Richard (Dick) Hudson - Publications

Evolution and Ecology University of Chicago, Chicago, IL 
Population Genetics

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Nakagome S, Hudson RR, Di Rienzo A. Inferring the model and onset of natural selection under varying population size from the site frequency spectrum and haplotype structure. Proceedings. Biological Sciences. 286: 20182541. PMID 30963935 DOI: 10.1098/rspb.2018.2541  0.48
2018 Simons YB, Bullaughey K, Hudson RR, Sella G. A population genetic interpretation of GWAS findings for human quantitative traits. Plos Biology. 16: e2002985. PMID 29547617 DOI: 10.1371/Journal.Pbio.2002985  0.68
2015 Ling S, Hu Z, Yang Z, Yang F, Li Y, Lin P, Chen K, Dong L, Cao L, Tao Y, Hao L, Chen Q, Gong Q, Wu D, Li W, ... ... Hudson RR, et al. Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 26561581 DOI: 10.1073/Pnas.1519556112  0.76
2015 Nakagome S, Alkorta-Aranburu G, Amato R, Howie B, Peter BM, Hudson RR, Di Rienzo A. Estimating the ages of selection signals from different epochs in human history. Molecular Biology and Evolution. PMID 26545921 DOI: 10.1093/Molbev/Msv256  0.76
2015 Hudson RR. A New Proof of the Expected Frequency Spectrum under the Standard Neutral Model. Plos One. 10: e0118087. PMID 26197064 DOI: 10.1371/journal.pone.0118087  0.76
2014 Karasov TL, Kniskern JM, Gao L, DeYoung BJ, Ding J, Dubiella U, Lastra RO, Nallu S, Roux F, Innes RW, Barrett LG, Hudson RR, Bergelson J. The long-term maintenance of a resistance polymorphism through diffuse interactions. Nature. 512: 436-40. PMID 25043057 DOI: 10.1038/Nature13439  0.76
2013 Watt WB, Hudson RR, Wang B, Wang E. A genetic polymorphism evolving in parallel in two cell compartments and in two clades. Bmc Evolutionary Biology. 13: 9. PMID 23311980 DOI: 10.1186/1471-2148-13-9  0.76
2012 Meyer WK, Arbeithuber B, Ober C, Ebner T, Tiemann-Boege I, Hudson RR, Przeworski M. Evaluating the evidence for transmission distortion in human pedigrees. Genetics. 191: 215-32. PMID 22377632 DOI: 10.1534/Genetics.112.139576  0.76
2011 He Z, Zhai W, Wen H, Tang T, Wang Y, Lu X, Greenberg AJ, Hudson RR, Wu CI, Shi S. Two evolutionary histories in the genome of rice: the roles of domestication genes. Plos Genetics. 7: e1002100. PMID 21695282 DOI: 10.1371/Journal.Pgen.1002100  0.76
2011 Jha AR, Nixon DF, Rosenberg MG, Martin JN, Deeks SG, Hudson RR, Garrison KE, Pillai SK. Human endogenous retrovirus K106 (HERV-K106) was infectious after the emergence of anatomically modern humans. Plos One. 6: e20234. PMID 21633511 DOI: 10.1371/Journal.Pone.0020234  0.76
2011 Luca F, Hudson RR, Witonsky DB, Di Rienzo A. A reduced representation approach to population genetic analyses and applications to human evolution. Genome Research. 21: 1087-98. PMID 21628451 DOI: 10.1101/Gr.119792.110  0.76
2008 Tian D, Wang Q, Zhang P, Araki H, Yang S, Kreitman M, Nagylaki T, Hudson R, Bergelson J, Chen JQ. Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes. Nature. 455: 105-8. PMID 18641631 DOI: 10.1038/Nature07175  0.76
2007 Shapiro JA, Huang W, Zhang C, Hubisz MJ, Lu J, Turissini DA, Fang S, Wang HY, Hudson RR, Nielsen R, Chen Z, Wu CI. Adaptive genic evolution in the Drosophila genomes. Proceedings of the National Academy of Sciences of the United States of America. 104: 2271-6. PMID 17284599 DOI: 10.1073/Pnas.0610385104  0.76
2006 Evans PD, Mekel-Bobrov N, Vallender EJ, Hudson RR, Lahn BT. Evidence that the adaptive allele of the brain size gene microcephalin introgressed into Homo sapiens from an archaic Homo lineage. Proceedings of the National Academy of Sciences of the United States of America. 103: 18178-83. PMID 17090677 DOI: 10.1073/Pnas.0606966103  0.76
2005 Voight BF, Adams AM, Frisse LA, Qian Y, Hudson RR, Di Rienzo A. Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes. Proceedings of the National Academy of Sciences of the United States of America. 102: 18508-13. PMID 16352722 DOI: 10.1073/Pnas.0507325102  0.76
2005 Di Rienzo A, Hudson RR. An evolutionary framework for common diseases: the ancestral-susceptibility model. Trends in Genetics : Tig. 21: 596-601. PMID 16153740 DOI: 10.1016/j.tig.2005.08.007  0.76
2005 Mekel-Bobrov N, Gilbert SL, Evans PD, Vallender EJ, Anderson JR, Hudson RR, Tishkoff SA, Lahn BT. Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens. Science (New York, N.Y.). 309: 1720-2. PMID 16151010 DOI: 10.1126/Science.1116815  0.76
2005 Evans PD, Gilbert SL, Mekel-Bobrov N, Vallender EJ, Anderson JR, Vaez-Azizi LM, Tishkoff SA, Hudson RR, Lahn BT. Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans. Science (New York, N.Y.). 309: 1717-20. PMID 16151009 DOI: 10.1126/Science.1113722  0.76
2005 Vander Molen J, Frisse LM, Fullerton SM, Qian Y, Del Bosque-Plata L, Hudson RR, Di Rienzo A. Population genetics of CAPN10 and GPR35: implications for the evolution of type 2 diabetes variants. American Journal of Human Genetics. 76: 548-60. PMID 15696418 DOI: 10.1086/428784  0.76
2004 Adams AM, Hudson RR. Maximum-likelihood estimation of demographic parameters using the frequency spectrum of unlinked single-nucleotide polymorphisms. Genetics. 168: 1699-712. PMID 15579718 DOI: 10.1534/genetics.104.030171  0.76
2003 Wall JD, Frisse LA, Hudson RR, Di Rienzo A. Comparative linkage-disequilibrium analysis of the beta-globin hotspot in primates. American Journal of Human Genetics. 73: 1330-40. PMID 14628290 DOI: 10.1086/380311  0.76
2002 Hudson RR, Coyne JA. Mathematical consequences of the genealogical species concept. Evolution; International Journal of Organic Evolution. 56: 1557-65. PMID 12353748 DOI: 10.1111/j.0014-3820.2002.tb01467.x  0.76
2002 Fullerton SM, Bartoszewicz A, Ybazeta G, Horikawa Y, Bell GI, Kidd KK, Cox NJ, Hudson RR, Di Rienzo A. Geographic and haplotype structure of candidate type 2 diabetes susceptibility variants at the calpain-10 locus. American Journal of Human Genetics. 70: 1096-106. PMID 11891618 DOI: 10.1086/339930  0.76
2001 Frisse L, Hudson RR, Bartoszewicz A, Wall JD, Donfack J, Di Rienzo A. Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels. American Journal of Human Genetics. 69: 831-43. PMID 11533915 DOI: 10.1086/323612  0.76
2001 Wall JD, Hudson RR. Coalescent simulations and statistical tests of neutrality. Molecular Biology and Evolution. 18: 1134-5; author reply. PMID 11371601 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A003884  0.84
2000 Haubold B, Hudson RR. LIAN 3.0: detecting linkage disequilibrium in multilocus data. Linkage Analysis. Bioinformatics (Oxford, England). 16: 847-8. PMID 11108709 DOI: 10.1093/bioinformatics/16.9.847  0.76
2000 Przeworski M, Hudson RR, Di Rienzo A. Adjusting the focus on human variation. Trends in Genetics : Tig. 16: 296-302. PMID 10858659 DOI: 10.1016/S0168-9525(00)02030-8  0.76
1998 Rich SM, Licht MC, Hudson RR, Ayala FJ. Malaria's Eve: evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum. Proceedings of the National Academy of Sciences of the United States of America. 95: 4425-30. PMID 9539753 DOI: 10.1073/PNAS.95.8.4425  0.48
1998 Rich SM, Hudson RR, Ayala FJ. Plasmodium falciparum antigenic diversity: evidence of clonal population structure. Proceedings of the National Academy of Sciences of the United States of America. 94: 13040-5. PMID 9371796 DOI: 10.1073/PNAS.94.24.13040  0.4
1997 Palsbøll PJ, Allen J, Bérubé M, Clapham PJ, Feddersen TP, Hammond PS, Hudson RR, Jørgensen H, Katona S, Larsen AH, Larsen F, Lien J, Mattila DK, Sigurjónsson J, Sears R, et al. Genetic tagging of humpback whales. Nature. 388: 767-9. PMID 9285587 DOI: 10.1038/42005  0.76
1997 Hudson RR, Sáez AG, Ayala FJ. DNA variation at the Sod locus of Drosophila melanogaster: an unfolding story of natural selection. Proceedings of the National Academy of Sciences of the United States of America. 94: 7725-9. PMID 9223255 DOI: 10.1073/PNAS.94.15.7725  0.64
1995 Hudson RR, Kaplan NL. The coalescent process and background selection Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 349: 19-23. PMID 8748015 DOI: 10.1098/Rstb.1995.0086  0.76
1992 Hudson RR, Boos DD, Kaplan NL. A statistical test for detecting geographic subdivision Molecular Biology and Evolution. 9: 138-151. PMID 1552836 DOI: 10.1093/Oxfordjournals.Molbev.A040703  0.76
1992 Souza V, Nguyen TT, Hudson RR, Piñero D, Lenski RE. Hierarchical analysis of linkage disequilibrium in Rhizobium populations: evidence for sex? Proceedings of the National Academy of Sciences of the United States of America. 89: 8389-93. PMID 1518873 DOI: 10.1073/Pnas.89.17.8389  0.76
1991 Kwiatowski J, Hudson RR, Ayala FJ. The rate of Cu,Zn superoxide dismutase evolution. Free Radical Research Communications. 363-70. PMID 2071040 DOI: 10.3109/10715769109145805  0.6
1989 Darden T, Kaplan NL, Hudson RR. A numerical method for calculating moments of coalescent times in finite populations with selection Journal of Mathematical Biology. 27: 355-368. PMID 2746143 DOI: 10.1007/Bf00275818  0.76
1988 Antonarakis SE, Oettgen P, Chakravarti A, Halloran SL, Hudson RR, Feisee L, Karathanasis SK. DNA polymorphism haplotypes of the human apolipoprotein APOA1-APOC3-APOA4 gene cluster Human Genetics. 80: 265-273. PMID 2903847 DOI: 10.1007/Bf01790095  0.76
1988 Langley CH, Montgomery E, Hudson R, Kaplan N, Charlesworth B. On the role of unequal exchange in the containment of transposable element copy number Genetical Research. 52: 223-235. PMID 2854088 DOI: 10.1017/S0016672300027695  0.76
1987 Kaplan NL, Hudson RR. On the divergence of genes in multigene families Theoretical Population Biology. 31: 178-194. PMID 3563942 DOI: 10.1016/0040-5809(87)90028-1  0.76
1986 Hudson RR, Kaplan NL. On the divergence of members of a transposable element family Journal of Mathematical Biology. 24: 207-215. PMID 3018116 DOI: 10.1007/Bf00275999  0.76
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