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Jose B. Pereira-Leal - Publications

Affiliations: 
Instituto Gulbenkian de Ciencia, Oeiras, Lisboa, Portugal 
Area:
evolution, computational biology, bioinformatics, cell biology
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Churro C, Semedo-Aguiar AP, Silva AD, Pereira-Leal JB, Leite RB. A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria. Scientific Reports. 10: 8679. PMID 32457360 DOI: 10.1038/s41598-020-64774-y  0.638
2019 de Sousa AGG, Tomasino MP, Duarte P, Fernández-Méndez M, Assmy P, Ribeiro H, Surkont J, Leite RB, Pereira-Leal JB, Torgo L, Magalhães C. Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime. Microbial Ecology. PMID 30623212 DOI: 10.1007/s00248-018-01314-2  0.611
2018 Semedo-Aguiar AP, Pereira-Leal JB, Leite RB. Microbial Diversity and Toxin Risk in Tropical Freshwater Reservoirs of Cape Verde. Toxins. 10. PMID 29734762 DOI: 10.3390/Toxins10050186  0.647
2018 Rocha PRF, Silva AD, Godinho L, Dane W, Estrela P, Vandamme LKJ, Pereira-Leal JB, de Leeuw DM, Leite RB. Collective electrical oscillations of a diatom population induced by dark stress. Scientific Reports. 8: 5484. PMID 29615779 DOI: 10.1038/S41598-018-23928-9  0.603
2011 Diekmann Y, Seixas E, Gouw M, Tavares-Cadete F, Seabra MC, Pereira-Leal JB. Thousands of rab GTPases for the cell biologist. Plos Computational Biology. 7: e1002217. PMID 22022256 DOI: 10.1371/Journal.Pcbi.1002217  0.396
2011 Carvalho-Santos Z, Azimzadeh J, Pereira-Leal JB, Bettencourt-Dias M. Evolution: Tracing the origins of centrioles, cilia, and flagella. The Journal of Cell Biology. 194: 165-75. PMID 21788366 DOI: 10.1083/Jcb.201011152  0.365
2010 Carvalho-Santos Z, Machado P, Branco P, Tavares-Cadete F, Rodrigues-Martins A, Pereira-Leal JB, Bettencourt-Dias M. Stepwise evolution of the centriole-assembly pathway. Journal of Cell Science. 123: 1414-26. PMID 20392737 DOI: 10.1242/Jcs.064931  0.363
2008 Levy ED, Pereira-Leal JB. Evolution and dynamics of protein interactions and networks. Current Opinion in Structural Biology. 18: 349-57. PMID 18448325 DOI: 10.1016/J.Sbi.2008.03.003  0.404
2007 Pereira-Leal JB, Levy ED, Kamp C, Teichmann SA. Evolution of protein complexes by duplication of homomeric interactions. Genome Biology. 8: R51. PMID 17411433 DOI: 10.1186/Gb-2007-8-4-R51  0.597
2006 Levy ED, Pereira-Leal JB, Chothia C, Teichmann SA. 3D complex: a structural classification of protein complexes. Plos Computational Biology. 2: e155. PMID 17112313 DOI: 10.1371/Journal.Pcbi.0020155  0.658
2006 Pereira-Leal JB, Levy ED, Teichmann SA. The origins and evolution of functional modules: lessons from protein complexes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 507-17. PMID 16524839 DOI: 10.1098/Rstb.2005.1807  0.595
2005 Mosedale G, Niedzwiedz W, Alpi A, Perrina F, Pereira-Leal JB, Johnson M, Langevin F, Pace P, Patel KJ. The vertebrate Hef ortholog is a component of the Fanconi anemia tumor-suppressor pathway. Nature Structural & Molecular Biology. 12: 763-71. PMID 16116434 DOI: 10.1038/Nsmb981  0.358
2005 El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, ... ... Pereira-Leal JB, et al. Comparative genomics of trypanosomatid parasitic protozoa. Science (New York, N.Y.). 309: 404-9. PMID 16020724 DOI: 10.1126/Science.1112181  0.344
2005 Pereira-Leal JB, Teichmann SA. Novel specificities emerge by stepwise duplication of functional modules. Genome Research. 15: 552-9. PMID 15805495 DOI: 10.1101/Gr.3102105  0.57
2005 Vogel C, Teichmann SA, Pereira-Leal J. The relationship between domain duplication and recombination. Journal of Molecular Biology. 346: 355-65. PMID 15663950 DOI: 10.1016/J.Jmb.2004.11.050  0.496
2005 Pereira-Leal JB, Audit B, Peregrin-Alvarez JM, Ouzounis CA. An exponential core in the heart of the yeast protein interaction network. Molecular Biology and Evolution. 22: 421-5. PMID 15496552 DOI: 10.1093/Molbev/Msi024  0.596
2005 Pereira-Leal J. The evolutionary origin of protein complexes Bmc Bioinformatics. 6: S3. DOI: 10.1186/1471-2105-6-S3-S3  0.474
2004 Kunin V, Pereira-Leal JB, Ouzounis CA. Functional evolution of the yeast protein interaction network. Molecular Biology and Evolution. 21: 1171-6. PMID 15071090 DOI: 10.1093/Molbev/Msh085  0.61
2004 Pereira-Leal JB, Enright AJ, Ouzounis CA. Detection of functional modules from protein interaction networks. Proteins. 54: 49-57. PMID 14705023 DOI: 10.1002/Prot.10505  0.575
2003 von Mering C, Zdobnov EM, Tsoka S, Ciccarelli FD, Pereira-Leal JB, Ouzounis CA, Bork P. Genome evolution reveals biochemical networks and functional modules. Proceedings of the National Academy of Sciences of the United States of America. 100: 15428-33. PMID 14673105 DOI: 10.1073/Pnas.2136809100  0.602
2003 Ouzounis CA, Coulson RM, Enright AJ, Kunin V, Pereira-Leal JB. Classification schemes for protein structure and function. Nature Reviews. Genetics. 4: 508-19. PMID 12838343 DOI: 10.1038/Nrg1113  0.55
2003 Janssen P, Audit B, Cases I, Darzentas N, Goldovsky L, Kunin V, Lopez-Bigas N, Peregrin-Alvarez JM, Pereira-Leal JB, Tsoka S, Ouzounis CA. Beyond 100 genomes. Genome Biology. 4: 402. PMID 12734008 DOI: 10.1186/Gb-2003-4-5-402  0.529
2003 Pereira-Leal JB, Strom M, Godfrey RF, Seabra MC. Structural determinants of Rab and Rab Escort Protein interaction: Rab family motifs define a conserved binding surface. Biochemical and Biophysical Research Communications. 301: 92-7. PMID 12535645 DOI: 10.1016/S0006-291X(02)02963-7  0.386
2002 Pereira-Leal JB, Gomes AQ, Seabra MC. Analysis and preparation of stable complexes between Rab GTPases, Rab escort protein, and Rab geranylgeranyl transferase. Methods in Molecular Biology (Clifton, N.J.). 189: 157-65. PMID 12094584 DOI: 10.1385/1-59259-281-3:157  0.374
2001 Pereira-Leal JB, Seabra MC. Evolution of the Rab family of small GTP-binding proteins. Journal of Molecular Biology. 313: 889-901. PMID 11697911 DOI: 10.1006/Jmbi.2001.5072  0.386
2001 Pereira-Leal JB, Hume AN, Seabra MC. Prenylation of Rab GTPases: molecular mechanisms and involvement in genetic disease. Febs Letters. 498: 197-200. PMID 11412856 DOI: 10.1016/S0014-5793(01)02483-8  0.305
2000 Pereira-Leal JB, Seabra MC. The mammalian Rab family of small GTPases: definition of family and subfamily sequence motifs suggests a mechanism for functional specificity in the Ras superfamily. Journal of Molecular Biology. 301: 1077-87. PMID 10966806 DOI: 10.1006/Jmbi.2000.4010  0.315
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