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David Swigon - Publications

Affiliations: 
Mathematics University of Pittsburgh, Pittsburgh, PA, United States 
Area:
Mathematics, Applied Mathematics, General Biophysics
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Ramirez-Zuniga I, Rubin JE, Swigon D, Clermont G. Mathematical Modeling of Energy Consumption in the Acute Inflammatory Response. Journal of Theoretical Biology. PMID 30149010 DOI: 10.1016/J.Jtbi.2018.08.033  0.313
2015 Price I, Mochan-Keef ED, Swigon D, Ermentrout GB, Lukens S, Toapanta FR, Ross TM, Clermont G. The inflammatory response to influenza A virus (H1N1): An experimental and mathematical study. Journal of Theoretical Biology. 374: 83-93. PMID 25843213 DOI: 10.1016/J.Jtbi.2015.03.017  0.311
2014 Wei J, Czapla L, Grosner MA, Swigon D, Olson WK. DNA topology confers sequence specificity to nonspecific architectural proteins. Proceedings of the National Academy of Sciences of the United States of America. 111: 16742-7. PMID 25385626 DOI: 10.1073/Pnas.1405016111  0.322
2014 Biton YY, Kumar S, Dunlap D, Swigon D. Lac repressor mediated DNA looping: Monte Carlo simulation of constrained DNA molecules complemented with current experimental results. Plos One. 9: e92475. PMID 24800809 DOI: 10.1371/Journal.Pone.0092475  0.326
2014 Mochan E, Swigon D, Ermentrout GB, Lukens S, Clermont G. A mathematical model of intrahost pneumococcal pneumonia infection dynamics in murine strains. Journal of Theoretical Biology. 353: 44-54. PMID 24594373 DOI: 10.1016/J.Jtbi.2014.02.021  0.311
2014 Stepien TL, Swigon D. Traveling waves in a one-dimensional elastic continuum model of cell layer migration with stretch-dependent proliferation Siam Journal On Applied Dynamical Systems. 13: 1489-1516. DOI: 10.1137/130941407  0.636
2013 Olson WK, Grosner MA, Czapla L, Swigon D. Structural insights into the role of architectural proteins in DNA looping deduced from computer simulations. Biochemical Society Transactions. 41: 559-64. PMID 23514154 DOI: 10.1042/Bst20120341  0.319
2013 Swigon D, Lim S, Kim Y. Dynamical simulations of DNA supercoiling and compression. Biochemical Society Transactions. 41: 554-8. PMID 23514153 DOI: 10.1042/Bst20120316  0.346
2013 Czapla L, Grosner MA, Swigon D, Olson WK. Interplay of protein and DNA structure revealed in simulations of the lac operon. Plos One. 8: e56548. PMID 23457581 DOI: 10.1371/Journal.Pone.0056548  0.343
2013 Arciero JC, Mi Q, Branca M, Hackam D, Swigon D. Using a continuum model to predict closure time of gaps in intestinal epithelial cell layers. Wound Repair and Regeneration : Official Publication of the Wound Healing Society [and] the European Tissue Repair Society. 21: 256-65. PMID 23421747 DOI: 10.1111/J.1524-475X.2012.00865.X  0.326
2013 Kumar S, Priest D, Biton Y, Swigon D, Shearwin K, Dodd I, Dunlap D. In Silico, In Vitro, and In Vivo Estimation of J-Factors for LAC Repressor-Mediated DNA Loop Formation Biophysical Journal. 104: 174a-175a. DOI: 10.1016/J.Bpj.2012.11.983  0.316
2012 Penner K, Ermentrout B, Swigon D. Pattern formation in a model of acute inflammation Siam Journal On Applied Dynamical Systems. 11: 629-660. DOI: 10.1137/110834081  0.305
2012 Lukens S, DePasse JV, Swigon D, Miller D, Rosenfield R, Ghedin E, Clermont G. Linking population-level and host-level models of influenza A virus Journal of Critical Care. 27. DOI: 10.1016/J.Jcrc.2012.01.034  0.326
2012 Kocsis A, Swigon D. DNA stretching modeled at the base pair level: Overtwisting and shear instability in elastic linkages International Journal of Non-Linear Mechanics. 47: 639-654. DOI: 10.1016/J.Ijnonlinmec.2011.10.008  0.371
2011 Arciero JC, Mi Q, Branca MF, Hackam DJ, Swigon D. Continuum model of collective cell migration in wound healing and colony expansion. Biophysical Journal. 100: 535-43. PMID 21281567 DOI: 10.1016/J.Bpj.2010.11.083  0.359
2011 Lim S, Kim Y, Swigon D. Dynamics of an electrostatically charged elastic rod in fluid Proceedings of the Royal Society a: Mathematical, Physical and Engineering Sciences. 467: 569-590. DOI: 10.1098/Rspa.2010.0174  0.304
2011 Czapla L, Swigon D, Olson WK. The Role of Architectural Proteins in Lac-Mediated DNA Looping Biophysical Journal. 100: 71a. DOI: 10.1016/J.Bpj.2010.12.588  0.342
2010 Swigon D, Arciero J, Mi Q, Hackam D. Continuum Elastic Model of Epithelial Sheet Migration Biophysical Journal. 98: 163a. DOI: 10.1016/J.Bpj.2009.12.878  0.354
2008 Swigon D, Olson WK. Mesoscale modeling of multi-protein-DNA assemblies: the role of the catabolic activator protein in Lac-repressor-mediated looping. International Journal of Non-Linear Mechanics. 43: 1082-1093. PMID 23874000 DOI: 10.1016/J.Ijnonlinmec.2008.07.003  0.323
2008 Czapla L, Swigon D, Olson WK. Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte Carlo simulations. Journal of Molecular Biology. 382: 353-70. PMID 18586040 DOI: 10.1016/J.Jmb.2008.05.088  0.35
2007 Mi Q, Swigon D, Rivière B, Cetin S, Vodovotz Y, Hackam DJ. One-dimensional elastic continuum model of enterocyte layer migration. Biophysical Journal. 93: 3745-52. PMID 17704181 DOI: 10.1529/Biophysj.107.112326  0.34
2007 Hancioglu B, Swigon D, Clermont G. A dynamical model of human immune response to influenza A virus infection. Journal of Theoretical Biology. 246: 70-86. PMID 17266989 DOI: 10.1016/J.Jtbi.2006.12.015  0.316
2007 Mi Q, Swigon D, Riviere B. Two-dimensional elastic continuum model of enterocyte layer migration Journal of Critical Care. 22: 350. DOI: 10.1016/J.Jcrc.2007.10.034  0.339
2007 Biton YY, Coleman BD, Swigon D. On bifurcations of equilibria of intrinsically curved, electrically charged, rod-like structures that model DNA molecules in solution Journal of Elasticity. 87: 187-210. DOI: 10.1007/S10659-007-9103-7  0.356
2006 Czapla L, Swigon D, Olson WK. Sequence-Dependent Effects in the Cyclization of Short DNA. Journal of Chemical Theory and Computation. 2: 685-95. PMID 26626674 DOI: 10.1021/Ct060025+  0.341
2006 Swigon D, Coleman BD, Olson WK. Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation. Proceedings of the National Academy of Sciences of the United States of America. 103: 9879-84. PMID 16785444 DOI: 10.1073/Pnas.0603557103  0.345
2004 Olson WK, Swigon D, Coleman BD. Implications of the dependence of the elastic properties of DNA on nucleotide sequence. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 362: 1403-22. PMID 15306458 DOI: 10.1098/Rsta.2004.1380  0.321
2004 Coleman BD, Swigon D. Theory of self-contact in Kirchhoff rods with applications to supercoiling of knotted and unknotted DNA plasmids. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 362: 1281-99. PMID 15306451 DOI: 10.1098/Rsta.2004.1393  0.347
2004 Lawson CL, Swigon D, Murakami KS, Darst SA, Berman HM, Ebright RH. Catabolite activator protein: DNA binding and transcription activation. Current Opinion in Structural Biology. 14: 10-20. PMID 15102444 DOI: 10.1016/J.Sbi.2004.01.012  0.3
2003 Coleman BD, Olson WK, Swigon D. Theory of sequence-dependent DNA elasticity Journal of Chemical Physics. 118: 7127-7140. DOI: 10.1063/1.1559690  0.353
2001 Coleman BD, Swigon D. Theory of supercoiled elastic rings with self-contact and its application to DNA plasmids Journal of Elasticity. 60: 173-221. DOI: 10.1023/A:1010911113919  0.354
2000 Coleman BD, Swigon D, Tobias I. Elastic stability of DNA configurations. II. Supercoiled plasmids with self-contact Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 61: 759-770. PMID 11046320 DOI: 10.1103/Physreve.61.759  0.337
2000 Tobias I, Swigon D, Coleman BD. Elastic stability of DNA configurations. I. General theory Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 61: 747-758. PMID 11046319 DOI: 10.1103/Physreve.61.747  0.366
1995 Coleman BD, Tobias I, Swigon D. Theory of the influence of end conditions on self-contact in DNA loops The Journal of Chemical Physics. 103: 9101-9109. DOI: 10.1063/1.470021  0.35
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