Philip Matsumura, Ph.D. - Publications

Affiliations: 
University of Illinois at Chicago, Chicago, IL, United States 

51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2011 Lee YY, Barker CS, Matsumura P, Belas R. Refining the binding of the Escherichia coli flagellar master regulator, FlhD4C2, on a base-specific level. Journal of Bacteriology. 193: 4057-68. PMID 21685294 DOI: 10.1128/Jb.00442-11  0.314
2006 Wang S, Fleming RT, Westbrook EM, Matsumura P, McKay DB. Structure of the Escherichia coli FlhDC complex, a prokaryotic heteromeric regulator of transcription. Journal of Molecular Biology. 355: 798-808. PMID 16337229 DOI: 10.1016/J.Jmb.2005.11.020  0.333
2004 Barker CS, Prüss BM, Matsumura P. Increased motility of Escherichia coli by insertion sequence element integration into the regulatory region of the flhD operon. Journal of Bacteriology. 186: 7529-37. PMID 15516564 DOI: 10.1128/Jb.186.22.7529-7537.2004  0.328
2004 Dyer CM, Quillin ML, Campos A, Lu J, McEvoy MM, Hausrath AC, Westbrook EM, Matsumura P, Matthews BW, Dahlquist FW. Structure of the constitutively active double mutant CheYD13K Y106W alone and in complex with a FliM peptide. Journal of Molecular Biology. 342: 1325-35. PMID 15351654 DOI: 10.1016/J.Jmb.2004.07.084  0.362
2004 Kapatral V, Campbell JW, Minnich SA, Thomson NR, Matsumura P, Prüss BM. Gene array analysis of Yersinia enterocolitica FlhD and FlhC: regulation of enzymes affecting synthesis and degradation of carbamoylphosphate. Microbiology (Reading, England). 150: 2289-300. PMID 15256571 DOI: 10.1099/Mic.0.26814-0  0.425
2004 O'Connor C, Matsumura P. The accessibility of cys-120 in CheA(S) is important for the binding of CheZ and enhancement of CheZ phosphatase activity. Biochemistry. 43: 6909-16. PMID 15170328 DOI: 10.1021/Bi035592N  0.332
2003 Prüss BM, Campbell JW, Van Dyk TK, Zhu C, Kogan Y, Matsumura P. FlhD/FlhC is a regulator of anaerobic respiration and the Entner-Doudoroff pathway through induction of the methyl-accepting chemotaxis protein Aer. Journal of Bacteriology. 185: 534-43. PMID 12511500 DOI: 10.1128/Jb.185.2.534-543.2003  0.42
2002 Matsumura P. Last, but not least. Nature Structural Biology. 9: 563-4. PMID 12145642 DOI: 10.1038/Nsb0802-563  0.341
2001 Wang S, Matsumura P, Westbrook EM. Crystallization and preliminary X-ray crystallographic analysis of FlhD/FlhC complex from Escherichia coli. Acta Crystallographica. Section D, Biological Crystallography. 57: 734-6. PMID 11320321 DOI: 10.1107/S0907444901003213  0.315
2001 Prüss BM, Liu X, Hendrickson W, Matsumura P. FlhD/FlhC-regulated promoters analyzed by gene array and lacZ gene fusions. Fems Microbiology Letters. 197: 91-7. PMID 11287152 DOI: 10.1111/J.1574-6968.2001.Tb10588.X  0.426
2001 Campos A, Matsumura P. Extensive alanine scanning reveals protein-protein and protein-DNA interaction surfaces in the global regulator FlhD from Escherichia coli. Molecular Microbiology. 39: 581-94. PMID 11169100 DOI: 10.1046/J.1365-2958.2001.02248.X  0.451
2001 Campos A, Zhang RG, Alkire RW, Matsumura P, Westbrook EM. Crystal structure of the global regulator FlhD from Escherichia coli at 1.8 A resolution. Molecular Microbiology. 39: 567-80. PMID 11169099 DOI: 10.1046/J.1365-2958.2001.02247.X  0.396
2000 Halkides CJ, McEvoy MM, Casper E, Matsumura P, Volz K, Dahlquist FW. The 1.9 A resolution crystal structure of phosphono-CheY, an analogue of the active form of the response regulator, CheY. Biochemistry. 39: 5280-6. PMID 10819997 DOI: 10.1021/Bi9925524  0.326
1998 Campos A, Matsumura P, Volz K. Crystallization and preliminary X-ray analysis of FlhD from Escherichia coli. Journal of Structural Biology. 123: 269-71. PMID 9878582 DOI: 10.1006/Jsbi.1998.4036  0.407
1998 Halkides CJ, Zhu X, Phillion DP, Matsumura P, Dahlquist FW. Synthesis and biochemical characterization of an analogue of CheY-phosphate, a signal transduction protein in bacterial chemotaxis. Biochemistry. 37: 13674-80. PMID 9753454 DOI: 10.1021/Bi9806293  0.383
1998 Shukla D, Zhu XY, Matsumura P. Flagellar motor-switch binding face of CheY and the biochemical basis of suppression by CheY mutants that compensate for motor-switch defects in Escherichia coli. The Journal of Biological Chemistry. 273: 23993-9. PMID 9727015 DOI: 10.1074/Jbc.273.37.23993  0.366
1997 Zhu X, Volz K, Matsumura P. The CheZ-binding surface of CheY overlaps the CheA- and FliM-binding surfaces. The Journal of Biological Chemistry. 272: 23758-64. PMID 9295320 DOI: 10.1074/Jbc.272.38.23758  0.343
1997 Dowd JP, Matsumura P. The use of flash photolysis for a high-resolution temporal and spatial analysis of bacterial chemotactic behaviour: CheZ is not always necessary for chemotaxis. Molecular Microbiology. 25: 295-302. PMID 9282741 DOI: 10.1046/J.1365-2958.1997.4631830.X  0.346
1997 Prüss BM, Markovic D, Matsumura P. The Escherichia coli flagellar transcriptional activator flhD regulates cell division through induction of the acid response gene cadA. Journal of Bacteriology. 179: 3818-21. PMID 9171439 DOI: 10.1128/Jb.179.11.3818-3821.1997  0.383
1997 Zhu X, Rebello J, Matsumura P, Volz K. Crystal structures of CheY mutants Y106W and T87I/Y106W. CheY activation correlates with movement of residue 106. The Journal of Biological Chemistry. 272: 5000-6. PMID 9030562 DOI: 10.1074/Jbc.272.8.5000  0.333
1996 Wang H, Matsumura P. Characterization of the CheAS/CheZ complex: a specific interaction resulting in enhanced dephosphorylating activity on CheY-phosphate. Molecular Microbiology. 19: 695-703. PMID 8820640 DOI: 10.1046/J.1365-2958.1996.393934.X  0.376
1996 Zhu X, Amsler CD, Volz K, Matsumura P. Tyrosine 106 of CheY plays an important role in chemotaxis signal transduction in Escherichia coli. Journal of Bacteriology. 178: 4208-15. PMID 8763950 DOI: 10.1128/Jb.178.14.4208-4215.1996  0.586
1996 Zhao R, Amsler CD, Matsumura P, Khan S. FliG and FliM distribution in the Salmonella typhimurium cell and flagellar basal bodies. Journal of Bacteriology. 178: 258-65. PMID 8550426 DOI: 10.1128/Jb.178.1.258-265.1996  0.579
1995 Liu X, Fujita N, Ishihama A, Matsumura P. The C-terminal region of the alpha subunit of Escherichia coli RNA polymerase is required for transcriptional activation of the flagellar level II operons by the FlhD/FlhC complex. Journal of Bacteriology. 177: 5186-8. PMID 7665504 DOI: 10.1128/Jb.177.17.5186-5188.1995  0.307
1995 Ganguli S, Wang H, Matsumura P, Volz K. Uncoupled phosphorylation and activation in bacterial chemotaxis. The 2.1-A structure of a threonine to isoleucine mutant at position 87 of CheY. The Journal of Biological Chemistry. 270: 17386-93. PMID 7615544 DOI: 10.1074/Jbc.270.29.17386  0.362
1995 Shukla D, Matsumura P. Mutations leading to altered CheA binding cluster on a face of CheY. The Journal of Biological Chemistry. 270: 24414-9. PMID 7592655 DOI: 10.1074/Jbc.270.41.24414  0.332
1995 Liu X, Matsumura P. An alternative sigma factor controls transcription of flagellar class-III operons in Escherichia coli: gene sequence, overproduction, purification and characterization. Gene. 164: 81-4. PMID 7590326 DOI: 10.1016/0378-1119(95)00480-T  0.457
1995 Swanson RV, Lowry DF, Matsumura P, McEvoy MM, Simon MI, Dahlquist FW. Localized perturbations in CheY structure monitored by NMR identify a CheA binding interface. Nature Structural Biology. 2: 906-10. PMID 7552716 DOI: 10.1038/Nsb1095-906  0.536
1994 Malakooti J, Ely B, Matsumura P. Molecular characterization, nucleotide sequence, and expression of the fliO, fliP, fliQ, and fliR genes of Escherichia coli. Journal of Bacteriology. 176: 189-97. PMID 8282695 DOI: 10.1128/Jb.176.1.189-197.1994  0.487
1994 Moy FJ, Lowry DF, Matsumura P, Dahlquist FW, Krywko JE, Domaille PJ. Assignments, secondary structure, global fold, and dynamics of chemotaxis Y protein using three- and four-dimensional heteronuclear (13C,15N) NMR spectroscopy. Biochemistry. 33: 10731-42. PMID 8075074 DOI: 10.1021/Bi00201A022  0.32
1994 Liu X, Matsumura P. The FlhD/FlhC complex, a transcriptional activator of the Escherichia coli flagellar class II operons. Journal of Bacteriology. 176: 7345-51. PMID 7961507 DOI: 10.1128/Jb.176.23.7345-7351.1994  0.381
1993 Amsler CD, Cho M, Matsumura P. Multiple factors underlying the maximum motility of Escherichia coli as cultures enter post-exponential growth. Journal of Bacteriology. 175: 6238-44. PMID 8407796 DOI: 10.1128/Jb.175.19.6238-6244.1993  0.534
1993 Roman SJ, Frantz BB, Matsumura P. Gene sequence, overproduction, purification and determination of the wild-type level of the Escherichia coli flagellar switch protein FliG. Gene. 133: 103-8. PMID 8224881 DOI: 10.1016/0378-1119(93)90232-R  0.435
1992 Roman SJ, Meyers M, Volz K, Matsumura P. A chemotactic signaling surface on CheY defined by suppressors of flagellar switch mutations. Journal of Bacteriology. 174: 6247-55. PMID 1400175 DOI: 10.1128/Jb.174.19.6247-6255.1992  0.409
1991 Volz K, Matsumura P. Crystal structure of Escherichia coli CheY refined at 1.7-A resolution. The Journal of Biological Chemistry. 266: 15511-9. PMID 1869568 DOI: 10.2210/Pdb3Chy/Pdb  0.309
1989 Malakooti J, Komeda Y, Matsumura P. DNA sequence analysis, gene product identification, and localization of flagellar motor components of Escherichia coli. Journal of Bacteriology. 171: 2728-34. PMID 2651416 DOI: 10.1128/Jb.171.5.2728-2734.1989  0.497
1988 Hess JF, Bourret RB, Oosawa K, Matsumura P, Simon MI. Protein phosphorylation and bacterial chemotaxis. Cold Spring Harbor Symposia On Quantitative Biology. 53: 41-8. PMID 3076085 DOI: 10.1101/Sqb.1988.053.01.008  0.469
1988 Iino T, Komeda Y, Kutsukake K, Macnab RM, Matsumura P, Parkinson JS, Simon MI, Yamaguchi S. New unified nomenclature for the flagellar genes of Escherichia coli and Salmonella typhimurium. Microbiological Reviews. 52: 533-5. PMID 3070322  0.31
1988 Sager BM, Sekelsky JJ, Matsumura P, Adler J. Use of a computer to assay motility in bacteria. Analytical Biochemistry. 173: 271-7. PMID 3056105 DOI: 10.1016/0003-2697(88)90189-3  0.313
1988 Bartlett DH, Frantz BB, Matsumura P. Flagellar transcriptional activators FlbB and FlaI: gene sequences and 5' consensus sequences of operons under FlbB and FlaI control. Journal of Bacteriology. 170: 1575-81. PMID 2832369 DOI: 10.1128/Jb.170.4.1575-1581.1988  0.596
1988 Iino T, Komeda Y, Kutsukake K, Macnab RM, Matsumura P, Parkinson JS, Simon MI, Yamaguchi S. New unified nomenclature for the flagellar genes of Escherichia coli and Salmonella typhimurium. Microbiological Reviews. 52: 533-535. DOI: 10.1128/mmbr.52.4.533-535.1988  0.533
1987 Hess JF, Oosawa K, Matsumura P, Simon MI. Protein phosphorylation is involved in bacterial chemotaxis. Proceedings of the National Academy of Sciences of the United States of America. 84: 7609-13. PMID 3313398 DOI: 10.1073/Pnas.84.21.7609  0.522
1986 Bartlett DH, Matsumura P. Behavioral responses to chemical cues by bacteria. Journal of Chemical Ecology. 12: 1071-89. PMID 24307048 DOI: 10.1007/Bf01638997  0.608
1986 Stader J, Matsumura P, Vacante D, Dean GE, Macnab RM. Nucleotide sequence of the Escherichia coli motB gene and site-limited incorporation of its product into the cytoplasmic membrane. Journal of Bacteriology. 166: 244-52. PMID 3007435 DOI: 10.1128/Jb.166.1.244-252.1986  0.305
1984 Bartlett DH, Matsumura P. Identification of Escherichia coli region III flagellar gene products and description of two new flagellar genes. Journal of Bacteriology. 160: 577-85. PMID 6094477  0.63
1984 Matsumura P, Rydel JJ, Linzmeier R, Vacante D. Overexpression and sequence of the Escherichia coli cheY gene and biochemical activities of the CheY protein. Journal of Bacteriology. 160: 36-41. PMID 6090423  0.352
1978 Komeda Y, Silverman M, Matsumura P, Simon M. Genes for the hook-basal body proteins of the flagellar apparatus in Escherichia coli. Journal of Bacteriology. 134: 655-67. PMID 350831 DOI: 10.1128/Jb.134.2.655-667.1978  0.693
1977 Matsumura P, Silverman M, Simon M. Synthesis of mot and che gene products of Escherichia coli programmed by hybrid ColE1 plasmids in minicells. Journal of Bacteriology. 132: 996-1002. PMID 336614 DOI: 10.1128/Jb.132.3.996-1002.1977  0.678
1977 Matsumura P, Silverman M, Simon M. Cloning and expression of the flagellar hook gene on hybird plasmids in minicells. Nature. 265: 758-60. PMID 323721 DOI: 10.1038/265758A0  0.604
1977 Silverman M, Matsumura P, Hilmen M, Simon M. Characterization of lambda Escherichia coli hybrids carrying chemotaxis genes. Journal of Bacteriology. 130: 877-87. PMID 233725 DOI: 10.1128/Jb.130.2.877-887.1977  0.622
1976 Silverman M, Matsumura P, Simon M. The identification of the mot gene product with Escherichia coli-lambda hybrids. Proceedings of the National Academy of Sciences of the United States of America. 73: 3126-30. PMID 787985 DOI: 10.1073/Pnas.73.9.3126  0.699
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