Dmitri Petrov, PhD - Publications

Biology Stanford University, Palo Alto, CA 

136 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lee MC, Cai H, Murray CW, Li C, Shue YT, Andrejka L, He AL, Holzem AME, Drainas AP, Ko JH, Coles GL, Kong C, Zhu S, Zhu C, Wang J, ... ... Petrov DA, et al. A multiplexed in vivo approach to identify driver genes in small cell lung cancer. Cell Reports. 42: 111990. PMID 36640300 DOI: 10.1016/j.celrep.2023.111990  0.449
2022 Armstrong EE, Campana MG, Solari KA, Morgan SR, Ryder OA, Naude VN, Samelius G, Sharma K, Hadly EA, Petrov DA. Genome Report: Chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris). G3 (Bethesda, Md.). PMID 36250809 DOI: 10.1093/g3journal/jkac277  0.806
2022 Tilk S, Tkachenko S, Curtis C, Petrov DA, McFarland CD. Most cancers carry a substantial deleterious load due to Hill-Robertson interference. Elife. 11. PMID 36047771 DOI: 10.7554/eLife.67790  0.782
2022 Yousefi M, Boross G, Weiss C, Murray CW, Hebert JD, Cai H, Ashkin EL, Karmakar S, Andrejka L, Chen L, Wang M, Tsai MK, Lin WY, Li C, Yakhchalian P, ... ... Petrov DA, et al. Combinatorial Inactivation of Tumor Suppressors Efficiently Initiates Lung Adenocarcinoma with Therapeutic Vulnerabilities. Cancer Research. 82: 1589-1602. PMID 35425962 DOI: 10.1158/0008-5472.CAN-22-0059  0.645
2022 Kim BY, Wang JR, Miller DE, Barmina O, Delaney E, Thompson A, Comeault AA, Peede D, D'Agostino ERR, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong E, Zych M, ... ... Petrov DA, et al. Correction: Highly contiguous assemblies of 101 drosophilid genomes. Elife. 11. PMID 35302486 DOI: 10.7554/eLife.78579  0.755
2022 Rudman SM, Greenblum SI, Rajpurohit S, Betancourt NJ, Hanna J, Tilk S, Yokoyama T, Petrov DA, Schmidt P. Direct observation of adaptive tracking on ecological time scales in . Science (New York, N.Y.). 375: eabj7484. PMID 35298245 DOI: 10.1126/science.abj7484  0.82
2022 Foggetti G, Li C, Cai H, Petrov DA, Winslow MM, Politi K. Tumor suppressor pathways shape EGFR-driven lung tumor progression and response to treatment. Molecular & Cellular Oncology. 9: 1994328. PMID 35252550 DOI: 10.1080/23723556.2021.1994328  0.65
2021 Cerca J, Armstrong EE, Vizueta J, Fernández R, Dimitrov D, Petersen B, Prost S, Rozas J, Petrov D, Gillespie RG. The Tetragnatha kauaiensis genome sheds light on the origins of genomic novelty in spiders. Genome Biology and Evolution. PMID 34849853 DOI: 10.1093/gbe/evab262  0.824
2021 Suvorov A, Kim BY, Wang J, Armstrong EE, Peede D, D'Agostino ERR, Price DK, Waddell P, Lang M, Courtier-Orgogozo V, David JR, Petrov D, Matute DR, Schrider DR, Comeault AA. Widespread introgression across a phylogeny of 155 Drosophila genomes. Current Biology : Cb. PMID 34788634 DOI: 10.1016/j.cub.2021.10.052  0.777
2021 Kapun M, Nunez JCB, Bogaerts-Márquez M, Murga-Moreno J, Paris M, Outten J, Coronado-Zamora M, Tern C, Rota-Stabelli O, García Guerreiro MP, Casillas S, Orengo DJ, Puerma E, Kankare M, Ometto L, ... ... Petrov D, et al. Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource. Molecular Biology and Evolution. PMID 34469576 DOI: 10.1093/molbev/msab259  0.831
2021 Kim BY, Wang J, Miller DE, Barmina O, Delaney EK, Thompson A, Comeault AA, Peede D, D'Agostino ER, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong E, Zych M, ... ... Petrov DA, et al. Highly contiguous assemblies of 101 drosophilid genomes. Elife. 10. PMID 34279216 DOI: 10.7554/eLife.66405  0.763
2021 Li C, Lin WY, Rizvi H, Cai H, McFarland CD, Rogers ZN, Yousefi M, Winters IP, Rudin CM, Petrov DA, Winslow MM. Quantitative in vivo analyses reveal a complex pharmacogenomic landscape in lung adenocarcinoma. Cancer Research. PMID 34215621 DOI: 10.1158/0008-5472.CAN-21-0716  0.77
2021 Machado HE, Bergland A, Taylor RW, Tilk S, Behrman E, Dyer K, Fabian DK, Flatt T, González J, Karasov TL, Kim BY, Kozeretska I, Lazzaro BP, Merritt T, Pool JE, ... ... Petrov DA, et al. Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in Drosophila. Elife. 10. PMID 34155971 DOI: 10.7554/eLife.67577  0.815
2021 Bergelson J, Kreitman M, Petrov DA, Sanchez A, Tikhonov M. Functional biology in its natural context: A search for emergent simplicity. Elife. 10. PMID 34096867 DOI: 10.7554/eLife.67646  0.523
2021 Weiss CV, Harshman L, Inoue F, Fraser HB, Petrov DA, Ahituv N, Gokhman D. The -regulatory effects of modern human-specific variants. Elife. 10. PMID 33885362 DOI: 10.7554/eLife.63713  0.798
2021 Chaikovsky AC, Li C, Jeng EE, Loebell S, Lee MC, Murray CW, Cheng R, Demeter J, Swaney DL, Chen SH, Newton BW, Johnson JR, Drainas AP, Shue YT, Seoane JA, ... ... Petrov DA, et al. The AMBRA1 E3 ligase adaptor regulates the stability of cyclin D. Nature. PMID 33854239 DOI: 10.1038/s41586-021-03474-7  0.623
2021 Gokhman D, Agoglia RM, Kinnebrew M, Gordon W, Sun D, Bajpai VK, Naqvi S, Chen C, Chan A, Chen C, Petrov DA, Ahituv N, Zhang H, Mishina Y, Wysocka J, et al. Publisher Correction: Human-chimpanzee fused cells reveal cis-regulatory divergence underlying skeletal evolution. Nature Genetics. PMID 33762754 DOI: 10.1038/s41588-021-00849-4  0.769
2021 Gokhman D, Agoglia RM, Kinnebrew M, Gordon W, Sun D, Bajpai VK, Naqvi S, Chen C, Chan A, Chen C, Petrov DA, Ahituv N, Zhang H, Mishina Y, Wysocka J, et al. Human-chimpanzee fused cells reveal cis-regulatory divergence underlying skeletal evolution. Nature Genetics. PMID 33731941 DOI: 10.1038/s41588-021-00804-3  0.782
2021 Foggetti G, Li C, Cai H, Hellyer JA, Lin WY, Ayeni D, Hastings K, Choi J, Wurtz A, Andrejka L, Maghini DG, Rashleigh N, Levy S, Homer R, Gettinger SN, ... ... Petrov DA, et al. Genetic determinants of EGFR-Driven Lung Cancer Growth and Therapeutic Response In Vivo. Cancer Discovery. PMID 33707235 DOI: 10.1158/2159-8290.CD-20-1385  0.643
2021 Garud NR, Messer PW, Petrov DA. Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data. Plos Genetics. 17: e1009373. PMID 33635910 DOI: 10.1371/journal.pgen.1009373  0.766
2021 Cai H, Chew SK, Li C, Tsai MK, Andrejka L, Murray CW, Hughes NW, Shuldiner EG, Ashkin EL, Tang R, Hung KL, Chen LC, Lee SYC, Yousefi M, Lin WY, ... ... Petrov DA, et al. A functional taxonomy of tumor suppression in oncogenic KRAS-driven lung cancer. Cancer Discovery. PMID 33608386 DOI: 10.1158/2159-8290.CD-20-1325  0.783
2021 Armstrong EE, Khan A, Taylor RW, Gouy A, Greenbaum G, Thiéry A, Kang JTL, Redondo SA, Prost S, Barsh G, Kaelin C, Phalke S, Chugani A, Gilbert M, Miquelle D, ... ... Petrov D, et al. Recent evolutionary history of tigers highlights contrasting roles of genetic drift and selection. Molecular Biology and Evolution. PMID 33592092 DOI: 10.1093/molbev/msab032  0.829
2021 Zhu X, Zhou B, Pattni R, Gleason K, Tan C, Kalinowski A, Sloan S, Fiston-Lavier AS, Mariani J, Petrov D, Barres BA, Duncan L, Abyzov A, Vogel H, et al. Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia. Nature Neuroscience. PMID 33432196 DOI: 10.1038/s41593-020-00767-4  0.725
2020 Kinsler G, Geiler-Samerotte K, Petrov DA. Fitness variation across subtle environmental perturbations reveals local modularity and global pleiotropy of adaptation. Elife. 9. PMID 33263280 DOI: 10.7554/eLife.61271  0.795
2020 Harpak A, Garud N, Rosenberg NA, Petrov DA, Combs M, Pennings PS, Munshi-South J. Genetic Adaptation in New York City Rats. Genome Biology and Evolution. PMID 33211096 DOI: 10.1093/gbe/evaa247  0.744
2020 Enard D, Petrov DA. Ancient RNA virus epidemics through the lens of recent adaptation in human genomes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190575. PMID 33012231 DOI: 10.1098/rstb.2019.0575  0.316
2020 Armstrong EE, Taylor RW, Miller DE, Kaelin CB, Barsh GS, Hadly EA, Petrov D. Long live the king: chromosome-level assembly of the lion (Panthera leo) using linked-read, Hi-C, and long-read data. Bmc Biology. 18: 3. PMID 31915011 DOI: 10.1186/S12915-019-0734-5  0.797
2019 Tilk S, Bergland A, Goodman A, Schmidt P, Petrov D, Greenblum S. Accurate Allele Frequencies from Ultra-low Coverage Pool-Seq Samples in Evolve-and-Resequence Experiments. G3 (Bethesda, Md.). PMID 31636085 DOI: 10.1534/G3.119.400755  0.796
2019 Rudman SM, Greenblum S, Hughes RC, Rajpurohit S, Kiratli O, Lowder DB, Lemmon SG, Petrov DA, Chaston JM, Schmidt P. Microbiome composition shapes rapid genomic adaptation of . Proceedings of the National Academy of Sciences of the United States of America. PMID 31527278 DOI: 10.1073/Pnas.1907787116  0.824
2019 Natesh M, Taylor RW, Truelove NK, Hadly EA, Palumbi SR, Petrov DA, Ramakrishnan U. Empowering conservation practice with efficient and economical genotyping from poor quality samples. Methods in Ecology and Evolution. 10: 853-859. PMID 31511786 DOI: 10.1111/2041-210X.13173  0.714
2019 Rech GE, Bogaerts-Márquez M, Barrón MG, Merenciano M, Villanueva-Cañas JL, Horváth V, Fiston-Lavier AS, Luyten I, Venkataram S, Quesneville H, Petrov DA, González J. Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. Plos Genetics. 15: e1007900. PMID 30753202 DOI: 10.1371/Journal.Pgen.1007900  0.819
2018 Combs PA, Krupp JJ, Khosla NM, Bua D, Petrov DA, Levine JD, Fraser HB. Tissue-Specific cis-Regulatory Divergence Implicates eloF in Inhibiting Interspecies Mating in Drosophila. Current Biology : Cb. 28: 3969-3975.e3. PMID 30503619 DOI: 10.1016/J.Cub.2018.10.036  0.594
2018 Armstrong EE, Taylor RW, Prost S, Blinston P, van der Meer E, Madzikanda H, Mufute O, Mandisodza-Chikerema R, Stuelpnagel J, Sillero-Zubiri C, Petrov D. Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads. Gigascience. PMID 30346553 DOI: 10.1093/Gigascience/Giy124  0.815
2018 Rajpurohit S, Gefen E, Bergland AO, Petrov DA, Gibbs AG, Schmidt P. Spatiotemporal dynamics and genome-wide association analysis of desiccation tolerance in Drosophila melanogaster. Molecular Ecology. PMID 30051644 DOI: 10.1111/Mec.14814  0.739
2018 Rogers ZN, McFarland CD, Winters IP, Seoane JA, Brady JJ, Yoon S, Curtis C, Petrov DA, Winslow MM. Mapping the in vivo fitness landscape of lung adenocarcinoma tumor suppression in mice. Nature Genetics. PMID 29610476 DOI: 10.1038/S41588-018-0083-2  0.794
2018 Li Y, Venkataram S, Agarwala A, Dunn B, Petrov DA, Sherlock G, Fisher DS. Hidden Complexity of Yeast Adaptation under Simple Evolutionary Conditions. Current Biology : Cb. PMID 29429618 DOI: 10.1016/J.Cub.2018.01.009  0.788
2018 Behrman EL, Howick VM, Kapun M, Staubach F, Bergland AO, Petrov DA, Lazzaro BP, Schmidt PS. Rapid seasonal evolution in innate immunity of wild Drosophila melanogaster. Proceedings. Biological Sciences. 285. PMID 29321302 DOI: 10.1098/Rspb.2017.2599  0.713
2018 Winters IP, Rogers ZN, McFarland CD, Lalgudi PV, Chiou S, Kay MA, Petrov D, Winslow MM. Abstract IA03: Functional lung cancer genomics through in vivo genome editing Clinical Cancer Research. 24. DOI: 10.1158/1557-3265.Aacriaslc18-Ia03  0.814
2018 McCoy R, Demko Z, Ryan A, Banjevic M, Hill M, Sigurjonsson S, Rabinowitz M, Fraser H, Petrov D. Common variants associated with mitotic-origin of aneuploidy in human embryos Reproductive Biomedicine Online. 36: e1. DOI: 10.1016/J.Rbmo.2017.10.002  0.61
2017 Winters IP, Chiou SH, Paulk NK, McFarland CD, Lalgudi PV, Ma RK, Lisowski L, Connolly AJ, Petrov DA, Kay MA, Winslow MM. Multiplexed in vivo homology-directed repair and tumor barcoding enables parallel quantification of Kras variant oncogenicity. Nature Communications. 8: 2053. PMID 29233960 DOI: 10.1038/S41467-017-01519-Y  0.82
2017 Wittmann MJ, Bergland AO, Feldman MW, Schmidt PS, Petrov DA. Seasonally fluctuating selection can maintain polymorphism at many loci via segregation lift. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087300 DOI: 10.1073/Pnas.1702994114  0.725
2017 Assaf ZJ, Park J, Tilk S, Siegal ML, Petrov D. Deep sequencing of natural and experimental populations of Drosophila melanogaster reveals biases in the spectrum of new mutations. Genome Research. PMID 29079675 DOI: 10.1101/gr.219956.116  0.681
2017 Ebel ER, Telis N, Venkataram S, Petrov DA, Enard D. High rate of adaptation of mammalian proteins that interact with Plasmodium and related parasites. Plos Genetics. 13: e1007023. PMID 28957326 DOI: 10.1371/Journal.Pgen.1007023  0.777
2017 Rogers ZN, McFarland CD, Winters IP, Naranjo S, Chuang CH, Petrov D, Winslow MM. A quantitative and multiplexed approach to uncover the fitness landscape of tumor suppression in vivo. Nature Methods. PMID 28530655 DOI: 10.1038/Nmeth.4297  0.795
2017 Wilson BA, Pennings PS, Petrov DA. Soft Selective Sweeps in Evolutionary Rescue. Genetics. PMID 28213477 DOI: 10.1534/genetics.116.191478  0.31
2016 Rajpurohit S, Hanus R, Vrkoslav V, Behrman EL, Bergland AO, Petrov D, Cvačka J, Schmidt PS. Adaptive dynamics of cuticular hydrocarbons in Drosophila. Journal of Evolutionary Biology. PMID 27718537 DOI: 10.1111/Jeb.12988  0.735
2016 Venkataram S, Dunn B, Li Y, Agarwala A, Chang J, Ebel ER, Geiler-Samerotte K, Hérissant L, Blundell JR, Levy SF, Fisher DS, Sherlock G, Petrov DA. Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast. Cell. PMID 27594428 DOI: 10.1016/J.Cell.2016.08.002  0.795
2016 Sellis D, Kvitek DJ, Dunn B, Sherlock G, Petrov DA. Empirical Evidence for Heterozygote Advantage in Adapting Diploid Populations of Saccharomyces cerevisiae. Genetics. PMID 27194750 DOI: 10.1534/Genetics.115.185165  0.799
2016 Garud NR, Petrov DA. Elevation of Linkage Disequilibrium Above Neutral Expectations in Ancestral and Derived Populations of Drosophila melanogaster. Genetics. PMID 27098909 DOI: 10.1534/Genetics.115.184002  0.771
2015 Zhao X, Bergland AO, Behrman EL, Gregory BD, Petrov DA, Schmidt PS. Global transcriptional profiling of diapause and climatic adaptation in Drosophila melanogaster. Molecular Biology and Evolution. PMID 26568616 DOI: 10.1093/Molbev/Msv263  0.721
2015 Bergland AO, Tobler R, González J, Schmidt P, Petrov D. Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster. Molecular Ecology. PMID 26547394 DOI: 10.1111/Mec.13455  0.764
2015 Machado HE, Bergland AO, O'Brien KR, Behrman EL, Schmidt PS, Petrov DA. Comparative population genomics of latitudinal variation in D. simulans and D. melanogaster. Molecular Ecology. PMID 26523848 DOI: 10.1111/Mec.13446  0.725
2015 Glémin S, Arndt PF, Messer PW, Petrov D, Galtier N, Duret L. Quantification of GC-biased gene conversion in the human genome. Genome Research. PMID 25995268 DOI: 10.1101/Gr.185488.114  0.687
2015 McCoy RC, Demko Z, Ryan A, Banjevic M, Hill M, Sigurjonsson S, Rabinowitz M, Fraser HB, Petrov DA. Common variants spanning PLK4 are associated with mitotic-origin aneuploidy in human embryos. Science (New York, N.Y.). 348: 235-8. PMID 25859044 DOI: 10.1097/Ogx.0000000000000223  0.62
2015 Levy SF, Blundell JR, Venkataram S, Petrov DA, Fisher DS, Sherlock G. Quantitative evolutionary dynamics using high-resolution lineage tracking. Nature. 519: 181-6. PMID 25731169 DOI: 10.1038/Nature14279  0.812
2015 Garud NR, Messer PW, Buzbas EO, Petrov DA. Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps. Plos Genetics. 11: e1005004. PMID 25706129 DOI: 10.1371/Journal.Pgen.1005004  0.789
2015 Fiston-Lavier AS, Barrón MG, Petrov DA, González J. T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data. Nucleic Acids Research. 43: e22. PMID 25510498 DOI: 10.1093/Nar/Gku1250  0.807
2014 Bergland AO, Behrman EL, O'Brien KR, Schmidt PS, Petrov DA. Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila. Plos Genetics. 10: e1004775. PMID 25375361 DOI: 10.1371/Journal.Pgen.1004775  0.741
2014 Barrón MG, Fiston-Lavier AS, Petrov DA, González J. Population genomics of transposable elements in Drosophila. Annual Review of Genetics. 48: 561-81. PMID 25292358 DOI: 10.1146/Annurev-Genet-120213-092359  0.827
2014 Zhu YO, Siegal ML, Hall DW, Petrov DA. Reply to Chen and Zhang: On interpreting genome-wide trends from yeast mutation accumulation data. Proceedings of the National Academy of Sciences of the United States of America. 111: E4063. PMID 25217565 DOI: 10.1073/Pnas.1413861111  0.664
2014 McCoy RC, Taylor RW, Blauwkamp TA, Kelley JL, Kertesz M, Pushkarev D, Petrov DA, Fiston-Lavier AS. Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements. Plos One. 9: e106689. PMID 25188499 DOI: 10.1371/Journal.Pone.0106689  0.807
2014 Zhu YO, Siegal ML, Hall DW, Petrov DA. Precise estimates of mutation rate and spectrum in yeast. Proceedings of the National Academy of Sciences of the United States of America. 111: E2310-8. PMID 24847077 DOI: 10.1073/Pnas.1323011111  0.661
2014 Lawrie DS, Petrov DA. Comparative population genomics: power and principles for the inference of functionality. Trends in Genetics : Tig. 30: 133-9. PMID 24656563 DOI: 10.1016/j.tig.2014.02.002  0.341
2014 Enard D, Messer PW, Petrov DA. Genome-wide signals of positive selection in human evolution. Genome Research. 24: 885-95. PMID 24619126 DOI: 10.1101/gr.164822.113  0.305
2014 McCoy RC, Garud NR, Kelley JL, Boggs CL, Petrov DA. Genomic inference accurately predicts the timing and severity of a recent bottleneck in a nonmodel insect population. Molecular Ecology. 23: 136-50. PMID 24237665 DOI: 10.1111/Mec.12591  0.782
2013 Messer PW, Petrov DA. Population genomics of rapid adaptation by soft selective sweeps. Trends in Ecology & Evolution. 28: 659-69. PMID 24075201 DOI: 10.1016/j.tree.2013.08.003  0.369
2013 Messer PW, Petrov DA. Frequent adaptation and the McDonald-Kreitman test. Proceedings of the National Academy of Sciences of the United States of America. 110: 8615-20. PMID 23650353 DOI: 10.1073/pnas.1220835110  0.329
2013 Losos JB, Arnold SJ, Bejerano G, Brodie ED, Hibbett D, Hoekstra HE, Mindell DP, Monteiro A, Moritz C, Orr HA, Petrov DA, Renner SS, Ricklefs RE, Soltis PS, Turner TL. Evolutionary biology for the 21st century. Plos Biology. 11: e1001466. PMID 23319892 DOI: 10.1371/Journal.Pbio.1001466  0.301
2012 Feder AF, Petrov DA, Bergland AO. LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data. Plos One. 7: e48588. PMID 23152785 DOI: 10.1371/Journal.Pone.0048588  0.695
2012 Staubach F, Lorenc A, Messer PW, Tang K, Petrov DA, Tautz D. Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus). Plos Genetics. 8: e1002891. PMID 22956910 DOI: 10.1371/journal.pgen.1002891  0.377
2012 Zhu Y, Bergland AO, González J, Petrov DA. Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster. Plos One. 7: e41901. PMID 22848651 DOI: 10.1371/Journal.Pone.0041901  0.738
2012 González J, Petrov DA. Evolution of genome content: population dynamics of transposable elements in flies and humans. Methods in Molecular Biology (Clifton, N.J.). 855: 361-83. PMID 22407716 DOI: 10.1007/978-1-61779-582-4_13  0.355
2011 Sellis D, Callahan BJ, Petrov DA, Messer PW. Heterozygote advantage as a natural consequence of adaptation in diploids. Proceedings of the National Academy of Sciences of the United States of America. 108: 20666-71. PMID 22143780 DOI: 10.1073/Pnas.1114573108  0.801
2011 Lawrie DS, Petrov DA, Messer PW. Faster than neutral evolution of constrained sequences: the complex interplay of mutational biases and weak selection. Genome Biology and Evolution. 3: 383-95. PMID 21498884 DOI: 10.1093/gbe/evr032  0.345
2011 Markova-Raina P, Petrov D. High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes. Genome Research. 21: 863-74. PMID 21393387 DOI: 10.1101/Gr.115949.110  0.422
2011 Fiston-Lavier AS, Carrigan M, Petrov DA, González J. T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data. Nucleic Acids Research. 39: e36. PMID 21177644 DOI: 10.1093/Nar/Gkq1291  0.763
2011 Petrov DA, Fiston-Lavier AS, Lipatov M, Lenkov K, González J. Population genomics of transposable elements in Drosophila melanogaster. Molecular Biology and Evolution. 28: 1633-44. PMID 21172826 DOI: 10.1093/Molbev/Msq337  0.773
2010 Cai JJ, Borenstein E, Petrov DA. Broker genes in human disease. Genome Biology and Evolution. 2: 815-25. PMID 20937604 DOI: 10.1093/Gbe/Evq064  0.6
2010 Hershberg R, Petrov DA. Evidence that mutation is universally biased towards AT in bacteria. Plos Genetics. 6: e1001115. PMID 20838599 DOI: 10.1371/journal.pgen.1001115  0.318
2010 Karasov T, Messer PW, Petrov DA. Evidence that adaptation in Drosophila is not limited by mutation at single sites. Plos Genetics. 6: e1000924. PMID 20585551 DOI: 10.1371/journal.pgen.1000924  0.303
2010 Fiston-Lavier AS, Singh ND, Lipatov M, Petrov DA. Drosophila melanogaster recombination rate calculator. Gene. 463: 18-20. PMID 20452408 DOI: 10.1016/J.Gene.2010.04.015  0.803
2010 González J, Karasov TL, Messer PW, Petrov DA. Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila. Plos Genetics. 6: e1000905. PMID 20386746 DOI: 10.1371/journal.pgen.1000905  0.335
2010 Chan YF, Marks ME, Jones FC, Villarreal G, Shapiro MD, Brady SD, Southwick AM, Absher DM, Grimwood J, Schmutz J, Myers RM, Petrov D, Jónsson B, Schluter D, Bell MA, et al. Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science (New York, N.Y.). 327: 302-5. PMID 20007865 DOI: 10.1126/Science.1182213  0.404
2009 Cai JJ, Borenstein E, Chen R, Petrov DA. Similarly strong purifying selection acts on human disease genes of all evolutionary ages. Genome Biology and Evolution. 1: 131-44. PMID 20333184 DOI: 10.1093/Gbe/Evp013  0.589
2009 Krane DE, Bahn V, Balding D, Barlow B, Cash H, Desportes BL, D'Eustachio P, Devlin K, Doom TE, Dror I, Ford S, Funk C, Gilder J, Hampikian G, Inman K, ... ... Petrov DA, et al. Time for DNA disclosure. Science (New York, N.Y.). 326: 1631-2. PMID 20019271 DOI: 10.1126/Science.326.5960.1631  0.431
2009 González J, Petrov D. Genetics. MITEs--the ultimate parasites. Science (New York, N.Y.). 325: 1352-3. PMID 19745141 DOI: 10.1126/Science.1179556  0.461
2009 González J, Petrov DA. The adaptive role of transposable elements in the Drosophila genome. Gene. 448: 124-33. PMID 19555747 DOI: 10.1016/j.gene.2009.06.008  0.386
2009 Sella G, Petrov DA, Przeworski M, Andolfatto P. Pervasive natural selection in the Drosophila genome? Plos Genetics. 5: e1000495. PMID 19503600 DOI: 10.1371/Journal.Pgen.1000495  0.393
2009 Li VC, Davis JC, Lenkov K, Bolival B, Fuller MT, Petrov DA. Molecular evolution of the testis TAFs of Drosophila. Molecular Biology and Evolution. 26: 1103-16. PMID 19244474 DOI: 10.1093/Molbev/Msp030  0.54
2008 González J, Lenkov K, Lipatov M, Macpherson JM, Petrov DA. High rate of recent transposable element-induced adaptation in Drosophila melanogaster. Plos Biology. 6: e251. PMID 18942889 DOI: 10.1371/journal.pbio.0060251  0.363
2008 Dean EJ, Davis JC, Davis RW, Petrov DA. Pervasive and persistent redundancy among duplicated genes in yeast. Plos Genetics. 4: e1000113. PMID 18604285 DOI: 10.1371/Journal.Pgen.1000113  0.537
2008 Macpherson JM, González J, Witten DM, Davis JC, Rosenberg NA, Hirsh AE, Petrov DA. Nonadaptive explanations for signatures of partial selective sweeps in Drosophila. Molecular Biology and Evolution. 25: 1025-42. PMID 18199829 DOI: 10.1093/Molbev/Msn007  0.604
2007 Singh ND, Petrov DA. Evolution of gene function on the X chromosome versus the autosomes. Genome Dynamics. 3: 101-18. PMID 18753787 DOI: 10.1159/000107606  0.599
2007 Macpherson JM, Sella G, Davis JC, Petrov DA. Genomewide spatial correspondence between nonsynonymous divergence and neutral polymorphism reveals extensive adaptation in Drosophila. Genetics. 177: 2083-99. PMID 18073425 DOI: 10.1534/Genetics.107.080226  0.578
2007 Singh ND, Macpherson JM, Jensen JD, Petrov DA. Similar levels of X-linked and autosomal nucleotide variation in African and non-African populations of Drosophila melanogaster. Bmc Evolutionary Biology. 7: 202. PMID 17961244 DOI: 10.1186/1471-2148-7-202  0.605
2007 Oliver MJ, Petrov D, Ackerly D, Falkowski P, Schofield OM. The mode and tempo of genome size evolution in eukaryotes. Genome Research. 17: 594-601. PMID 17420184 DOI: 10.1101/Gr.6096207  0.438
2006 Singh ND, Arndt PF, Petrov DA. Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences. Bmc Biology. 4: 37. PMID 17049096 DOI: 10.1186/1741-7007-4-37  0.609
2006 Boissinot S, Davis J, Entezam A, Petrov D, Furano AV. Fitness cost of LINE-1 (L1) activity in humans. Proceedings of the National Academy of Sciences of the United States of America. 103: 9590-4. PMID 16766655 DOI: 10.1073/Pnas.0603334103  0.526
2005 Lipatov M, Lenkov K, Petrov DA, Bergman CM. Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome. Bmc Biology. 3: 24. PMID 16283942 DOI: 10.1186/1741-7007-3-24  0.639
2005 Davis JC, Petrov DA. Do disparate mechanisms of duplication add similar genes to the genome? Trends in Genetics : Tig. 21: 548-51. PMID 16098632 DOI: 10.1016/J.Tig.2005.07.008  0.54
2005 Singh ND, Davis JC, Petrov DA. Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome. Journal of Molecular Evolution. 61: 315-24. PMID 16044248 DOI: 10.1007/S00239-004-0287-1  0.691
2005 Singh ND, Davis JC, Petrov DA. X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis. Genetics. 171: 145-55. PMID 15965246 DOI: 10.1534/Genetics.105.043497  0.69
2005 Arndt PF, Hwa T, Petrov DA. Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects. Journal of Molecular Evolution. 60: 748-63. PMID 15959677 DOI: 10.1007/S00239-004-0222-5  0.325
2005 Davis JC, Brandman O, Petrov DA. Protein evolution in the context of Drosophila development. Journal of Molecular Evolution. 60: 774-85. PMID 15909223 DOI: 10.1007/S00239-004-0241-2  0.526
2005 Gu Z, David L, Petrov D, Jones T, Davis RW, Steinmetz LM. Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 102: 1092-7. PMID 15647350 DOI: 10.1073/Pnas.0409159102  0.355
2005 Knight CA, Molinari NA, Petrov DA. The large genome constraint hypothesis: evolution, ecology and phenotype. Annals of Botany. 95: 177-90. PMID 15596465 DOI: 10.1093/Aob/Mci011  0.346
2005 Singh ND, Arndt PF, Petrov DA. Genomic heterogeneity of background substitutional patterns in Drosophila melanogaster. Genetics. 169: 709-22. PMID 15520267 DOI: 10.1534/Genetics.104.032250  0.668
2004 Morris JR, Petrov DA, Lee AM, Wu CT. Enhancer choice in cis and in trans in Drosophila melanogaster: role of the promoter. Genetics. 167: 1739-47. PMID 15342512 DOI: 10.1534/genetics.104.026955  0.426
2004 Davis JC, Petrov DA. Preferential duplication of conserved proteins in eukaryotic genomes. Plos Biology. 2: E55. PMID 15024414 DOI: 10.1371/Journal.Pbio.0020055  0.596
2004 Singh ND, Petrov DA. Rapid sequence turnover at an intergenic locus in Drosophila. Molecular Biology and Evolution. 21: 670-80. PMID 14739245 DOI: 10.1093/Molbev/Msh060  0.629
2003 Bensasson D, Feldman MW, Petrov DA. Rates of DNA duplication and mitochondrial DNA insertion in the human genome. Journal of Molecular Evolution. 57: 343-54. PMID 14629044 DOI: 10.1007/S00239-003-2485-7  0.703
2003 Petrov DA, Aminetzach YT, Davis JC, Bensasson D, Hirsh AE. Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila. Molecular Biology and Evolution. 20: 880-92. PMID 12716993 DOI: 10.1093/Molbev/Msg102  0.774
2002 Petrov DA. DNA loss and evolution of genome size in Drosophila Genetica. 115: 81-91. PMID 12188050 DOI: 10.1023/A:1016076215168  0.347
2002 Petrov DA. Mutational equilibrium model of genome size evolution Theoretical Population Biology. 61: 531-544. PMID 12167373 DOI: 10.1006/tpbi.2002.1605  0.329
2001 Walbot V, Petrov DA. Gene galaxies in the maize genome Proceedings of the National Academy of Sciences of the United States of America. 98: 8163-8164. PMID 11459945 DOI: 10.1073/Pnas.161278798  0.345
2001 Petrov DA. Evolution of genome size: New approaches to an old problem Trends in Genetics. 17: 23-28. PMID 11163918 DOI: 10.1016/S0168-9525(00)02157-0  0.315
2001 Bensasson D, Petrov DA, Zhang DX, Hartl DL, Hewitt GM. Genomic gigantism: DNA loss is slow in mountain grasshoppers. Molecular Biology and Evolution. 18: 246-53. PMID 11158383 DOI: 10.1093/Oxfordjournals.Molbev.A003798  0.79
2000 Petrov DA, Hartl DL. Pseudogene evolution and natural selection for a compact genome. The Journal of Heredity. 91: 221-7. PMID 10833048 DOI: 10.1093/Jhered/91.3.221  0.686
2000 Petrov DA, Sangster TA, Johnston JS, Hartl DL, Shaw KL. Evidence for DNA loss as a determinant of genome size. Science (New York, N.Y.). 287: 1060-2. PMID 10669421 DOI: 10.1126/Science.287.5455.1060  0.661
1999 Lozovskaya ER, Nurminsky DI, Petrov DA, Hartl DL. Genome size as a mutation-selection-drift process. Genes & Genetic Systems. 74: 201-7. PMID 10734601 DOI: 10.1266/Ggs.74.201  0.795
1999 Petrov DA, Hartl DL. Patterns of nucleotide substitution in Drosophila and mammalian genomes. Proceedings of the National Academy of Sciences of the United States of America. 96: 1475-9. PMID 9990048 DOI: 10.1073/Pnas.96.4.1475  0.632
1998 Petrov DA, Chao YC, Stephenson EC, Hartl DL. Pseudogene evolution in Drosophila suggests a high rate of DNA loss. Molecular Biology and Evolution. 15: 1562-7. PMID 12572619 DOI: 10.1093/Oxfordjournals.Molbev.A025883  0.569
1998 Moriyama EN, Petrov DA, Hartl DL. Genome size and intron size in Drosophila. Molecular Biology and Evolution. 15: 770-3. PMID 9615458 DOI: 10.1093/Oxfordjournals.Molbev.A025980  0.612
1998 Petrov DA, Hartl DL. High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. Molecular Biology and Evolution. 15: 293-302. PMID 9501496 DOI: 10.1093/Oxfordjournals.Molbev.A025926  0.633
1998 Petrov DA, Chao YC, Stephenson EC, Hartl DL. Pseudogene evolution in Drosophila suggests a high rate of DNA loss [1] Molecular Biology and Evolution. 15: 1562-1567.  0.569
1997 Petrov D. Slow but Steady: Reduction of Genome Size through Biased Mutation. The Plant Cell. 9: 1900-1901. PMID 12237350 DOI: 10.1105/Tpc.9.11.1900  0.412
1997 Petrov DA, Hartl DL. Trash DNA is what gets thrown away: high rate of DNA loss in Drosophila. Gene. 205: 279-89. PMID 9461402 DOI: 10.1016/S0378-1119(97)00516-7  0.594
1997 Petrov D, Bennetzen JL, Kellogg EA. Slow but Steady: Reduction of Genome Size through Biased Mutation [with Reply] The Plant Cell. 9: 1900. DOI: 10.2307/3870552  0.412
1996 Petrov DA, Lozovskaya ER, Hartl DL. High intrinsic rate of DNA loss in Drosophila. Nature. 384: 346-9. PMID 8934517 DOI: 10.1038/384346A0  0.624
1996 Siegal ML, Petrov DA, De Aguiar D. Triple-ligation strategy with advantages over directional cloning. Biotechniques. 21: 614, 616, 618-9. PMID 8891209 DOI: 10.2144/96214Bm09  0.598
1995 Lozovskaya ER, Hartl DL, Petrov DA. Genomic regulation of transposable elements in Drosophila. Current Opinion in Genetics & Development. 5: 768-73. PMID 8745075 DOI: 10.1016/0959-437X(95)80009-T  0.635
1995 Petrov DA, Schutzman JL, Hartl DL, Lozovskaya ER. Diverse transposable elements are mobilized in hybrid dysgenesis in Drosophila virilis. Proceedings of the National Academy of Sciences of the United States of America. 92: 8050-4. PMID 7644536 DOI: 10.1073/Pnas.92.17.8050  0.56
1993 Lozovskaya ER, Petrov DA, Hartl DL. A combined molecular and cytogenetic approach to genome evolution in Drosophila using large-fragment DNA cloning. Chromosoma. 102: 253-66. PMID 8486077 DOI: 10.1007/Bf00352399  0.639
1992 Krane DE, Allen RW, Sawyer SA, Petrov DA, Hartl DL. Genetic differences at four DNA typing loci in Finnish, Italian, and mixed Caucasian populations. Proceedings of the National Academy of Sciences of the United States of America. 89: 10583-7. PMID 1438254 DOI: 10.1073/Pnas.89.22.10583  0.621
1992 Danilevskaya ON, Petrov DA, Pavlova MN, Koga A, Kurenova EV, Hartl DL. A repetitive DNA element, associated with telomeric sequences in Drosophila melanogaster, contains open reading frames. Chromosoma. 102: 32-40. PMID 1291227 DOI: 10.1007/Bf00352288  0.575
1991 Smoller DA, Petrov D, Hartl DL. Characterization of bacteriophage P1 library containing inserts of Drosophila DNA of 75-100 kilobase pairs. Chromosoma. 100: 487-94. PMID 1764967 DOI: 10.1007/Bf00352199  0.666
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