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Mihai Ciubotaru, Ph.D. - Publications

Affiliations: 
2000 State University of New York, Buffalo, Buffalo, NY, United States 
Area:
Molecular Biology
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13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Ciubotaru M, Musat MG, Surleac M, Ionita E, Petrescu AJ, Abele E, Abele R. The Design of New HIV-IN Tethered Bifunctional Inhibitors using Multiple Microdomain Targeted Docking. Current Medicinal Chemistry. PMID 29623824 DOI: 10.2174/0929867325666180406114405  0.307
2015 Ciubotaru M. 113 V(D)J recombination targeted in cis by transcription induced DNA supercoiling. Journal of Biomolecular Structure & Dynamics. 33: 71. PMID 26103324 DOI: 10.1080/07391102.2015.1032746  0.46
2015 Ciubotaru M, Surleac MD, Metskas LA, Koo P, Rhoades E, Petrescu AJ, Schatz DG. The architecture of the 12RSS in V(D)J recombination signal and synaptic complexes. Nucleic Acids Research. 43: 917-31. PMID 25550426 DOI: 10.1093/Nar/Gku1348  0.494
2014 Ciubotaru M, Surleac M, Musat MG, Rusu AM, Ionita E, Albu PCC. DNA bending in the synaptic complex in V(D)J recombination: turning an ancestral transpososome upside down. Discoveries (Craiova, Romania). 2: e13. PMID 32309545 DOI: 10.15190/d.2014.5  0.396
2013 Ciubotaru M, Trexler AJ, Spiridon LN, Surleac MD, Rhoades E, Petrescu AJ, Schatz DG. RAG and HMGB1 create a large bend in the 23RSS in the V(D)J recombination synaptic complexes. Nucleic Acids Research. 41: 2437-54. PMID 23293004 DOI: 10.1093/Nar/Gks1294  0.439
2009 Yin FF, Bailey S, Innis CA, Ciubotaru M, Kamtekar S, Steitz TA, Schatz DG. Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis. Nature Structural & Molecular Biology. 16: 499-508. PMID 19396172 DOI: 10.1038/Nsmb.1593  0.678
2007 Ciubotaru M, Kriatchko AN, Swanson PC, Bright FV, Schatz DG. Fluorescence resonance energy transfer analysis of recombination signal sequence configuration in the RAG1/2 synaptic complex. Molecular and Cellular Biology. 27: 4745-58. PMID 17470556 DOI: 10.1128/Mcb.00177-07  0.393
2006 Koudelka GB, Mauro SA, Ciubotaru M. Indirect readout of DNA sequence by proteins: the roles of DNA sequence-dependent intrinsic and extrinsic forces. Progress in Nucleic Acid Research and Molecular Biology. 81: 143-77. PMID 16891171 DOI: 10.1016/S0079-6603(06)81004-4  0.518
2004 Ciubotaru M, Schatz DG. Synapsis of recombination signal sequences located in cis and DNA underwinding in V(D)J recombination. Molecular and Cellular Biology. 24: 8727-44. PMID 15367690 DOI: 10.1128/Mcb.24.19.8727-8744.2004  0.626
2003 Ciubotaru M, Koudelka GB. DNA-stimulated assembly of oligomeric bacteriophage 434 repressor: evidence for cooperative binding by recruitment. Biochemistry. 42: 4253-64. PMID 12680780 DOI: 10.1021/bi027318j  0.621
2003 Ciubotaru M, Ptaszek LM, Baker GA, Baker SN, Bright FV, Schatz DG. RAG1-DNA binding in V(D)J recombination. Specificity and DNA-induced conformational changes revealed by fluorescence and CD spectroscopy. The Journal of Biological Chemistry. 278: 5584-96. PMID 12488446 DOI: 10.1074/Jbc.M209758200  0.624
2000 Koudelka GB, Donner AL, Ciubotaru M. Role of the N- and C- terminal dimer interfaces of 434 repressor in recognizing sequence-dependent DNA structure. Journal of Biomolecular Structure & Dynamics. 17: 135-9. PMID 22607416 DOI: 10.1080/07391102.2000.10506613  0.748
1999 Ciubotaru M, Bright FV, Ingersoll CM, Koudelka GB. DNA-induced conformational changes in bacteriophage 434 repressor. Journal of Molecular Biology. 294: 859-73. PMID 10588892 DOI: 10.1006/Jmbi.1999.3269  0.708
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