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Year Citation  Score
2019 Rech GE, Bogaerts-Márquez M, Barrón MG, Merenciano M, Villanueva-Cañas JL, Horváth V, Fiston-Lavier AS, Luyten I, Venkataram S, Quesneville H, Petrov DA, González J. Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. Plos Genetics. 15: e1007900. PMID 30753202 DOI: 10.1371/Journal.Pgen.1007900  0.48
2019 Amselem J, Cornut G, Choisne N, Alaux M, Alfama-Depauw F, Jamilloux V, Maumus F, Letellier T, Luyten I, Pommier C, Adam-Blondon AF, Quesneville H. RepetDB: a unified resource for transposable element references. Mobile Dna. 10: 6. PMID 30719103 DOI: 10.1186/S13100-019-0150-Y  0.44
2018 Plomion C, Aury JM, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholomé J, Faivre-Rampant P, Kohler A, Leplé JC, ... ... Quesneville H, et al. Oak genome reveals facets of long lifespan. Nature Plants. PMID 29915331 DOI: 10.1038/S41477-018-0172-3  0.44
2017 Gouin A, Bretaudeau A, Nam K, Gimenez S, Aury JM, Duvic B, Hilliou F, Durand N, Montagné N, Darboux I, Kuwar S, Chertemps T, Siaussat D, Bretschneider A, Moné Y, ... ... Quesneville H, et al. Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges. Scientific Reports. 7: 11816. PMID 28947760 DOI: 10.1038/S41598-017-10461-4  0.44
2017 Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, ... ... Quesneville H, et al. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature. 1-5. PMID 28092920 DOI: 10.1038/Nature20803  0.44
2016 Jouffroy O, Saha S, Mueller L, Quesneville H, Maumus F. Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening. Bmc Genomics. 17: 624. PMID 27519651 DOI: 10.1186/S12864-016-2980-Z  0.44
2016 Murat F, Louis A, Maumus F, Armero A, Cook R, Quesneville H, Crollius HR, Salse J. Erratum to: Understanding Brassicaceae evolution through ancestral genome reconstruction. Genome Biology. 17: 64. PMID 27044591 DOI: 10.1186/S13059-016-0887-2  0.44
2016 Maumus F, Quesneville H. Impact and insights from ancient repetitive elements in plant genomes. Current Opinion in Plant Biology. 30: 41-46. PMID 26874965 DOI: 10.1016/J.Pbi.2016.01.003  0.92
2016 Spannagl M, Alaux M, Lange M, Bolser DM, Bader KC, Letellier T, Kimmel E, Flores R, Pommier C, Kerhornou A, Walts B, Nussbaumer T, Grabmuller C, Chen J, Colmsee C, ... ... Quesneville H, et al. TransPLANT resources for triticeae genomic data Plant Genome. 9. DOI: 10.3835/plantgenome2015.06.0038  0.92
2015 Maumus F, Fiston-Lavier AS, Quesneville H. Impact of transposable elements on insect genomes and biology. Current Opinion in Insect Science. 7: 30-36. PMID 32846669 DOI: 10.1016/J.Cois.2015.01.001  0.44
2015 Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, ... ... Quesneville H, et al. Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants. 1: 14023. PMID 27246759 DOI: 10.1038/Nplants.2014.23  0.44
2015 Murat F, Louis A, Maumus F, Armero A, Cooke R, Quesneville H, Crollius HR, Salse J. Understanding Brassicaceae evolution through ancestral genome reconstruction. Genome Biology. 16: 262. PMID 26653025 DOI: 10.1186/S13059-015-0814-Y  0.92
2015 Amselem J, Vigouroux M, Oberhaensli S, Brown JK, Bindschedler LV, Skamnioti P, Wicker T, Spanu PD, Quesneville H, Sacristán S. Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon. Bmc Genomics. 16: 917. PMID 26556056 DOI: 10.1186/S12864-015-2185-X  0.92
2015 Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods. Mobile Dna. 6: 13. PMID 26244060 DOI: 10.1186/S13100-015-0044-6  0.44
2015 Perlin MH, Amselem J, Fontanillas E, Toh SS, Chen Z, Goldberg J, Duplessis S, Henrissat B, Young S, Zeng Q, Aguileta G, Petit E, Badouin H, Andrews J, Razeeq D, ... ... Quesneville H, et al. Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus. Bmc Genomics. 16: 461. PMID 26076695 DOI: 10.1186/S12864-015-1660-8  0.92
2015 Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Boudet N, Boury C, Canaguier A, Couloux A, Da Silva C, Duplessis S, Ehrenmann F, ... ... Quesneville H, et al. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Molecular Ecology Resources. PMID 25944057 DOI: 10.1111/1755-0998.12425  0.92
2015 Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, ... ... Quesneville H, et al. The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Research. 43: W589-98. PMID 25897122 DOI: 10.1093/Nar/Gkv350  0.92
2015 Amselem J, Lebrun MH, Quesneville H. Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes. Bmc Genomics. 16: 141. PMID 25766680 DOI: 10.1186/S12864-015-1347-1  0.92
2015 Lesur I, Le Provost G, Bento P, Da Silva C, Leplé JC, Murat F, Ueno S, Bartholomé J, Lalanne C, Ehrenmann F, Noirot C, Burban C, Léger V, Amselem J, Belser C, ... Quesneville H, et al. The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. Bmc Genomics. 16: 112. PMID 25765701 DOI: 10.1186/S12864-015-1331-9  0.92
2015 Murat F, Zhang R, Guizard S, Gavranovi? H, Flores R, Steinbach D, Quesneville H, Tannier E, Salse J. Karyotype and gene order evolution from reconstructed extinct ancestors highlight contrasts in genome plasticity of modern rosid crops. Genome Biology and Evolution. 7: 735-49. PMID 25637221 DOI: 10.1093/Gbe/Evv014  0.92
2015 Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods Mobile Dna. 6. DOI: 10.1186/s13100-015-0044-6  0.92
2015 Maumus F, Fiston-Lavier AS, Quesneville H. Impact of transposable elements on insect genomes and biology Current Opinion in Insect Science. 7: 30-36. DOI: 10.1016/j.cois.2015.01.001  0.92
2014 Geering AD, Maumus F, Copetti D, Choisne N, Zwickl DJ, Zytnicki M, McTaggart AR, Scalabrin S, Vezzulli S, Wing RA, Quesneville H, Teycheney PY. Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Nature Communications. 5: 5269. PMID 25381880 DOI: 10.1038/Ncomms6269  0.92
2014 Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, et al. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics. 46: 1034-8. PMID 25064008 DOI: 10.1038/Ng.3046  0.92
2014 Choulet F, Alberti A, Theil S, Glover N, Barbe V, Daron J, Pingault L, Sourdille P, Couloux A, Paux E, Leroy P, Mangenot S, Guilhot N, Le Gouis J, Balfourier F, ... ... Quesneville H, et al. Structural and functional partitioning of bread wheat chromosome 3B. Science (New York, N.Y.). 345: 1249721. PMID 25035497 DOI: 10.1126/Science.1249721  0.92
2014 Maumus F, Quesneville H. Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana. Nature Communications. 5: 4104. PMID 24954583 DOI: 10.1038/Ncomms5104  0.92
2014 Zytnicki M, Akhunov E, Quesneville H. Tedna: a transposable element de novo assembler. Bioinformatics (Oxford, England). 30: 2656-8. PMID 24894500 DOI: 10.1093/bioinformatics/btu365  0.92
2014 Hoede C, Arnoux S, Moisset M, Chaumier T, Inizan O, Jamilloux V, Quesneville H. PASTEC: an automatic transposable element classification tool. Plos One. 9: e91929. PMID 24786468 DOI: 10.1371/Journal.Pone.0091929  0.92
2014 Maumus F, Quesneville H. Deep investigation of Arabidopsis thaliana junk DNA reveals a continuum between repetitive elements and genomic dark matter. Plos One. 9: e94101. PMID 24709859 DOI: 10.1371/Journal.Pone.0094101  0.92
2014 Pauchet Y, Saski CA, Feltus FA, Luyten I, Quesneville H, Heckel DG. Studying the organization of genes encoding plant cell wall degrading enzymes in Chrysomela tremula provides insights into a leaf beetle genome. Insect Molecular Biology. 23: 286-300. PMID 24456018 DOI: 10.1111/Imb.12081  0.92
2014 Murat F, Zhang R, Guizard S, Flores R, Armero A, Pont C, Steinbach D, Quesneville H, Cooke R, Salse J. Shared subgenome dominance following polyploidization explains grass genome evolutionary plasticity from a seven protochromosome ancestor with 16K protogenes. Genome Biology and Evolution. 6: 12-33. PMID 24317974 DOI: 10.1093/Gbe/Evt200  0.92
2014 Lukaszewski AJ, Alberti A, Sharpe A, Kilian A, Stanca AM, Keller B, Clavijo BJ, Friebe B, Gill B, Wulff B, Chapman B, Steuernagel B, Feuillet C, Viseux C, Pozniak C, ... ... Quesneville H, et al. A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome Science. 345. DOI: 10.1126/science.1251788  0.92
2013 Zanni V, Eymery A, Coiffet M, Zytnicki M, Luyten I, Quesneville H, Vaury C, Jensen S. Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters. Proceedings of the National Academy of Sciences of the United States of America. 110: 19842-7. PMID 24248389 DOI: 10.1073/Pnas.1313677110  0.92
2013 Pont C, Murat F, Guizard S, Flores R, Foucrier S, Bidet Y, Quraishi UM, Alaux M, Doležel J, Fahima T, Budak H, Keller B, Salvi S, Maccaferri M, Steinbach D, ... ... Quesneville H, et al. Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. The Plant Journal : For Cell and Molecular Biology. 76: 1030-44. PMID 24164652 DOI: 10.1111/Tpj.12366  0.92
2013 Steinbach D, Alaux M, Amselem J, Choisne N, Durand S, Flores R, Keliet AO, Kimmel E, Lapalu N, Luyten I, Michotey C, Mohellibi N, Pommier C, Reboux S, Valdenaire D, ... ... Quesneville H, et al. GnpIS: an information system to integrate genetic and genomic data from plants and fungi. Database : the Journal of Biological Databases and Curation. 2013: bat058. PMID 23959375 DOI: 10.1093/Database/Bat058  0.92
2013 Wicker T, Oberhaensli S, Parlange F, Buchmann JP, Shatalina M, Roffler S, Ben-David R, Doležel J, Šimková H, Schulze-Lefert P, Spanu PD, Bruggmann R, Amselem J, Quesneville H, Ver Loren van Themaat E, et al. The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nature Genetics. 45: 1092-6. PMID 23852167 DOI: 10.1038/Ng.2704  0.92
2013 Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, et al. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature. 499: 209-13. PMID 23760476 DOI: 10.1038/Nature12221  0.92
2013 Slotte T, Hazzouri KM, Ã…gren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, ... ... Quesneville H, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/Ng.2669  0.92
2013 Zytnicki M, Luo Y, Quesneville H. Efficient comparison of sets of intervals with NC-lists. Bioinformatics (Oxford, England). 29: 933-9. PMID 23413438 DOI: 10.1093/Bioinformatics/Btt070  0.92
2012 Ainouche A, Bétermier M, Chandler M, Cordaux R, Cristofari G, Deragon JM, Lesage P, Panaud O, Quesneville H, Vaury C, Vieira C, Vitte C. International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories. Mobile Dna. 3: 17. PMID 23110759 DOI: 10.1186/1759-8753-3-17  0.92
2012 Leroy P, Guilhot N, Sakai H, Bernard A, Choulet F, Theil S, Reboux S, Amano N, Flutre T, Pelegrin C, Ohyanagi H, Seidel M, Giacomoni F, Reichstadt M, Alaux M, ... ... Quesneville H, et al. TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes. Frontiers in Plant Science. 3: 5. PMID 22645565 DOI: 10.3389/Fpls.2012.00005  0.92
2012 Permal E, Flutre T, Quesneville H. Roadmap for annotating transposable elements in eukaryote genomes. Methods in Molecular Biology (Clifton, N.J.). 859: 53-68. PMID 22367865 DOI: 10.1007/978-1-61779-603-6_3  0.92
2012 Flutre T, Permal E, Quesneville H. Transposable element annotation in completely sequenced eukaryote genomes Topics in Current Genetics. 24: 17-39. DOI: 10.1007/978-3-642-31842-9-2  0.92
2011 Zytnicki M, Quesneville H. S-MART, a software toolbox to aid RNA-Seq data analysis. Plos One. 6: e25988. PMID 21998740 DOI: 10.1371/Journal.Pone.0025988  0.92
2011 Stanojcic S, Gimenez S, Permal E, Cousserans F, Quesneville H, Fournier P, d'Alençon E. Correlation of LNCR rasiRNAs expression with heterochromatin formation during development of the holocentric insect Spodoptera frugiperda. Plos One. 6: e24746. PMID 21980354 DOI: 10.1371/Journal.Pone.0024746  0.92
2011 Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, Fournier E, Gout L, Hahn M, Kohn L, Lapalu N, ... ... Quesneville H, et al. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. Plos Genetics. 7: e1002230. PMID 21876677 DOI: 10.1371/Journal.Pgen.1002230  0.92
2011 Field B, Fiston-Lavier AS, Kemen A, Geisler K, Quesneville H, Osbourn AE. Formation of plant metabolic gene clusters within dynamic chromosomal regions. Proceedings of the National Academy of Sciences of the United States of America. 108: 16116-21. PMID 21876149 DOI: 10.1073/Pnas.1109273108  0.92
2011 Ahmed I, Sarazin A, Bowler C, Colot V, Quesneville H. Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis. Nucleic Acids Research. 39: 6919-31. PMID 21586580 DOI: 10.1093/Nar/Gkr324  0.92
2011 Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, ... ... Quesneville H, et al. Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proceedings of the National Academy of Sciences of the United States of America. 108: 9166-71. PMID 21536894 DOI: 10.1073/Pnas.1019315108  0.92
2011 Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, Cozijnsen AJ, Ciuffetti LM, Degrave A, Dilmaghani A, Duret L, ... ... Quesneville H, et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Nature Communications. 2: 202. PMID 21326234 DOI: 10.1038/Ncomms1189  0.92
2011 Flutre T, Duprat E, Feuillet C, Quesneville H. Considering transposable element diversification in de novo annotation approaches. Plos One. 6: e16526. PMID 21304975 DOI: 10.1371/Journal.Pone.0016526  0.92
2011 Cock JM, Collén J, Sterck L, Rouzé P, Scornet D, Anthouard V, Artiguenave F, Aury J, Billiau K, Bonnet E, Bothwell JH, Brillet L, Carre W, Coelho SM, Corre E, ... ... Quesneville H, et al. Nature, nurture and the structure of macroalgal genomes European Journal of Phycology. 46: 39-39. DOI: 10.1080/09670262.2011.613165  0.44
2010 Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, Ver Loren van Themaat E, Brown JK, Butcher SA, Gurr SJ, Lebrun MH, Ridout CJ, Schulze-Lefert P, Talbot NJ, Ahmadinejad N, ... ... Quesneville H, et al. Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science (New York, N.Y.). 330: 1543-6. PMID 21148392 DOI: 10.1126/Science.1194573  0.92
2010 Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, ... ... Quesneville H, et al. The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature. 465: 617-21. PMID 20520714 DOI: 10.1038/Nature09016  0.92
2010 d'Alençon E, Sezutsu H, Legeai F, Permal E, Bernard-Samain S, Gimenez S, Gagneur C, Cousserans F, Shimomura M, Brun-Barale A, Flutre T, Couloux A, East P, Gordon K, Mita K, ... Quesneville H, et al. Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements. Proceedings of the National Academy of Sciences of the United States of America. 107: 7680-5. PMID 20388903 DOI: 10.1073/pnas.0910413107  0.92
2010 Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, Montanini B, Morin E, Noel B, Percudani R, Porcel B, Rubini A, Amicucci A, Amselem J, Anthouard V, ... ... Quesneville H, et al. Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature. 464: 1033-8. PMID 20348908 DOI: 10.1038/Nature08867  0.92
2010 Richards S, Gibbs RA, Gerardo NM, Moran N, Nakabachi A, Stern D, Tagu D, Wilson ACC, Muzny D, Kovar C, Cree A, Chacko J, Chandrabose MN, Dao MD, Dinh HH, ... ... Quesneville H, et al. Genome sequence of the pea aphid Acyrthosiphon pisum Plos Biology. 8. DOI: 10.1371/journal.pbio.1000313  0.92
2008 Cadoret JC, Meisch F, Hassan-Zadeh V, Luyten I, Guillet C, Duret L, Quesneville H, Prioleau MN. Genome-wide studies highlight indirect links between human replication origins and gene regulation. Proceedings of the National Academy of Sciences of the United States of America. 105: 15837-42. PMID 18838675 DOI: 10.1073/Pnas.0805208105  0.92
2008 Berdasco M, Alcázar R, García-Ortiz MV, Ballestar E, Fernández AF, Roldán-Arjona T, Tiburcio AF, Altabella T, Buisine N, Quesneville H, Baudry A, Lepiniec L, Alaminos M, Rodríguez R, Lloyd A, et al. Promoter DNA hypermethylation and gene repression in undifferentiated Arabidopsis cells. Plos One. 3: e3306. PMID 18827894 DOI: 10.1371/Journal.Pone.0003306  0.92
2008 Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, ... ... Quesneville H, et al. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26: 909-15. PMID 18660804 DOI: 10.1038/Nbt.1482  0.92
2008 Buisine N, Quesneville H, Colot V. Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets. Genomics. 91: 467-75. PMID 18343092 DOI: 10.1016/J.Ygeno.2008.01.005  0.92
2008 Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buée M, ... ... Quesneville H, et al. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature. 452: 88-92. PMID 18322534 DOI: 10.1038/Nature06556  0.92
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Quesneville H, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.6
2007 Bergman CM, Quesneville H. Discovering and detecting transposable elements in genome sequences. Briefings in Bioinformatics. 8: 382-92. PMID 17932080 DOI: 10.1093/Bib/Bbm048  0.92
2007 Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, Adam G, Antoniw J, Baldwin T, Calvo S, Chang YL, ... ... Quesneville H, et al. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science (New York, N.Y.). 317: 1400-2. PMID 17823352 DOI: 10.1126/Science.1143708  0.92
2007 Fiston-Lavier AS, Anxolabehere D, Quesneville H. A model of segmental duplication formation in Drosophila melanogaster. Genome Research. 17: 1458-70. PMID 17726166 DOI: 10.1101/Gr.6208307  0.92
2007 Vitte C, Panaud O, Quesneville H. LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss. Bmc Genomics. 8: 218. PMID 17617907 DOI: 10.1186/1471-2164-8-218  0.92
2007 Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, ... ... Quesneville H, et al. Genome sequence of Aedes aegypti, a major arbovirus vector. Science (New York, N.Y.). 316: 1718-23. PMID 17510324 DOI: 10.1126/Science.1138878  0.92
2007 Vitte C, Chaparro C, Quesneville H, Panaud O. Spip and Squiq, two novel rice non-autonomous LTR retro-element families related to RIRE3 and RIRE8 Plant Science. 172: 8-19. DOI: 10.1016/j.plantsci.2006.07.008  0.92
2006 Bergman CM, Quesneville H, Anxolabéhère D, Ashburner M. Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. Genome Biology. 7: R112. PMID 17134480 DOI: 10.1186/Gb-2006-7-11-R112  0.92
2006 Quesneville H, Nouaud D, Anxolabéhère D. P elements and MITE relatives in the whole genome sequence of Anopheles gambiae. Bmc Genomics. 7: 214. PMID 16919158 DOI: 10.1186/1471-2164-7-214  0.92
2006 Drouaud J, Camilleri C, Bourguignon PY, Canaguier A, Bérard A, Vezon D, Giancola S, Brunel D, Colot V, Prum B, Quesneville H, Mézard C. Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots". Genome Research. 16: 106-14. PMID 16344568 DOI: 10.1101/Gr.4319006  0.92
2005 Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D. Combined evidence annotation of transposable elements in genome sequences. Plos Computational Biology. 1: 166-75. PMID 16110336 DOI: 10.1371/Journal.Pcbi.0010022  0.92
2005 Eiglmeier K, Wincker P, Cattolico L, Anthouard V, Holm I, Eckenberg R, Quesneville H, Jaillon O, Collins FH, Weissenbach J, Brey PT, Roth CW. Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation. Insect Biochemistry and Molecular Biology. 35: 799-814. PMID 15944077 DOI: 10.1016/J.Ibmb.2005.02.020  0.92
2005 Tzeng JY. Evolutionary-based grouping of haplotypes in association analysis. Genetic Epidemiology. 28: 220-31. PMID 15726584 DOI: 10.1002/Gepi.20063  0.92
2005 Quesneville H, Nouaud D, Anxolabehere D. Recurrent recruitment of the THAP DNA-binding domain and molecular domestication of the P-transposable element. Molecular Biology and Evolution. 22: 741-6. PMID 15574804 DOI: 10.1093/Molbev/Msi064  0.92
2004 Andrieu O, Fiston AS, Anxolabéhère D, Quesneville H. Detection of transposable elements by their compositional bias. Bmc Bioinformatics. 5: 94. PMID 15251040 DOI: 10.1186/1471-2105-5-94  0.92
2003 Quesneville H, Nouaud D, Anxolabéhère D. Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes. Journal of Molecular Evolution. 57: S50-9. PMID 15008403 DOI: 10.1007/S00239-003-0007-2  0.92
2003 Dizier MH, Quesneville H, Besse-Schmittler C, Guilloud-Bataille M, Selinger-Leneman H, Clerget-Darpoux F, Demenais F. Indication of linkage and genetic heterogeneity for asthma and atopy on chromosomes 8p and 12q in 107 French EGEA families. European Journal of Human Genetics : Ejhg. 11: 590-6. PMID 12891379 DOI: 10.1038/sj.ejhg.5201014  0.92
2003 Reiss D, Quesneville H, Nouaud D, Andrieu O, Anxolabehere D. Hoppel, a P-like element without introns: a P-element ancestral structure or a retrotranscription derivative? Molecular Biology and Evolution. 20: 869-79. PMID 12717001 DOI: 10.1093/Molbev/Msg090  0.92
2003 Nouaud D, Quesneville H, Anxolabéhère D. Recurrent exon shuffling between distant P-element families. Molecular Biology and Evolution. 20: 190-9. PMID 12598685 DOI: 10.1093/Molbev/Msg036  0.92
2001 Quesneville H, Anxolabéhère D. Genetic algorithm-based model of evolutionary dynamics of class II transposable elements. Journal of Theoretical Biology. 213: 21-30. PMID 11708852 DOI: 10.1006/Jtbi.2001.2401  0.92
2000 Bourgain C, Genin E, Quesneville H, Clerget-Darpoux F. Search for multifactorial disease susceptibility genes in founder populations. Annals of Human Genetics. 64: 255-65. PMID 11409410 DOI: 10.1017/S0003480000008113  0.92
2000 Dizier MH, Quesneville H, Prum B, Selinger-Leneman H, Clerget-Darpoux F. The triangle test statistic (TTS): a test of genetic homogeneity using departure from the triangle constraints in IBD distribution among affected sib-pairs. Annals of Human Genetics. 64: 433-42. PMID 11281281 DOI: 10.1017/S0003480000008319  0.92
1999 Quesneville H, Dizier MH, Clerget-Darpoux F. Departure from the triangle constraints in discordant sib pairs: a test for genetic heterogeneity. Genetic Epidemiology. 17: S685-9. PMID 10597514  0.92
1999 Génin E, Guyon F, Margaritte-Jeannin P, Quesneville H, Clerget-Darpoux F. Detection and modeling of disease susceptibility locus effects: how much can be learned from contrast of populations? Genetic Epidemiology. 17: S569-74. PMID 10597494  0.92
1998 Quesneville H, Anxolabéhère D. Dynamics of transposable elements in metapopulations: a model of P element invasion in Drosophila. Theoretical Population Biology. 54: 175-93. PMID 9733658 DOI: 10.1006/Tpbi.1997.1353  0.92
1998 Génin E, Quesneville H, Clerget-Darpoux F. On the probability of identity states in permutable populations: reply to Cannings. American Journal of Human Genetics. 62: 726-7. PMID 9497268 DOI: 10.1086/301771  0.92
1997 Quesneville H, Anxolabéhère D. A simulation of P element horizontal transfer in Drosophila. Genetica. 100: 295-307. PMID 9440282 DOI: 10.1023/A:1018362402815  0.92
1997 Quesneville H, Anxolabehere D. GENOOM: A simulation package for genetic object-oriented modelling Annals of Human Genetics. 61: 543.  0.92
1994 Coen D, Lemaitre B, Delattre M, Quesneville H, Ronsseray S, Simonelig M, Higuet D, Lehmann M, Montchamp C, Nouaud D. Drosophila P element: transposition, regulation and evolution. Genetica. 93: 61-78. PMID 7813918 DOI: 10.1007/BF01435240  0.92
1994 Quesneville H, Katz M, Anxolabehere D. Can transposable element copy number distribution parameters be estimates from natural populations of Drosophila melanogaster? Journal of Evolutionary Biology. 7: 13-28. DOI: 10.1046/J.1420-9101.1994.7010013.X  0.92
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