.1126/Science.Aad0408  0.371
2015 Lin X, Wang L, Shi X, Lin S. Rapidly diverging evolution of an atypical alkaline phosphatase (PhoA(aty)) in marine phytoplankton: insights from dinoflagellate alkaline phosphatases. Frontiers in Microbiology. 6: 868. PMID 26379645 DOI: 10.3389/Fmicb.2015.00868  0.408
2015 Yuan J, Li M, Lin S. An Improved DNA Extraction Method for Efficient and Quantitative Recovery of Phytoplankton Diversity in Natural Assemblages. Plos One. 10: e0133060. PMID 26218575 DOI: 10.1371/Journal.Pone.0133060  0.317
2015 Ji N, Li L, Lin L, Lin S. Screening for Suitable Reference Genes for Quantitative Real-Time PCR in Heterosigma akashiwo (Raphidophyceae). Plos One. 10: e0132183. PMID 26133173 DOI: 10.1371/Journal.Pone.0132183  0.362
2015 Shi X, Li L, Guo C, Lin X, Li M, Lin S. Rhodopsin gene expression regulated by the light dark cycle, light spectrum and light intensity in the dinoflagellate Prorocentrum. Frontiers in Microbiology. 6: 555. PMID 26082770 DOI: 10.3389/Fmicb.2015.00555  0.364
2015 Gómez F, Qiu D, Lopes RM, Lin S. Fukuyoa paulensis gen. et sp. nov., a new genus for the globular species of the dinoflagellate Gambierdiscus (Dinophyceae). Plos One. 10: e0119676. PMID 25831082 DOI: 10.1371/Journal.Pone.0119676  0.35
2015 Hu S, Guo Z, Li T, Xu C, Huang H, Liu S, Lin S. Molecular analysis of in situ diets of coral reef copepods: evidence of terrestrial plant detritus as a food source in Sanya Bay, China Journal of Plankton Research. 37: 363-371. DOI: 10.1093/Plankt/Fbv014  0.313
2015 Li M, Li L, Shi X, Lin L, Lin S. Effects of phosphorus deficiency and adenosine 5'-triphosphate (ATP) on growth and cell cycle of the dinoflagellate Prorocentrum donghaiense Harmful Algae. 47: 35-41. DOI: 10.1016/J.Hal.2015.05.013  0.317
2015 Zhuang Y, Zhang H, Hannick L, Lin S. Metatranscriptome profiling reveals versatile N-nutrient utilization, CO2 limitation, oxidative stress, and active toxin production in an Alexandrium fundyense bloom Harmful Algae. 42: 60-70. DOI: 10.1016/J.Hal.2014.12.006  0.404
2014 Wang L, Zhuang Y, Zhang H, Lin X, Lin S. DNA barcoding species in Alexandrium tamarense complex using ITS and proposing designation of five species. Harmful Algae. 31: 100-113. PMID 28040099 DOI: 10.1016/J.Hal.2013.10.013  0.336
2014 Guo Z, Zhang H, Lin S. Light-promoted rhodopsin expression and starvation survival in the marine dinoflagellate Oxyrrhis marina. Plos One. 9: e114941. PMID 25506945 DOI: 10.1371/Journal.Pone.0114941  0.374
2014 Hu S, Guo Z, Li T, Carpenter EJ, Liu S, Lin S. Detecting in situ copepod diet diversity using molecular technique: development of a copepod/symbiotic ciliate-excluding eukaryote-inclusive PCR protocol. Plos One. 9: e103528. PMID 25058323 DOI: 10.1371/Journal.Pone.0103528  0.337
2014 Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, ... ... Lin S, et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. Plos Biology. 12: e1001889. PMID 24959919 DOI: 10.1371/Journal.Pbio.1001889  0.345
2014 Mungpakdee S, Shinzato C, Takeuchi T, Kawashima T, Koyanagi R, Hisata K, Tanaka M, Goto H, Fujie M, Lin S, Satoh N, Shoguchi E. Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome. Genome Biology and Evolution. 6: 1408-22. PMID 24881086 DOI: 10.1093/Gbe/Evu109  0.385
2014 Zhang C, Lin S, Huang L, Lu W, Li M, Liu S. Suppression subtraction hybridization analysis revealed regulation of some cell cycle and toxin genes in Alexandrium catenella by phosphate limitation Harmful Algae. 39: 26-39. DOI: 10.1016/J.Hal.2014.06.005  0.4
2013 Guo Z, Zhang H, Liu S, Lin S. Biology of the Marine Heterotrophic Dinoflagellate Oxyrrhis marina: Current Status and Future Directions. Microorganisms. 1: 33-57. PMID 27694763 DOI: 10.3390/microorganisms1010033  0.304
2013 Zhuang Y, Zhang H, Lin S. Polyadenylation of 18S rRNA in algae(1). Journal of Phycology. 49: 570-579. PMID 27007045 DOI: 10.1111/Jpy.12068  0.343
2013 Qiu D, Huang L, Liu S, Zhang H, Lin S. Apical groove type and molecular phylogeny suggests reclassification of Cochlodinium geminatum as Polykrikos geminatum. Plos One. 8: e71346. PMID 23990946 DOI: 10.1371/Journal.Pone.0071346  0.37
2013 Shi X, Zhang H, Lin S. Tandem repeats, high copy number and remarkable diel expression rhythm of form II RuBisCO in Prorocentrum donghaiense (Dinophyceae). Plos One. 8: e71232. PMID 23976999 DOI: 10.1371/Journal.Pone.0071232  0.404
2013 Zhang H, Zhuang Y, Gill J, Lin S. Proof that dinoflagellate spliced leader (DinoSL) is a useful hook for fishing dinoflagellate transcripts from mixed microbial samples: Symbiodinium kawagutii as a case study. Protist. 164: 510-27. PMID 23773861 DOI: 10.1016/J.Protis.2013.04.002  0.372
2013 Kuo RC, Zhang H, Zhuang Y, Hannick L, Lin S. Transcriptomic study reveals widespread spliced leader trans-splicing, short 5'-UTRs and potential complex carbon fixation mechanisms in the euglenoid Alga Eutreptiella sp. Plos One. 8: e60826. PMID 23585853 DOI: 10.1371/Journal.Pone.0060826  0.647
2013 Kuo RC, Lin S. Ectobiotic and endobiotic bacteria associated with Eutreptiella sp. isolated from Long Island Sound. Protist. 164: 60-74. PMID 23107230 DOI: 10.1016/J.Protis.2012.08.004  0.616
2013 Bergman B, Sandh G, Lin S, Larsson J, Carpenter EJ. Trichodesmium--a widespread marine cyanobacterium with unusual nitrogen fixation properties. Fems Microbiology Reviews. 37: 286-302. PMID 22928644 DOI: 10.1111/J.1574-6976.2012.00352.X  0.329
2013 Zhuang Y, Zhang H, Lin S. Cyclin B gene and its cell cycle-dependent differential expression in the toxic dinoflagellate Alexandrium fundyense Atama Group I/Clade I Harmful Algae. 26: 71-79. DOI: 10.1016/J.Hal.2013.04.002  0.356
2012 Chan CX, Blouin NA, Zhuang Y, Zäuner S, Prochnik SE, Lindquist E, Lin S, Benning C, Lohr M, Yarish C, Gantt E, Grossman AR, Lu S, Müller K, W Stiller J, et al. Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism. Journal of Phycology. 48: 1328-1342. PMID 27009986 DOI: 10.1111/J.1529-8817.2012.01229.X  0.396
2012 Stiller JW, Perry J, Rymarquis LA, Accerbi M, Green PJ, Prochnik S, Lindquist E, Chan CX, Yarish C, Lin S, Zhuang Y, Blouin NA, Brawley SH. MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA)(1). Journal of Phycology. 48: 883-96. PMID 27008999 DOI: 10.1111/J.1529-8817.2012.01138.X  0.392
2012 Guo Z, Liu S, Hu S, Li T, Huang Y, Liu G, Zhang H, Lin S. Prevalent ciliate symbiosis on copepods: high genetic diversity and wide distribution detected using small subunit ribosomal RNA gene. Plos One. 7: e44847. PMID 23024768 DOI: 10.1371/Journal.Pone.0044847  0.39
2012 Lin X, Zhang H, Cui Y, Lin S. High sequence variability, diverse subcellular localizations, and ecological implications of alkaline phosphatase in dinoflagellates and other eukaryotic phytoplankton. Frontiers in Microbiology. 3: 235. PMID 22783243 DOI: 10.3389/Fmicb.2012.00235  0.344
2012 Chan CX, Zäuner S, Wheeler G, Grossman AR, Prochnik SE, Blouin NA, Zhuang Y, Benning C, Berg GM, Yarish C, Eriksen RL, Klein AS, Lin S, Levine I, Brawley SH, et al. Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems. Plant Physiology. 158: 2001-12. PMID 22337920 DOI: 10.1104/Pp.112.193896  0.32
2012 Stefaniak L, Zhang H, Gittenberger A, Smith K, Holsinger K, Lin S, Whitlatch RB. Determining the native region of the putatively invasive ascidian Didemnum vexillum Kott, 2002 Journal of Experimental Marine Biology and Ecology. 422: 64-71. DOI: 10.1016/J.Jembe.2012.04.012  0.363
2012 Lin X, Zhang H, Huang B, Lin S. Alkaline phosphatase gene sequence characteristics and transcriptional regulation by phosphate limitation in Karenia brevis (Dinophyceae) Harmful Algae. 17: 14-24. DOI: 10.1016/J.Hal.2012.02.005  0.375
2012 Miranda LN, Zhuang Y, Zhang H, Lin S. Phylogenetic analysis guided by intragenomic SSU rDNA polymorphism refines classification of “Alexandrium tamarense” species complex Harmful Algae. 16: 35-48. DOI: 10.1016/J.Hal.2012.01.002  0.361
2012 Haska CL, Yarish C, Kraemer G, Blaschik N, Whitlatch R, Zhang H, Lin S. Bait worm packaging as a potential vector of invasive species Biological Invasions. 14: 481-493. DOI: 10.1007/S10530-011-0091-Y  0.341
2011 Lin X, Zhang H, Huang B, Lin S. Alkaline Phosphatase Gene Sequence And Transcriptional Regulation By Phosphate Limitation In Amphidinium Carterae (Dinophyceae)(1). Journal of Phycology. 47: 1110-1120. PMID 27020193 DOI: 10.1111/J.1529-8817.2011.01038.X  0.398
2011 Qiu D, Huang L, Liu S, Lin S. Nuclear, mitochondrial and plastid gene phylogenies of Dinophysis miles (Dinophyceae): evidence of variable types of chloroplasts. Plos One. 6: e29398. PMID 22242118 DOI: 10.1371/Journal.Pone.0029398  0.385
2011 Zhang H, Campbell DA, Sturm NR, Dungan CF, Lin S. Spliced leader RNAs, mitochondrial gene frameshifts and multi-protein phylogeny expand support for the genus Perkinsus as a unique group of alveolates. Plos One. 6: e19933. PMID 21629701 DOI: 10.1371/Journal.Pone.0019933  0.386
2011 Lin S. Genomic understanding of dinoflagellates. Research in Microbiology. 162: 551-69. PMID 21514379 DOI: 10.1016/J.Resmic.2011.04.006  0.355
2011 Zhang H, Dungan CF, Lin S. Introns, alternative splicing, spliced leader trans-splicing and differential expression of pcna and cyclin in Perkinsus marinus. Protist. 162: 154-67. PMID 20650682 DOI: 10.1016/J.Protis.2010.03.003  0.431
2010 Lin S, Zhang H, Zhuang Y, Tran B, Gill J. Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates. Proceedings of the National Academy of Sciences of the United States of America. 107: 20033-8. PMID 21041634 DOI: 10.1073/Pnas.1007246107  0.389
2010 Hou Y, Zhang H, Miranda L, Lin S. Serious overestimation in quantitative PCR by circular (supercoiled) plasmid standard: microalgal pcna as the model gene. Plos One. 5: e9545. PMID 20221433 DOI: 10.1371/Journal.Pone.0009545  0.325
2009 Hou Y, Lin S. Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes. Plos One. 4: e6978. PMID 19750009 DOI: 10.1371/Journal.Pone.0006978  0.357
2009 Zhang H, Campbell DA, Sturm NR, Lin S. Dinoflagellate spliced leader RNA genes display a variety of sequences and genomic arrangements. Molecular Biology and Evolution. 26: 1757-71. PMID 19387009 DOI: 10.1093/Molbev/Msp083  0.351
2009 Zhang H, Lin S. Retrieval of missing spliced leader in dinoflagellates. Plos One. 4: e4129. PMID 19122814 DOI: 10.1371/Journal.Pone.0004129  0.379
2009 Lin S, Zhang H, Hou Y, Zhuang Y, Miranda L. High-level diversity of dinoflagellates in the natural environment, revealed by assessment of mitochondrial cox1 and cob genes for dinoflagellate DNA barcoding. Applied and Environmental Microbiology. 75: 1279-90. PMID 19114529 DOI: 10.1128/Aem.01578-08  0.37
2009 Lin S, Sandh G, Zhang H, Cheng J, Perkins K, Carpenter EJ, Bergman B. Two flavodoxin genes in Trichodesmium (Oscillatoriales, Cyanophyceae): Remarkable sequence divergence and possible functional diversification Journal of Experimental Marine Biology and Ecology. 371: 93-101. DOI: 10.1016/J.Jembe.2009.01.010  0.369
2008 Zhang H, Lin S. mRNA EDITING AND SPLICED-LEADER RNA TRANS-SPLICING GROUPS OXYRRHIS, NOCTILUCA, HETEROCAPSA, AND AMPHIDINIUM AS BASAL LINEAGES OF DINOFLAGELLATES(1). Journal of Phycology. 44: 703-11. PMID 27041428 DOI: 10.1111/J.1529-8817.2008.00521.X  0.346
2008 Zhang H, Bhattacharya D, Maranda L, Lin S. Mitochondrial cob and cox1 genes and editing of the corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with special reference to the phylogenetic position of the genus Dinophysis. Applied and Environmental Microbiology. 74: 1546-54. PMID 18165361 DOI: 10.1128/Aem.02103-07  0.388
2008 Zhang H, Litaker W, Vandersea MW, Tester P, Lin S. Geographic distribution of Karlodinium veneficum in the US east coast as detected by ITS-ferredoxin real-time PCR assay Journal of Plankton Research. 30: 905-922. DOI: 10.1093/Plankt/Fbn047  0.336
2007 Zhang H, Bhattacharya D, Lin S. A three-gene dinoflagellate phylogeny suggests monophyly of prorocentrales and a basal position for amphidinium and heterocapsa. Journal of Molecular Evolution. 65: 463-74. PMID 17896067 DOI: 10.1007/S00239-007-9038-4  0.382
2007 Zhang H, Hou Y, Miranda L, Campbell DA, Sturm NR, Gaasterland T, Lin S. Spliced leader RNA trans-splicing in dinoflagellates. Proceedings of the National Academy of Sciences of the United States of America. 104: 4618-23. PMID 17360573 DOI: 10.1073/Pnas.0700258104  0.321
2006 Lin S, Zhang H, Hou Y, Miranda L, Bhattacharya D. Development of a dinoflagellate-oriented PCR primer set leads to detection of picoplanktonic dinoflagellates from Long Island Sound. Applied and Environmental Microbiology. 72: 5626-30. PMID 16885319 DOI: 10.1128/Aem.00586-06  0.356
2006 Zhang H, Hou Y, Lin S. Isolation and characterization of proliferating cell nuclear antigen from the dinoflagellate Pfiesteria piscicida. The Journal of Eukaryotic Microbiology. 53: 142-50. PMID 16579817 DOI: 10.1111/J.1550-7408.2005.00085.X  0.409
2006 Lin S, Zhang H, Jiao N. Potential Utility Of Mitochondrial Cytochrome B And Its Mrna Editing In Resolving Closely Related Dinoflagellates: A Case Study Of Prorocentrum (Dinophyceae)1 Journal of Phycology. 42: 646-654. DOI: 10.1111/J.1529-8817.2006.00229.X  0.361
2006 Lin S, Zhang H, Dubois A. Low abundance distribution of Pfiesteria piscicida in Pacific and Western Atlantic as detected by mtDNA-18S rDNA real-time polymerase chain reaction Journal of Plankton Research. 28: 667-681. DOI: 10.1093/Plankt/Fbi150  0.328
2005 Zhang H, Lin S. Mitochondrial cytochrome b mRNA editing in dinoflagellates: possible ecological and evolutionary associations? The Journal of Eukaryotic Microbiology. 52: 538-45. PMID 16313447 DOI: 10.1111/J.1550-7408.2005.00060.X  0.358
2005 Zhang H, Lin S. Development of a cob-18S rRNA gene real-time PCR assay for quantifying Pfiesteria shumwayae in the natural environment. Applied and Environmental Microbiology. 71: 7053-63. PMID 16269741 DOI: 10.1128/Aem.71.11.7053-7063.2005  0.399
2005 MCMANUS G, ZHANG H, LIN S, KATZ L, PIROG KA. In the land of the blind, one-eye is king: ecology of the mixotrophic ciliates Strombidium oculatum and Strombidium stylifer The Journal of Eukaryotic Microbiology. 52: 7S-27S. DOI: 10.1111/J.1550-7408.2005.05202003_1_59.X  0.305
2005 Zhang H, Bhattacharya D, Lin S. PHYLOGENY OF DINOFLAGELLATES BASED ON MITOCHONDRIAL CYTOCHROME B AND NUCLEAR SMALL SUBUNIT RDNA SEQUENCE COMPARISONS1 Journal of Phycology. 41: 411-420. DOI: 10.1111/J.1529-8817.2005.04168.X  0.334
2004 McManus GB, Zhang H, Lin S. Marine planktonic ciliates that prey on macroalgae and enslave their chloroplasts Limnology and Oceanography. 49: 308-313. DOI: 10.4319/Lo.2004.49.1.0308  0.332
2004 Lin S, Mulholland MR, Zhang H, Feinstein TN, Jochem FJ, Carpenter EJ. Intense grazing and prey-dependent growth of Pfiesteria piscicida (Dinophyceae) Journal of Phycology. 40: 1062-1073. DOI: 10.1111/J.1529-8817.2004.03217.X  0.324
2003 Lin S, Zhang H. Mitogen-activated protein kinase in Pfiesteria piscicida and its growth rate-related expression. Applied and Environmental Microbiology. 69: 343-9. PMID 12514014 DOI: 10.1128/Aem.69.1.343-349.2003  0.364
2003 Zhang H, Lin S. 184 Expressed Gene Arrays in Three Marine Dinoflagellates with Contrasting Trophic Modes Analyzed Via a Small‐Scale Est Sequencing Journal of Phycology. 39: 63-63. DOI: 10.1111/J.0022-3646.2003.03906002_184.X  0.432
2003 Zhang H, Lin S. Complex Gene Structure Of The Form Ii Rubisco In The Dinoflagellate Prorocentrum Minimum (Dinophyceae) 1 Journal of Phycology. 39: 1160-1171. DOI: 10.1111/J.0022-3646.2003.03-055.X  0.346
2003 Lin S, Feinstein TN, Zhang H, Carpenter EJ. Development of an immunofluorescence technique for detecting Pfiesteria piscicida Harmful Algae. 2: 223-231. DOI: 10.1016/S1568-9883(03)00043-X  0.321
2002 Lin S, Zhang H, Spencer DF, Norman JE, Gray MW. Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates. Journal of Molecular Biology. 320: 727-39. PMID 12095251 DOI: 10.1016/S0022-2836(02)00468-0  0.352
2002 Zhang H, Lin S. Detection and quantification of Pfiesteria piscicida by using the mitochondrial cytochrome b gene. Applied and Environmental Microbiology. 68: 989-94. PMID 11823251 DOI: 10.1128/Aem.68.2.989-994.2002  0.355
2002 Lin S, Corstjens PLAM. Molecular Cloning And Expression Of The Proliferating Cell Nuclear Antigen Gene From The Coccolithophorid Pleurochrysis Carterae (Haptophyceae)1 Journal of Phycology. 38: 164-173. DOI: 10.1046/J.1529-8817.2002.01096.X  0.394
2000 Carpenter EJ, Lin S, Capone DG. Bacterial activity in South Pole snow Applied and Environmental Microbiology. 66: 4514-4517. PMID 11010907 DOI: 10.1128/Aem.66.10.4514-4517.2000  0.313
2000 Lin S, Magaletti E, Carpenter EJ. Molecular cloning and antiserum development of cyclin box in the brown tide alga Aureococcus anophagefferens Marine Biotechnology. 2: 577-586. DOI: 10.1007/S101260000044  0.37
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