John Klicka - Publications

Affiliations: 
Biological Sciences University of Nevada, Las Vegas, Las Vegas, NV, United States 
Area:
Genetics, Evolution and Development Biology, Geobiology

78 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Moreira LR, Klicka J, Smith BT. Demography and linked selection interact to shape the genomic landscape of codistributed woodpeckers during the Ice Age. Molecular Ecology. PMID 36617622 DOI: 10.1111/mec.16841  0.726
2021 Bryson RW, Grummer JA, Connors EM, Tirpak J, McCormack JE, Klicka J. Cryptic diversity across the Trans-Mexican Volcanic Belt of Mexico in the montane bunchgrass lizard Sceloporus subniger/ (Squamata: Phrynosomatidae). Zootaxa. 4963: zootaxa.4963.2.5. PMID 33903554 DOI: 10.11646/zootaxa.4963.2.5  0.481
2020 Slager DL, Epperly KL, Ha RR, Rohwer S, Wood C, Van Hemert C, Klicka J. Cryptic and extensive hybridization between ancient lineages of American crows. Molecular Ecology. PMID 32034818 DOI: 10.1111/Mec.15377  0.503
2020 Zamudio-Beltrán LE, Licona-Vera Y, Hernández-Baños BE, Klicka J, Ornelas JF. Phylogeography of the widespread white-eared hummingbird (Hylocharis leucotis): pre-glacial expansion and genetic differentiation of populations separated by the Isthmus of Tehuantepec Biological Journal of the Linnean Society. 130: 247-267. DOI: 10.1093/Biolinnean/Blaa043  0.499
2019 Linck E, Epperly K, Van Els P, Spellman GM, Bryson RW, McCormack JE, Canales-Del-Castillo R, Klicka J. Dense Geographic and Genomic Sampling Reveals Paraphyly and a Cryptic Lineage in a Classic Sibling Species Complex. Systematic Biology. PMID 31135028 DOI: 10.1093/Sysbio/Syz027  0.572
2018 Blair C, Bryson RW, Linkem CW, Lazcano D, Klicka J, McCormack JE. Cryptic diversity in the Mexican highlands: Thousands of UCE loci help illuminate phylogenetic relationships, species limits and divergence times of montane rattlesnakes (Viperidae: Crotalus). Molecular Ecology Resources. PMID 30565862 DOI: 10.1111/1755-0998.12970  0.562
2018 Ramírez-Barrera SM, Hernández-Baños BE, Jaramillo-Correa JP, Klicka J. Deep divergence of Red-crowned Ant Tanager (: Cardinalidae), a multilocus phylogenetic analysis with emphasis in Mesoamerica. Peerj. 6: e5496. PMID 30225165 DOI: 10.7717/Peerj.5496  0.586
2018 Bryson RW, Zarza E, Grummer JA, Parra-Olea G, Flores-Villela O, Klicka J, McCormack JE. Phylogenomic insights into the diversification of salamanders in the Isthmura bellii group across the Mexican highlands. Molecular Phylogenetics and Evolution. 125: 78-84. PMID 29555294 DOI: 10.1016/J.Ympev.2018.03.024  0.429
2018 Tilston Smith B, Bryson RW, Mauck WM, Chaves J, Robbins MB, Aleixo A, Klicka J. Species delimitation and biogeography of the gnatcatchers and gnatwrens (Aves: Polioptilidae). Molecular Phylogenetics and Evolution. PMID 29551521 DOI: 10.1016/J.Ympev.2018.03.012  0.586
2018 Battey CJ, Linck EB, Epperly KL, French C, Slager DL, Sykes PW, Klicka J. A Migratory Divide in the Painted Bunting (Passerina ciris). The American Naturalist. 191: 259-268. PMID 29351011 DOI: 10.1086/695439  0.423
2017 Battey CJ, Klicka J. Cryptic speciation and gene flow in a migratory songbird Species Complex: Insights from the Red-Eyed Vireo (Vireo olivaceus). Molecular Phylogenetics and Evolution. 113: 67-75. PMID 28502764 DOI: 10.1016/J.Ympev.2017.05.006  0.565
2017 Sandoval L, Epperly KL, Klicka J, Mennill DJ. The biogeographic and evolutionary history of an endemic clade of Middle American sparrows: Melozone and Aimophila (Aves: Passerellidae). Molecular Phylogenetics and Evolution. 110: 50-59. PMID 28286101 DOI: 10.1016/J.Ympev.2017.03.008  0.574
2016 Barrowclough GF, Cracraft J, Klicka J, Zink RM. How Many Kinds of Birds Are There and Why Does It Matter? Plos One. 11: e0166307. PMID 27880775 DOI: 10.1371/Journal.Pone.0166307  0.731
2016 Zarza E, Faircloth BC, Tsai WL, Bryson RW, Klicka J, McCormack JE. Hidden histories of gene flow in highland birds revealed with genomic markers. Molecular Ecology. PMID 27543758 DOI: 10.1111/Mec.13813  0.4
2016 Bryson RW, Faircloth BC, Tsai WLE, McCormack JE, Klicka J. Target enrichment of thousands of ultraconserved elements sheds new light on early relationships within New World sparrows (Aves: Passerellidae) Auk. 133: 451-458. DOI: 10.1642/Auk-16-26.1  0.539
2015 Manthey JD, Klicka J, Spellman GM. Chromosomal patterns of diversity and differentiation in creepers: a next-gen phylogeographic investigation of Certhia americana. Heredity. PMID 25853518 DOI: 10.1038/Hdy.2015.27  0.409
2015 Barker K, Burns KJ, Klicka J, Lanyon SM, Lovette IJ. New insights into New World biogeography: An integrated view from the phylogeny of blackbirds, cardinals, sparrows, tanagers, warblers, and allies Auk. 132: 333-348. DOI: 10.1642/Auk-14-110.1  0.592
2015 Miller MJ, Angehr GR, Ridgely RS, Klicka J, Oscar OG, Arauz J, Campos C. E, Buitrago-Rosas D. Annotated checklist of the birds (Aves) of Cerro Hoya National Park, Azuero Peninsula, Panamá Check List. 11. DOI: 10.15560/11.2.1585  0.508
2014 Slager DL, Klicka J. Polyphyly of Hylophilus and a new genus for the Tawny-crowned Greenlet (Aves: Passeriformes: Vireonidae). Zootaxa. 3884: 194-6. PMID 25543778 DOI: 10.11646/Zootaxa.3884.2.8  0.498
2014 Slager DL, Battey CJ, Bryson RW, Voelker G, Klicka J. A multilocus phylogeny of a major New World avian radiation: the Vireonidae. Molecular Phylogenetics and Evolution. 80: 95-104. PMID 25109651 DOI: 10.1016/J.Ympev.2014.07.021  0.59
2014 van Els P, Spellman GM, Smith BT, Klicka J. Extensive gene flow characterizes the phylogeography of a North American migrant bird: Black-headed Grosbeak (Pheucticus melanocephalus). Molecular Phylogenetics and Evolution. 78: 148-59. PMID 24841539 DOI: 10.1016/J.Ympev.2014.04.028  0.632
2014 Klicka J, Keith Barker F, Burns KJ, Lanyon SM, Lovette IJ, Chaves JA, Bryson RW. A comprehensive multilocus assessment of sparrow (Aves: Passerellidae) relationships. Molecular Phylogenetics and Evolution. 77: 177-82. PMID 24792084 DOI: 10.1016/J.Ympev.2014.04.025  0.751
2014 Burns KJ, Shultz AJ, Title PO, Mason NA, Barker FK, Klicka J, Lanyon SM, Lovette IJ. Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds. Molecular Phylogenetics and Evolution. 75: 41-77. PMID 24583021 DOI: 10.1016/J.Ympev.2014.02.006  0.74
2014 Powell AF, Barker FK, Lanyon SM, Burns KJ, Klicka J, Lovette IJ. A comprehensive species-level molecular phylogeny of the New World blackbirds (Icteridae). Molecular Phylogenetics and Evolution. 71: 94-112. PMID 24291659 DOI: 10.1016/J.Ympev.2013.11.009  0.738
2014 Hernández-Baños BE, Zamudio-Beltrán LE, Eguiarte-Fruns LE, Klicka J, García-Moreno J. The Basilinna genus (Aves: Trochilidae): An evaluation based on molecular evidence and implications for the genus Hylocharis Revista Mexicana De Biodiversidad. 85: 797-807. DOI: 10.7550/Rmb.35769  0.55
2014 Manthey JD, Klicka J, Spellman GM. Effects of climate change on the evolution of Brown Creeper (Certhia americana) lineages Auk. 131: 559-570. DOI: 10.1642/Auk-13-242.1  0.469
2014 Bryson RW, Chaves J, Smith BT, Miller MJ, Winker K, Pérez-Emán JL, Klicka J. Diversification across the New World within the 'blue' cardinalids (Aves: Cardinalidae) Journal of Biogeography. 41: 587-599. DOI: 10.1111/Jbi.12218  0.532
2013 Pulgarín-R PC, Smith BT, Bryson RW, Spellman GM, Klicka J. Multilocus phylogeny and biogeography of the New World Pheucticus grosbeaks (Aves: Cardinalidae). Molecular Phylogenetics and Evolution. 69: 1222-7. PMID 23769955 DOI: 10.1016/J.Ympev.2013.05.022  0.67
2013 Voelker G, Bowie RC, Klicka J. Gene trees, species trees and Earth history combine to shed light on the evolution of migration in a model avian system. Molecular Ecology. 22: 3333-44. PMID 23710782 DOI: 10.1111/Mec.12305  0.506
2013 Smith BT, Klicka J. Examining the role of effective population size on mitochondrial and multilocus divergence time discordance in a songbird. Plos One. 8: e55161. PMID 23457463 DOI: 10.1371/Journal.Pone.0055161  0.641
2013 Barker FK, Burns KJ, Klicka J, Lanyon SM, Lovette IJ. Going to extremes: contrasting rates of diversification in a recent radiation of new world passerine birds. Systematic Biology. 62: 298-320. PMID 23229025 DOI: 10.1093/Sysbio/Sys094  0.721
2013 Smith BT, Bryson RW, Chua V, Africa L, Klicka J. Speciational history of North American Haemorhous finches (Aves: Fringillidae) inferred from multilocus data. Molecular Phylogenetics and Evolution. 66: 1055-9. PMID 23219607 DOI: 10.1016/J.Ympev.2012.11.016  0.64
2013 Smith BT, Ribas CC, Whitney BM, Hernández-Baños BE, Klicka J. Identifying biases at different spatial and temporal scales of diversification: a case study in the Neotropical parrotlet genus Forpus. Molecular Ecology. 22: 483-94. PMID 23190339 DOI: 10.1111/Mec.12118  0.699
2013 Chaves JA, Hidalgo JR, Klicka J. Biogeography and evolutionary history of the neotropical genus saltator (Aves: Thraupini) Journal of Biogeography. 40: 2180-2190. DOI: 10.1111/Jbi.12150  0.577
2012 Manthey JD, Klicka J, Spellman GM. Is gene flow promoting the reversal of pleistocene divergence in the Mountain Chickadee (Poecile gambeli)? Plos One. 7: e49218. PMID 23152877 DOI: 10.1371/Journal.Pone.0049218  0.469
2012 Smith BT, Bryson RW, Houston DD, Klicka J. An asymmetry in niche conservatism contributes to the latitudinal species diversity gradient in New World vertebrates. Ecology Letters. 15: 1318-25. PMID 22909289 DOI: 10.1111/J.1461-0248.2012.01855.X  0.693
2012 Smith BT, Amei A, Klicka J. Evaluating the role of contracting and expanding rainforest in initiating cycles of speciation across the Isthmus of Panama. Proceedings. Biological Sciences / the Royal Society. 279: 3520-6. PMID 22673352 DOI: 10.1098/Rspb.2012.0706  0.682
2012 van Els P, Cicero C, Klicka J. High latitudes and high genetic diversity: phylogeography of a widespread boreal bird, the gray jay (Perisoreus canadensis). Molecular Phylogenetics and Evolution. 63: 456-65. PMID 22321688 DOI: 10.1016/J.Ympev.2012.01.019  0.572
2012 Walstrom VW, Klicka J, Spellman GM. Speciation in the White-breasted Nuthatch (Sitta carolinensis): a multilocus perspective. Molecular Ecology. 21: 907-20. PMID 22192449 DOI: 10.1111/J.1365-294X.2011.05384.X  0.553
2011 Manthey JD, Klicka J, Spellman GM. Isolation-driven divergence: speciation in a widespread North American songbird (Aves: Certhiidae). Molecular Ecology. 20: 4371-84. PMID 21933295 DOI: 10.1111/J.1365-294X.2011.05270.X  0.555
2011 Smith BT, Escalante P, Hernández Baños BE, Navarro-Sigüenza AG, Rohwer S, Klicka J. The role of historical and contemporary processes on phylogeographic structure and genetic diversity in the Northern Cardinal, Cardinalis cardinalis. Bmc Evolutionary Biology. 11: 136. PMID 21599972 DOI: 10.1186/1471-2148-11-136  0.676
2011 Manthey JD, Klicka J, Spellman GM. Cryptic diversity in a widespread North American songbird: phylogeography of the Brown Creeper (Certhia americana). Molecular Phylogenetics and Evolution. 58: 502-12. PMID 21168520 DOI: 10.1016/J.Ympev.2010.12.003  0.605
2011 Van Els P, Canales-Del-Castillo R, Klicka J. Botteri's sparrow (Peucaea botterii) occurs in Northern Coahuila, Mexico Wilson Journal of Ornithology. 123: 414-416. DOI: 10.1676/10-172.1  0.456
2011 Miller MJ, Lelevier MJ, Bermingham E, Klicka JT, Escalante P, Winker K. Phylogeography of the Rufous-tailed Hummingbird (Amazilia tzacatl) Condor. 113: 806-816. DOI: 10.1525/Cond.2011.100226  0.482
2011 Klicka J, Spellman GM, Winker K, Chua V, Smith BT. A Phylogeographic and population genetic analysis of a widespread, sedentary North American bird: The Hairy Woodpecker (Picoides villosus) Auk. 128: 346-362. DOI: 10.1525/Auk.2011.10264  0.683
2011 Herr CA, Sykes PW, Klicka J. Phylogeography of a vanishing North American songbird: The Painted Bunting (Passerina ciris) Conservation Genetics. 12: 1395-1410. DOI: 10.1007/S10592-011-0237-6  0.446
2010 Canales-del-Castillo R, Klicka J, Favela S, González-Rojas JI. Molecular phylogenetic analysis of an endangered Mexican sparrow: Spizella wortheni. Molecular Phylogenetics and Evolution. 57: 1319-22. PMID 20723611 DOI: 10.1016/J.Ympev.2010.08.009  0.543
2010 Lovette IJ, Pérez-Emán JL, Sullivan JP, Banks RC, Fiorentino I, Córdoba-Córdoba S, Echeverry-Galvis M, Barker FK, Burns KJ, Klicka J, Lanyon SM, Bermingham E. A comprehensive multilocus phylogeny for the wood-warblers and a revised classification of the Parulidae (Aves). Molecular Phylogenetics and Evolution. 57: 753-70. PMID 20696258 DOI: 10.1016/J.Ympev.2010.07.018  0.742
2010 Miller MJ, Bermingham E, Klicka J, Escalante P, Winker K. Neotropical birds show a humped distribution of within-population genetic diversity along a latitudinal transect. Ecology Letters. 13: 576-86. PMID 20529101 DOI: 10.1111/J.1461-0248.2010.01454.X  0.555
2010 Barber BR, Klicka J. Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna. Proceedings. Biological Sciences / the Royal Society. 277: 2675-81. PMID 20410037 DOI: 10.1098/Rspb.2010.0343  0.734
2010 Smith BT, Klicka J. The profound influence of the late Pliocene Panamanian uplift on the exchange, diversification, and distribution of new world birds Ecography. 33: 333-342. DOI: 10.1111/J.1600-0587.2009.06335.X  0.665
2009 Escalante P, Márquez-Valdelamar L, de la Torre P, Laclette JP, Klicka J. Evolutionary history of a prominent North American warbler clade: the Oporornis-Geothlypis complex. Molecular Phylogenetics and Evolution. 53: 668-78. PMID 19616636 DOI: 10.1016/J.Ympev.2009.07.014  0.616
2009 DaCosta JM, Spellman GM, Escalante P, Klicka J. A molecular systematic revision of two historically problematic songbird clades: Aimophila and Pipilo Journal of Avian Biology. 40: 206-216. DOI: 10.1111/J.1600-048X.2009.04514.X  0.532
2008 Voelker G, Klicka J. Systematics of Zoothera thrushes, and a synthesis of true thrush molecular systematic relationships. Molecular Phylogenetics and Evolution. 49: 377-81. PMID 18639642 DOI: 10.1016/J.Ympev.2008.06.014  0.329
2008 Weir JT, Bermingham E, Miller MJ, Klicka J, González MA. Phylogeography of a morphologically diverse Neotropical montane species, the Common Bush-Tanager (Chlorospingus ophthalmicus). Molecular Phylogenetics and Evolution. 47: 650-64. PMID 18378470 DOI: 10.1016/J.Ympev.2008.02.004  0.562
2008 DaCosta JM, Klicka J. The Great American Interchange in birds: a phylogenetic perspective with the genus Trogon. Molecular Ecology. 17: 1328-43. PMID 18302692 DOI: 10.1111/J.1365-294X.2007.03647.X  0.587
2008 Miller MJ, Bermingham E, Klicka J, Escalante P, do Amaral FS, Weir JT, Winker K. Out of Amazonia again and again: episodic crossing of the Andes promotes diversification in a lowland forest flycatcher. Proceedings. Biological Sciences / the Royal Society. 275: 1133-42. PMID 18285279 DOI: 10.1098/Rspb.2008.0015  0.577
2008 Dacosta JM, Wehtje W, Klicka J. Historic genetic structuring and paraphyly within the great-tailed gracle Condor. 110: 170-177. DOI: 10.1525/Cond.2008.110.1.170  0.565
2008 Pagenkopp KM, Klicka J, Durrant KL, Garvin JC, Fleischer RC. Geographic variation in malarial parasite lineages in the common yellowthroat (Geothlypis trichas) Conservation Genetics. 9: 1577-1588. DOI: 10.1007/S10592-007-9497-6  0.386
2007 Klicka J, Burns K, Spellman GM. Defining a monophyletic Cardinalini: a molecular perspective. Molecular Phylogenetics and Evolution. 45: 1014-32. PMID 17920298 DOI: 10.1016/J.Ympev.2007.07.006  0.74
2007 Spellman GM, Klicka J. Phylogeography of the white-breasted nuthatch (Sitta carolinensis): diversification in North American pine and oak woodlands. Molecular Ecology. 16: 1729-40. PMID 17402986 DOI: 10.1111/J.1365-294X.2007.03237.X  0.481
2007 Spellman GM, Riddle B, Klicka J. Phylogeography of the mountain chickadee (Poecile gambeli): diversification, introgression, and expansion in response to Quaternary climate change. Molecular Ecology. 16: 1055-68. PMID 17305860 DOI: 10.1111/J.1365-294X.2007.03199.X  0.531
2007 Cadena CD, Klicka J, Ricklefs RE. Evolutionary differentiation in the Neotropical montane region: molecular phylogenetics and phylogeography of Buarremon brush-finches (Aves, Emberizidae). Molecular Phylogenetics and Evolution. 44: 993-1016. PMID 17275342 DOI: 10.1016/J.Ympev.2006.12.012  0.474
2007 Klicka J, Spellman GM. A molecular evaluation of the North American "grassland" sparrow clade Auk. 124: 537-551. DOI: 10.1642/0004-8038(2007)124[537:Ameotn]2.0.Co;2  0.544
2006 Spellman GM, Klicka J. Testing hypotheses of Pleistocene population history using coalescent simulations: phylogeography of the pygmy nuthatch (Sitta pygmaea). Proceedings. Biological Sciences / the Royal Society. 273: 3057-63. PMID 17015345 DOI: 10.1098/Rspb.2006.3682  0.475
2006 Zink RM, Klicka J. The tempo of avian diversification: a comment on Johnson and Cicero. Evolution; International Journal of Organic Evolution. 60: 411-2; discussion 41. PMID 16610332 DOI: 10.1554/05-420.1  0.648
2005 Klicka J, Voelker G, Spellman GM. A molecular phylogenetic analysis of the "true thrushes" (Aves: Turdinae). Molecular Phylogenetics and Evolution. 34: 486-500. PMID 15683924 DOI: 10.1016/J.Ympev.2004.10.001  0.572
2005 Klicka J, Voelker G, Spellman GM. Corrigendum to “A molecular phylogenetic analysis of the ‘true thrushes’ (Aves: Turdinae)” [Mol. Phylogenet. Evol. 34 (2005) 486–500] Molecular Phylogenetics and Evolution. 35: 725. DOI: 10.1016/J.Ympev.2005.03.001  0.388
2004 Zink RM, Klicka J, Barber BR. The tempo of avian diversification during the Quaternary. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 359: 215-9; discussion 21. PMID 15101578 DOI: 10.1098/Rstb.2003.1392  0.744
2003 Klicka J, Zink RM, Winker K. Longspurs and snow buntings: phylogeny and biogeography of a high-latitude clade (Calcarius). Molecular Phylogenetics and Evolution. 26: 165-75. PMID 12565028 DOI: 10.1016/S1055-7903(02)00360-3  0.7
2001 Klicka J, Zink RM, Barlow JC, McGillivray WB, Doyle TJ. The taxonomic rank of Spizella taverneri: A response to Mayr and Johnson Condor. 103: 420-422. DOI: 10.1650/0010-5422(2001)103[0420:Ttrost]2.0.Co;2  0.705
2001 Klicka J, Fry AJ, Zink RM, Thompson CW. A cytochrome-b perspective on Passerina bunting relationships Auk. 118: 611-623. DOI: 10.1642/0004-8038(2001)118[0610:Acbpop]2.0.Co;2  0.664
2000 Klicka J, Johnson KP, Lanyon SM. New world nine-primaried oscine relationships: Constructing a mitochondrial DNA framework Auk. 117: 321-336. DOI: 10.1642/0004-8038(2000)117[0321:Nwnpor]2.0.Co;2  0.429
1999 Zink RM, Dittmann DL, Klicka J, Blackwell-Rago RC. Evolutionary patterns of morphometrics, allozymes, and mitochondrial DNA in thrashers (genus Toxostoma) Auk. 116: 1021-1038. DOI: 10.2307/4089682  0.608
1999 Klicka J, Zink RM, Barlow JC, Mcgillivray WB, Doyle TJ. Evidence supporting the recent origin and species status of the Timberline Sparrow Condor. 101: 577-588. DOI: 10.2307/1370187  0.742
1999 Klicka J, Zink RM. Pleistocene effects on North American songbird evolution Proceedings of the Royal Society B: Biological Sciences. 266: 695-700. DOI: 10.1098/Rspb.1999.0691  0.737
1997 Klicka J, Zink RM. The importance of recent ice ages in speciation: A failed paradigm Science. 277: 1666-1669. DOI: 10.1126/Science.277.5332.1666  0.706
1971 Klicka J, Mahmoud IY. A comparative study of respiratory pigment concentrations in six species of turtles Comparative Biochemistry and Physiology -- Part a: Physiology. 38: 53-58. PMID 4395845 DOI: 10.1016/0300-9629(71)90097-1  0.338
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