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John R. Bracht, Ph.D. - Publications

Affiliations: 
2009 Biology University of California, San Diego, La Jolla, CA 
Area:
Molecular Biology
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17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Weinstein DJ, Allen SE, Lau MCY, Erasmus M, Asalone KC, Walters-Conte K, Deikus G, Sebra R, Borgonie G, van Heerden E, Onstott TC, Bracht JR. The genome of a subterrestrial nematode reveals adaptations to heat. Nature Communications. 10: 5268. PMID 31754114 DOI: 10.1038/S41467-019-13245-8  0.313
2019 Yerlici VT, Lu MW, Hoge CR, Miller RV, Neme R, Khurana JS, Bracht JR, Landweber LF. Programmed genome rearrangements in Oxytricha produce transcriptionally active extrachromosomal circular DNA. Nucleic Acids Research. PMID 31504770 DOI: 10.1093/Nar/Gkz725  0.308
2019 Asalone KC, Nelson MM, Bracht JR. Novel Sequence Discovery by Subtractive Genomics. Journal of Visualized Experiments : Jove. PMID 30735163 DOI: 10.3791/58877  0.311
2018 Biederman MK, Nelson MM, Asalone KC, Pedersen AL, Saldanha CJ, Bracht JR. Discovery of the First Germline-Restricted Gene by Subtractive Transcriptomic Analysis in the Zebra Finch, Taeniopygia guttata. Current Biology : Cb. PMID 29731307 DOI: 10.1016/J.Cub.2018.03.067  0.349
2017 Lindblad KA, Bracht JR, Williams AE, Landweber L. Thousands of RNA-cached copies of whole chromosomes are present in the ciliate Oxytricha during development. Rna (New York, N.Y.). PMID 28450531 DOI: 10.1261/Rna.058511.116  0.398
2016 Bracht JR, Wang X, Shetty K, Chen X, Uttarotai GJ, Callihan EC, McCloud SS, Clay DM, Wang J, Nowacki M, Landweber LF. Chromosome fusions triggered by noncoding RNA. Rna Biology. 0. PMID 27267579 DOI: 10.1080/15476286.2016.1195940  0.355
2015 Bracht J, Wang X, Shetty K, Chen X, Nowacki M, McCloud S, Clay D, Landweber L. Abstract A1-28: Chromosome fusions triggered by noncoding RNA Cancer Research. 75. DOI: 10.1158/1538-7445.Transcagen-A1-28  0.316
2014 Chen X, Bracht JR, Goldman AD, Dolzhenko E, Clay DM, Swart EC, Perlman DH, Doak TG, Stuart A, Amemiya CT, Sebra RP, Landweber LF. The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development. Cell. 158: 1187-98. PMID 25171416 DOI: 10.1016/J.Cell.2014.07.034  0.378
2014 Bracht JR. Beyond transcriptional silencing: is methylcytosine a widely conserved eukaryotic DNA elimination mechanism? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 36: 346-52. PMID 24519896 DOI: 10.1002/Bies.201300123  0.335
2013 Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, et al. The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes. Plos Biology. 11: e1001473. PMID 23382650 DOI: 10.1371/Journal.Pbio.1001473  0.347
2013 Bracht JR, Fang W, Goldman AD, Dolzhenko E, Stein EM, Landweber LF. Genomes on the edge: programmed genome instability in ciliates. Cell. 152: 406-16. PMID 23374338 DOI: 10.1016/J.Cell.2013.01.005  0.388
2012 Fang W, Wang X, Bracht JR, Nowacki M, Landweber LF. Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement. Cell. 151: 1243-55. PMID 23217708 DOI: 10.1016/J.Cell.2012.10.045  0.36
2012 Bracht JR, Perlman DH, Landweber LF. Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax. Genome Biology. 13: R99. PMID 23075511 DOI: 10.1186/gb-2012-13-10-r99  0.301
2010 Bracht JR, Van Wynsberghe PM, Mondol V, Pasquinelli AE. Regulation of lin-4 miRNA expression, organismal growth and development by a conserved RNA binding protein in C. elegans Developmental Biology. 348: 210-221. PMID 20937268 DOI: 10.1016/J.Ydbio.2010.10.003  0.743
2005 Bagga S, Bracht J, Hunter S, Massirer K, Holtz J, Eachus R, Pasquinelli AE. Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell. 122: 553-63. PMID 16122423 DOI: 10.1016/J.Cell.2005.07.031  0.623
2005 Pasquinelli AE, Hunter S, Bracht J. MicroRNAs: a developing story. Current Opinion in Genetics & Development. 15: 200-5. PMID 15797203 DOI: 10.1016/J.Gde.2005.01.002  0.688
2004 Bracht J, Hunter S, Eachus R, Weeks P, Pasquinelli AE. Trans-splicing and polyadenylation of let-7 microRNA primary transcripts. Rna (New York, N.Y.). 10: 1586-94. PMID 15337850 DOI: 10.1261/Rna.7122604  0.72
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