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Jeffrey N. Agar - Publications

Affiliations: 
Chemistry Brandeis University, Waltham, MA, United States 
 Northeastern University, Boston, MA, United States 
Area:
Analytical Chemistry, General Biophysics, Biochemistry
Website:
http://www.northeastern.edu/cos/faculty/jeffrey-agar/
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Srzentić K, Fornelli L, Tsybin YO, Loo JA, Seckler H, Agar JN, Anderson LC, Bai DL, Beck A, Brodbelt JS, van der Burgt YEM, Chamot-Rooke J, Chatterjee S, Chen Y, Clarke DJ, et al. Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 32812765 DOI: 10.1021/Jasms.0C00036  0.358
2019 Smith LM, Thomas PM, Shortreed MR, Schaffer LV, Fellers RT, LeDuc RD, Tucholski T, Ge Y, Agar JN, Anderson LC, Chamot-Rooke J, Gault J, Loo JA, Paša-Tolić L, Robinson CV, et al. A five-level classification system for proteoform identifications. Nature Methods. PMID 31451767 DOI: 10.1038/S41592-019-0573-X  0.328
2019 Donnelly DP, Rawlins CM, DeHart CJ, Fornelli L, Schachner LF, Lin Z, Lippens JL, Aluri KC, Sarin R, Chen B, Lantz C, Jung W, Johnson KR, Koller A, Wolff JJ, ... ... Agar JN, et al. Best practices and benchmarks for intact protein analysis for top-down mass spectrometry. Nature Methods. 16: 587-594. PMID 31249407 DOI: 10.1038/S41592-019-0457-0  0.356
2019 Schmitt ND, Rawlins CM, Randall EC, Wang X, Koller A, Auclair JR, Kowalski JM, Kowalski PJ, Luther E, Ivanov AR, Agar NYR, Agar JN. Genetically Encoded Fluorescent Proteins Enable High-Throughput Assignment of Cell Cohorts Directly from MALDI-MS Images. Analytical Chemistry. PMID 30839199 DOI: 10.1021/Acs.Analchem.8B03454  0.358
2018 Basu SS, Randall EC, Regan MS, Lopez BGC, Clark AR, Schmitt ND, Agar JN, Dillon DA, Agar NYR. In Vitro Liquid Extraction Surface Analysis Mass Spectrometry (ivLESA-MS) for Direct Metabolic Analysis of Adherent Cells in Culture. Analytical Chemistry. PMID 29608279 DOI: 10.1021/Acs.Analchem.8B00530  0.304
2018 Aebersold R, Agar JN, Amster IJ, Baker MS, Bertozzi CR, Boja ES, Costello CE, Cravatt BF, Fenselau C, Garcia BA, Ge Y, Gunawardena J, Hendrickson RC, Hergenrother PJ, Huber CG, et al. How many human proteoforms are there? Nature Chemical Biology. 14: 206-214. PMID 29443976 DOI: 10.1038/Nchembio.2576  0.318
2017 Wang YA, Wu D, Auclair JR, Salisbury JP, Sarin R, Tang Y, Mozdzierz NJ, Shah K, Zhang AF, Wu SL, Agar JN, Love JC, Love KR, Hancock WS. Integrated bottom-up and top-down liquid chromatography-mass spectrometry (LC-MS) for characterization of recombinant human growth hormone degradation products. Analytical Chemistry. PMID 29096433 DOI: 10.1021/Acs.Analchem.7B03026  0.323
2016 Quijada JV, Schmitt ND, Salisbury JP, Auclair JR, Agar JN. Heavy Sugar and Heavy Water Create Tunable Intact Protein Mass Increases for Quantitative Mass Spectrometry in Any Feed and Organism. Analytical Chemistry. PMID 27744677 DOI: 10.1021/Acs.Analchem.6B03234  0.329
2014 Salisbury JP, Liu Q, Agar JN. QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra with resolved isotopic fine structure. Bmc Bioinformatics. 15: 403. PMID 25495703 DOI: 10.1186/S12859-014-0403-1  0.386
2014 Rotunno MS, Auclair JR, Maniatis S, Shaffer SA, Agar J, Bosco DA. Identification of a misfolded region in superoxide dismutase 1 that is exposed in amyotrophic lateral sclerosis. The Journal of Biological Chemistry. 289: 28527-38. PMID 25164820 DOI: 10.1074/Jbc.M114.581801  0.337
2014 Auclair JR, Salisbury JP, Johnson JL, Petsko GA, Ringe D, Bosco DA, Agar NY, Santagata S, Durham HD, Agar JN. Artifacts to avoid while taking advantage of top-down mass spectrometry based detection of protein S-thiolation. Proteomics. 14: 1152-7. PMID 24634066 DOI: 10.1002/Pmic.201300450  0.325
2014 Liu Q, Easterling ML, Agar JN. Resolving isotopic fine structure to detect and quantify natural abundance- and hydrogen/deuterium exchange-derived isotopomers. Analytical Chemistry. 86: 820-5. PMID 24328359 DOI: 10.1021/Ac403365G  0.382
2014 Liu Q, Cobb JS, Johnson JL, Wang Q, Agar JN. Performance comparisons of nano-LC systems, electrospray sources and LC-MS-MS platforms. Journal of Chromatographic Science. 52: 120-7. PMID 23329739 DOI: 10.1093/Chromsci/Bms255  0.628
2013 Salisbury JP, Boggio KJ, Hsu YW, Quijada J, Sivachenko A, Gloeckner G, Kowalski PJ, Easterling ML, Rosbash M, Agar JN. A rapid MALDI-TOF mass spectrometry workflow for Drosophila melanogaster differential neuropeptidomics. Molecular Brain. 6: 60. PMID 24373546 DOI: 10.1186/1756-6606-6-60  0.355
2013 Auclair JR, Brodkin HR, D'Aquino JA, Petsko GA, Ringe D, Agar JN. Structural consequences of cysteinylation of Cu/Zn-superoxide dismutase Biochemistry. 52: 6145-6150. PMID 23919400 DOI: 10.1021/Bi400613H  0.303
2012 Auclair JR, Somasundaran M, Green KM, Evans JE, Schiffer CA, Ringe D, Petsko GA, Agar JN. Mass spectrometry tools for analysis of intermolecular interactions. Methods in Molecular Biology (Clifton, N.J.). 896: 387-98. PMID 22821539 DOI: 10.1007/978-1-4614-3704-8_26  0.356
2011 Wang W, Perovic I, Chittuluru J, Kaganovich A, Nguyen LT, Liao J, Auclair JR, Johnson D, Landeru A, Simorellis AK, Ju S, Cookson MR, Asturias FJ, Agar JN, Webb BN, et al. A soluble α-synuclein construct forms a dynamic tetramer. Proceedings of the National Academy of Sciences of the United States of America. 108: 17797-802. PMID 22006323 DOI: 10.1073/Pnas.1113260108  0.302
2011 Boggio KJ, Obasuyi E, Sugino K, Nelson SB, Agar NY, Agar JN. Recent advances in single-cell MALDI mass spectrometry imaging and potential clinical impact. Expert Review of Proteomics. 8: 591-604. PMID 21999830 DOI: 10.1586/Epr.11.53  0.331
2011 Brodkin HR, Novak WRP, Milne AC, D'Aquino JA, Karabacak NM, Goldberg IG, Agar JN, Payne MS, Petsko GA, Ondrechen MJ, Ringe D. Evidence of the participation of remote residues in the catalytic activity of co-type nitrile hydratase from Pseudomonas putida Biochemistry. 50: 4923-4935. PMID 21473592 DOI: 10.1021/Bi101761E  0.722
2010 Auclair JR, Boggio KJ, Petsko GA, Ringe D, Agar JN. Strategies for stabilizing superoxide dismutase (SOD1), the protein destabilized in the most common form of familial amyotrophic lateral sclerosis Proceedings of the National Academy of Sciences of the United States of America. 107: 21394-21399. PMID 21098299 DOI: 10.1073/Pnas.1015463107  0.313
2010 Bosco DA, Morfini G, Karabacak NM, Song Y, Gros-Louis F, Pasinelli P, Goolsby H, Fontaine BA, Lemay N, McKenna-Yasek D, Frosch MP, Agar JN, Julien JP, Brady ST, Brown RH. Wild-type and mutant SOD1 share an aberrant conformation and a common pathogenic pathway in ALS. Nature Neuroscience. 13: 1396-403. PMID 20953194 DOI: 10.1038/Nn.2660  0.723
2010 Li L, Karabacak NM, Cobb JS, Wang Q, Hong P, Agar JN. Memory-efficient calculation of the isotopic mass states of a molecule. Rapid Communications in Mass Spectrometry : Rcm. 24: 2689-96. PMID 20814974 DOI: 10.1002/Rcm.4666  0.718
2010 Karabacak NM, Easterling ML, Agar NY, Agar JN. Transformative effects of higher magnetic field in Fourier transform ion cyclotron resonance mass spectrometry. Journal of the American Society For Mass Spectrometry. 21: 1218-22. PMID 20444622 DOI: 10.1016/J.Jasms.2010.03.033  0.723
2010 Cobb JS, Easterling ML, Agar JN. Structural characterization of intact proteins is enhanced by prevalent fragmentation pathways rarely observed for peptides. Journal of the American Society For Mass Spectrometry. 21: 949-59. PMID 20303285 DOI: 10.1016/J.Jasms.2010.02.009  0.637
2009 Molnar KS, Karabacak NM, Johnson JL, Wang Q, Tiwari A, Hayward LJ, Coales SJ, Hamuro Y, Agar JN. A common property of amyotrophic lateral sclerosis-associated variants: destabilization of the copper/zinc superoxide dismutase electrostatic loop. The Journal of Biological Chemistry. 284: 30965-73. PMID 19635794 DOI: 10.1074/Jbc.M109.023945  0.727
2009 Karabacak NM, Li L, Tiwari A, Hayward LJ, Hong P, Easterling ML, Agar JN. Sensitive and specific identification of wild type and variant proteins from 8 to 669 kDa using top-down mass spectrometry. Molecular & Cellular Proteomics : McP. 8: 846-56. PMID 19074999 DOI: 10.1074/Mcp.M800099-Mcp200  0.75
2008 Li L, Kresh JA, Karabacak NM, Cobb JS, Agar JN, Hong P. A hierarchical algorithm for calculating the isotopic fine structures of molecules. Journal of the American Society For Mass Spectrometry. 19: 1867-74. PMID 18818092 DOI: 10.1016/J.Jasms.2008.08.008  0.722
2008 Kabashi E, Agar JN, Hong Y, Taylor DM, Minotti S, Figlewicz DA, Durham HD. Proteasomes remain intact, but show early focal alteration in their composition in a mouse model of amyotrophic lateral sclerosis. Journal of Neurochemistry. 105: 2353-66. PMID 18315558 DOI: 10.1111/J.1471-4159.2008.05317.X  0.31
2007 Taylor DM, Gibbs BF, Kabashi E, Minotti S, Durham HD, Agar JN. Tryptophan 32 potentiates aggregation and cytotoxicity of a copper/zinc superoxide dismutase mutant associated with familial amyotrophic lateral sclerosis. The Journal of Biological Chemistry. 282: 16329-35. PMID 17389599 DOI: 10.1074/Jbc.M610119200  0.313
2005 Smith AD, Jameson GN, Dos Santos PC, Agar JN, Naik S, Krebs C, Frazzon J, Dean DR, Huynh BH, Johnson MK. NifS-mediated assembly of [4Fe-4S] clusters in the N- and C-terminal domains of the NifU scaffold protein. Biochemistry. 44: 12955-69. PMID 16185064 DOI: 10.1021/Bi051257I  0.457
2001 Krebs C, Agar JN, Smith AD, Frazzon J, Dean DR, Huynh BH, Johnson MK. IscA, an alternate scaffold for Fe-S cluster biosynthesis. Biochemistry. 40: 14069-80. PMID 11705400 DOI: 10.1021/Bi015656Z  0.469
2001 Smith AD, Agar JN, Johnson KA, Frazzon J, Amster IJ, Dean DR, Johnson MK. Sulfur transfer from IscS to IscU: the first step in iron-sulfur cluster biosynthesis. Journal of the American Chemical Society. 123: 11103-4. PMID 11686732 DOI: 10.1021/Ja016757N  0.43
2000 Olson JW, Agar JN, Johnson MK, Maier RJ. Characterization of the NifU and NifS Fe-S cluster formation proteins essential for viability in Helicobacter pylori. Biochemistry. 39: 16213-9. PMID 11123951 DOI: 10.1021/Bi001744S  0.401
2000 Agar JN, Krebs C, Frazzon J, Huynh BH, Dean DR, Johnson MK. IscU as a scaffold for iron-sulfur cluster biosynthesis: sequential assembly of [2Fe-2S] and [4Fe-4S] clusters in IscU. Biochemistry. 39: 7856-62. PMID 10891064 DOI: 10.1021/Bi000931N  0.449
2000 Agar JN, Yuvaniyama P, Jack RF, Cash VL, Smith AD, Dean DR, Johnson MK. Modular organization and identification of a mononuclear iron-binding site within the NifU protein. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 5: 167-77. PMID 10819462 DOI: 10.1007/S007750050361  0.467
2000 Yuvaniyama P, Agar JN, Cash VL, Johnson MK, Dean DR. NifS-directed assembly of a transient [2Fe-2S] cluster within the NifU protein. Proceedings of the National Academy of Sciences of the United States of America. 97: 599-604. PMID 10639125 DOI: 10.1073/Pnas.97.2.599  0.453
1998 Goodwin PJ, Agar JN, Roll JT, Roberts GP, Johnson MK, Dean DR. The Azotobacter vinelandii NifEN complex contains two identical [4Fe-4S] clusters. Biochemistry. 37: 10420-8. PMID 9671511 DOI: 10.1021/Bi980435N  0.465
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