| Year |
Citation |
Score |
| 2024 |
He L, Wang Y, Wang Y, Zhang RG, Wang Y, Hörandl E, Ma T, Mao YF, Mank JE, Ming R. Allopolyploidization from two dioecious ancestors leads to recurrent evolution of sex chromosomes. Nature Communications. 15: 6893. PMID 39134553 DOI: 10.1038/s41467-024-51158-3 |
0.406 |
|
| 2024 |
Fatima M, Ma X, Zhang J, Ming R. Genome-wide analysis of MADS-box genes and their expression patterns in unisexual flower development in dioecious spinach. Scientific Reports. 14: 18635. PMID 39128921 DOI: 10.1038/s41598-024-68965-9 |
0.31 |
|
| 2024 |
Qiao H, Zhou X, Yi Y, Wei L, Xu X, Jin P, Su W, Weng Y, Yu D, He S, Fu M, Hou C, Pan X, Wang W, Zhang YY, ... Ming R, et al. Molecular mechanism of vivipary as revealed by the genomes of viviparous mangroves and non-viviparous relatives. Current Biology : Cb. PMID 39079534 DOI: 10.1016/j.cub.2024.07.010 |
0.383 |
|
| 2023 |
Deng Y, Guo L, Lin L, Li Y, Zhang J, Zhang Y, Yuan B, Ke L, Xie B, Ming R. Meiosis in an asymmetric dikaryotic genome of Tremella fuciformis Tr01 facilitates new chromosome formation. Genome Biology. 24: 280. PMID 38053144 DOI: 10.1186/s13059-023-03093-7 |
0.326 |
|
| 2023 |
Wang Y, Jiang C, Zhang X, Yan H, Yin Z, Sun X, Gao F, Zhao Y, Liu W, Han S, Zhang J, Zhang Y, Zhang Z, Zhang H, Li J, ... ... Ming R, et al. Upland rice genomic signatures of adaptation to drought resistance and navigation to molecular design breeding. Plant Biotechnology Journal. PMID 37909415 DOI: 10.1111/pbi.14215 |
0.349 |
|
| 2023 |
Huang Y, He J, Xu Y, Zheng W, Wang S, Chen P, Zeng B, Yang S, Jiang X, Liu Z, Wang L, Wang X, Liu S, Lu Z, Liu Z, ... ... Ming R, et al. Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. Nature Genetics. PMID 37783780 DOI: 10.1038/s41588-023-01516-6 |
0.315 |
|
| 2023 |
Yue J, Krasovec M, Kazama Y, Zhang X, Xie W, Zhang S, Xu X, Kan B, Ming R, Filatov DA. The origin and evolution of sex chromosomes, revealed by sequencing of the Silene latifolia female genome. Current Biology : Cb. PMID 37290443 DOI: 10.1016/j.cub.2023.05.046 |
0.492 |
|
| 2023 |
Zheng H, Wang B, Hua X, Gao R, Wang Y, Zhang Z, Zhang Y, Mei J, Huang Y, Huang Y, Lin H, Zhang X, Lin D, Lan S, Liu Z, ... ... Ming R, et al. A near-complete genome assembly of the allotetrapolyploid Cenchrus fungigraminus (JUJUNCAO) provides insights into its evolution and C4 photosynthesis. Plant Communications. 100633. PMID 37271992 DOI: 10.1016/j.xplc.2023.100633 |
0.354 |
|
| 2023 |
Wang T, Wang B, Hua X, Tang H, Zhang Z, Gao R, Qi Y, Zhang Q, Wang G, Yu Z, Huang Y, Zhang Z, Mei J, Wang Y, Zhang Y, ... ... Ming R, et al. A complete gap-free diploid genome in Saccharum complex and the genomic footprints of evolution in the highly polyploid Saccharum genus. Nature Plants. PMID 36997685 DOI: 10.1038/s41477-023-01378-0 |
0.409 |
|
| 2022 |
Shearman JR, Pootakham W, Sonthirod C, Naktang C, Yoocha T, Sangsrakru D, Jomchai N, Tongsima S, Piriyapongsa J, Ngamphiw C, Wanasen N, Ukoskit K, Punpee P, Klomsa-Ard P, Sriroth K, ... ... Ming R, et al. A draft chromosome-scale genome assembly of a commercial sugarcane. Scientific Reports. 12: 20474. PMID 36443360 DOI: 10.1038/s41598-022-24823-0 |
0.354 |
|
| 2022 |
Kafkas S, Ma X, Zhang X, Topçu H, Navajas-Pérez R, Wai CM, Tang H, Xu X, Khodaeiaminjan M, Güney M, Paizila A, Karcı H, Zhang X, Lin J, Lin H, ... ... Ming R, et al. The Pistachio Genomes Provide Insights into Nut Tree Domestication and ZW Sex Chromosome Evolution. Plant Communications. 100497. PMID 36435969 DOI: 10.1016/j.xplc.2022.100497 |
0.5 |
|
| 2022 |
Zerpa-Catanho D, Clough SJ, Ming R. Characterization and analysis of the promoter region of monodehydroascorbate reductase 4 (CpMDAR4) in papaya. Plant Reproduction. PMID 35920937 DOI: 10.1007/s00497-022-00447-2 |
0.303 |
|
| 2022 |
Zhang Q, Qi Y, Pan H, Tang H, Wang G, Hua X, Wang Y, Lin L, Li Z, Li Y, Yu F, Yu Z, Huang Y, Wang T, Ma P, ... ... Ming R, et al. Genomic insights into the recent chromosome reduction of autopolyploid sugarcane Saccharum spontaneum. Nature Genetics. PMID 35654976 DOI: 10.1038/s41588-022-01084-1 |
0.37 |
|
| 2022 |
Yue J, VanBuren R, Liu J, Fang J, Zhang X, Liao Z, Wai CM, Xu X, Chen S, Zhang S, Ma X, Ma Y, Yu H, Lin J, Zhou P, ... ... Ming R, et al. SunUp and Sunset genomes revealed impact of particle bombardment mediated transformation and domestication history in papaya. Nature Genetics. PMID 35551309 DOI: 10.1038/s41588-022-01068-1 |
0.431 |
|
| 2022 |
Huang X, Wang W, Gong T, Wickell D, Kuo LY, Zhang X, Wen J, Kim H, Lu F, Zhao H, Chen S, Li H, Wu W, Yu C, Chen S, ... ... Ming R, et al. The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence. Nature Plants. PMID 35534720 DOI: 10.1038/s41477-022-01146-6 |
0.332 |
|
| 2022 |
Zheng P, Sun H, Liu J, Lin J, Zhang X, Qin Y, Zhang W, Xu X, Deng X, Yang D, Wang M, Zhang Y, Song H, Huang Y, Orozco-Obando W, ... Ming R, et al. Comparative analyses of American and Asian lotus genomes reveal insights into petal color, carpel thermogenesis and domestication. The Plant Journal : For Cell and Molecular Biology. PMID 35362164 DOI: 10.1111/tpj.15753 |
0.37 |
|
| 2022 |
Ma X, Yu L, Fatima M, Wadlington WH, Hulse-Kemp AM, Zhang X, Zhang S, Xu X, Wang J, Huang H, Lin J, Deng B, Liao Z, Yang Z, Ma Y, ... ... Ming R, et al. The spinach YY genome reveals sex chromosome evolution, domestication, and introgression history of the species. Genome Biology. 23: 75. PMID 35255946 DOI: 10.1186/s13059-022-02633-x |
0.41 |
|
| 2022 |
Wang B, Hu W, Fang Y, Feng X, Fang J, Zou T, Zheng S, Ming R, Zhang J. Comparative Analysis of the MADS-Box Genes Revealed Their Potential Functions for Flower and Fruit Development in Longan (). Frontiers in Plant Science. 12: 813798. PMID 35154209 DOI: 10.3389/fpls.2021.813798 |
0.304 |
|
| 2022 |
Zhou P, Zhang X, Ma X, Yue J, Liao Z, Ming R. Methylation related genes affect sex differentiation in dioecious and gynodioecious papaya. Horticulture Research. PMID 35048102 DOI: 10.1093/hr/uhab065 |
0.365 |
|
| 2022 |
Lin J, Zhang W, Zhang X, Ma X, Zhang S, Chen S, Wang Y, Jia H, Liao Z, Lin J, Zhu M, Xu X, Cai M, Zeng H, Wan J, ... ... Ming R, et al. Signatures of selection in recently domesticated macadamia. Nature Communications. 13: 242. PMID 35017544 DOI: 10.1038/s41467-021-27937-7 |
0.398 |
|
| 2022 |
Hu G, Feng J, Xiang X, Wang J, Salojärvi J, Liu C, Wu Z, Zhang J, Liang X, Jiang Z, Liu W, Ou L, Li J, Fan G, Mai Y, ... ... Ming R, et al. Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars. Nature Genetics. PMID 34980919 DOI: 10.1038/s41588-021-00971-3 |
0.346 |
|
| 2021 |
Hu W, Ji C, Liang Z, Ye J, Ou W, Ding Z, Zhou G, Tie W, Yan Y, Yang J, Ma L, Yang X, Wei Y, Jin Z, Xie J, ... ... Ming R, et al. Resequencing of 388 cassava accessions identifies valuable loci and selection for variation in heterozygosity. Genome Biology. 22: 316. PMID 34784936 DOI: 10.1186/s13059-021-02524-7 |
0.338 |
|
| 2021 |
Zhang W, Lin J, Li J, Zheng S, Zhang X, Chen S, Ma X, Dong F, Jia H, Xu X, Yang Z, Ma P, Deng F, Deng B, Huang Y, ... ... Ming R, et al. Rambutan genome revealed gene networks for spine formation and aril development. The Plant Journal : For Cell and Molecular Biology. PMID 34519122 DOI: 10.1111/tpj.15491 |
0.42 |
|
| 2021 |
Yu L, Ma X, Wadlington W, Ming R. Identification of structural variation and polymorphisms of a sex co-segregating scaffold in spinach. Plant Reproduction. PMID 34319458 DOI: 10.1007/s00497-021-00424-1 |
0.51 |
|
| 2021 |
Zhang X, Chen S, Shi L, Gong D, Zhang S, Zhao Q, Zhan D, Vasseur L, Wang Y, Yu J, Liao Z, Xu X, Qi R, Wang W, Ma Y, ... ... Ming R, et al. Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis. Nature Genetics. PMID 34267370 DOI: 10.1038/s41588-021-00895-y |
0.325 |
|
| 2021 |
Liu J, Chen LY, Zhou P, Liao Z, Lin H, Yu Q, Ming R. Sex biased expression of hormone related genes at early stage of sex differentiation in papaya flowers. Horticulture Research. 8: 147. PMID 34193826 DOI: 10.1038/s41438-021-00581-4 |
0.328 |
|
| 2021 |
Zhang L, Ma X, Zhang X, Xu Y, Ibrahim AK, Yao J, Huang H, Chen S, Liao Z, Zhang Q, Niyitanga S, Yu J, Liu Y, Xu X, Wang J, ... ... Ming R, et al. Reference genomes of the two cultivated jute species. Plant Biotechnology Journal. PMID 34170619 DOI: 10.1111/pbi.13652 |
0.363 |
|
| 2021 |
Wang L, Huang Y, Liu Z, He J, Jiang X, He F, Lu Z, Yang S, Chen P, Yu H, Zeng B, Ke L, Xie Z, Larkin RM, Jiang D, ... Ming R, et al. Somatic variations led to the selection of acidic and acidless orange cultivars. Nature Plants. PMID 34140668 DOI: 10.1038/s41477-021-00941-x |
0.401 |
|
| 2021 |
Liao Z, Zhang X, Zhang S, Lin Z, Zhang X, Ming R. Structural variations in papaya genomes. Bmc Genomics. 22: 335. PMID 33971825 DOI: 10.1186/s12864-021-07665-4 |
0.301 |
|
| 2021 |
Zhang G, Ge C, Xu P, Wang S, Cheng S, Han Y, Wang Y, Zhuang Y, Hou X, Yu T, Xu X, Deng S, Li Q, Yang Y, Yin X, ... ... Ming R, et al. The reference genome of Miscanthus floridulus illuminates the evolution of Saccharinae. Nature Plants. PMID 33958777 DOI: 10.1038/s41477-021-00908-y |
0.391 |
|
| 2021 |
Hu W, Ji C, Shi H, Liang Z, Ding Z, Ye J, Ou W, Zhou G, Tie W, Yan Y, Yang J, Yang X, Wei Y, Jin Z, Xie J, ... ... Ming R, et al. Allele-defined Genome Reveals Biallelic Differentiation during Cassava Evolution. Molecular Plant. PMID 33866024 DOI: 10.1016/j.molp.2021.04.009 |
0.314 |
|
| 2021 |
Wang G, Chen L, Tang W, Wang Y, Zhang Q, Wang H, Zhou X, Wu H, Guo L, Dou M, Liu L, Wang B, Lin J, Xie B, Wang Z, ... ... Ming R, et al. Identifying a melanogenesis-related candidate gene by a high-quality genome assembly and population diversity analysis in Hypsizygus marmoreus. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 33744162 DOI: 10.1016/j.jgg.2021.01.002 |
0.412 |
|
| 2021 |
Liu J, Han J, Sharma A, Wai CM, Ming R, Yu Q. Transcriptional regulation of dosage compensation in Carica papaya. Scientific Reports. 11: 5854. PMID 33712672 DOI: 10.1038/s41598-021-85480-3 |
0.602 |
|
| 2021 |
Chen S, Li R, Ma Y, Lei S, Ming R, Zhang X. The complete chloroplast genome sequence of cultivar Tieguanyin (Theaceae). Mitochondrial Dna. Part B, Resources. 6: 395-396. PMID 33659690 DOI: 10.1080/23802359.2020.1869615 |
0.403 |
|
| 2021 |
Dong F, Lin Z, Lin J, Ming R, Zhang W. Chloroplast Genome of Rambutan and Comparative Analyses in Sapindaceae. Plants (Basel, Switzerland). 10. PMID 33540810 DOI: 10.3390/plants10020283 |
0.387 |
|
| 2021 |
Wang G, Zhang X, Herre EA, McKey D, Machado CA, Yu WB, Cannon CH, Arnold ML, Pereira RAS, Ming R, Liu YF, Wang Y, Ma D, Chen J. Genomic evidence of prevalent hybridization throughout the evolutionary history of the fig-wasp pollination mutualism. Nature Communications. 12: 718. PMID 33531484 DOI: 10.1038/s41467-021-20957-3 |
0.309 |
|
| 2020 |
Wang Y, Xin H, Fan P, Zhang J, Liu Y, Dong Y, Wang Z, Yang Y, Zhang Q, Ming R, Zhong GY, Li S, Liang Z. The genome of Shanputao (Vitis amurensis) provides a new insight into cold tolerance of grapevine. The Plant Journal : For Cell and Molecular Biology. PMID 33300184 DOI: 10.1111/tpj.15127 |
0.429 |
|
| 2020 |
Fatima M, Zhang X, Lin J, Zhou P, Zhou D, Ming R. Expression profiling of MADS-box gene family revealed its role in vegetative development and stem ripening in S. spontaneum. Scientific Reports. 10: 20536. PMID 33239664 DOI: 10.1038/s41598-020-77375-6 |
0.359 |
|
| 2020 |
Chen D, Zhang Q, Tang W, Huang Z, Wang G, Wang Y, Shi J, Xu H, Lin L, Li Z, Chi W, Huang L, Xia J, Zhang X, Guo L, ... ... Ming R, et al. The evolutionary origin and domestication history of goldfish (). Proceedings of the National Academy of Sciences of the United States of America. PMID 33139555 DOI: 10.1073/pnas.2005545117 |
0.347 |
|
| 2020 |
Zhang X, Wang G, Zhang S, Chen S, Wang Y, Wen P, Ma X, Shi Y, Qi R, Yang Y, Liao Z, Lin J, Lin J, Xu X, Chen X, ... ... Ming R, et al. Genomes of the Banyan Tree and Pollinator Wasp Provide Insights into Fig-Wasp Coevolution. Cell. PMID 33035453 DOI: 10.1016/j.cell.2020.09.043 |
0.345 |
|
| 2020 |
Lin Z, Zhou P, Ma X, Deng Y, Liao Z, Li R, Ming R. Comparative analysis of chloroplast genomes in Vasconcellea pubescens A.DC. and Carica papaya L. Scientific Reports. 10: 15799. PMID 32978465 DOI: 10.1038/s41598-020-72769-y |
0.358 |
|
| 2020 |
Yu L, Ma X, Deng B, Yue J, Ming R. Construction of high-density genetic maps defined sex determination region of the Y chromosome in spinach. Molecular Genetics and Genomics : Mgg. PMID 32955620 DOI: 10.1007/S00438-020-01723-4 |
0.47 |
|
| 2020 |
Ma P, Zhang X, Chen L, Zhao Q, Zhang Q, Hua X, Wang Z, Tang H, Yu Q, Zhang M, Ming R, Zhang J. Comparative analysis of sucrose phosphate synthase (SPS) gene family between Saccharum officinarum and Saccharum spontaneum. Bmc Plant Biology. 20: 422. PMID 32928111 DOI: 10.1186/S12870-020-02599-7 |
0.406 |
|
| 2020 |
De La Harpe M, Paris M, Hess J, Barfuss MHJ, Serrano-Serrano ML, Ghatak A, Chaturvedi P, Weckwerth W, Till W, Salamin N, Wai CM, Ming R, Lexer C. Genomic footprints of repeated evolution of CAM photosynthesis in a Neotropical species radiation. Plant, Cell & Environment. PMID 32677061 DOI: 10.1111/Pce.13847 |
0.386 |
|
| 2020 |
Deng Y, Zhang X, Xie B, Lin L, Hsiang T, Lin X, Lin Y, Zhang X, Ma Y, Miao W, Ming R. Intra-specific comparison of mitochondrial genomes reveals host gene fragment exchange via intron mobility in Tremella fuciformis. Bmc Genomics. 21: 426. PMID 32580700 DOI: 10.1186/S12864-020-06846-X |
0.392 |
|
| 2020 |
Fang J, Wood AM, Chen Y, Yue J, Ming R. Genomic variation between PRSV resistant transgenic SunUp and its progenitor cultivar Sunset. Bmc Genomics. 21: 398. PMID 32532215 DOI: 10.1186/S12864-020-06804-7 |
0.372 |
|
| 2020 |
Zhou P, Zhang X, Fatima M, Ma X, Fang H, Yan H, Ming R. DNA methylome and transcriptome landscapes revealed differential characteristics of dioecious flowers in papaya. Horticulture Research. 7: 81. PMID 32528693 DOI: 10.1038/S41438-020-0298-0 |
0.38 |
|
| 2020 |
Zhang L, Xu Y, Zhang X, Ma X, Zhang L, Liao Z, Zhang Q, Wan X, Cheng Y, Zhang J, Li D, Zhang L, Xu J, Tao A, Lin L, ... ... Ming R, et al. The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fiber and leaf shape biogenesis. Plant Biotechnology Journal. PMID 31975524 DOI: 10.1111/Pbi.13341 |
0.462 |
|
| 2020 |
Cai M, Lin J, Li Z, Lin Z, Ma Y, Wang Y, Ming R. Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane. Plos One. 15: e0227716. PMID 31945094 DOI: 10.1371/Journal.Pone.0227716 |
0.334 |
|
| 2020 |
Chen LY, Xin Y, Wai CM, Liu J, Ming R. The role of -elements in the evolution of crassulacean acid metabolism photosynthesis. Horticulture Research. 7: 5. PMID 31908808 DOI: 10.1038/S41438-019-0229-0 |
0.371 |
|
| 2020 |
Zhang X, Fatima M, Zhou P, Ma Q, Ming R. Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple. Bmc Genomics. 21: 8. PMID 31896347 DOI: 10.1186/S12864-019-6421-7 |
0.349 |
|
| 2020 |
Xiao N, Wang H, Yao W, Zhang M, Ming R, Zhang J. Development and Evaluation of SSR Markers Based on Large Scale Full-Length Transcriptome Sequencing in Sugarcane Tropical Plant Biology. 1-10. DOI: 10.1007/S12042-020-09260-5 |
0.339 |
|
| 2019 |
Ma X, Lin H, Chen Y, Lan S, Ming R. The complete chloroplast genome of a gynodioecious deciduous orchid (Orchidaceae) female. Mitochondrial Dna. Part B, Resources. 4: 3876-3877. PMID 33366230 DOI: 10.1080/23802359.2019.1687359 |
0.492 |
|
| 2019 |
Li Z, Hua X, Zhong W, Yuan Y, Wang Y, Wang Z, Ming R, Zhang J. Genome-Wide Identification and Expression Profile Analysis of WRKY Family Genes in the Autopolyploid Saccharum spontaneum. Plant & Cell Physiology. PMID 31830269 DOI: 10.1093/Pcp/Pcz227 |
0.467 |
|
| 2019 |
Zerpa-Catanho D, Wai J, Wang ML, Yu L, Nguyen J, Ming R. Differential gene expression among three sex types reveals a MALE STERILITY 1 (CpMS1) for sex differentiation in papaya. Bmc Plant Biology. 19: 545. PMID 31818257 DOI: 10.1186/S12870-019-2169-0 |
0.472 |
|
| 2019 |
Souza GM, Van Sluys MA, Lembke CG, Lee H, Margarido GRA, Hotta CT, Gaiarsa JW, Diniz AL, Oliveira MM, Ferreira SS, Nishiyama MY, Ten-Caten F, Ragagnin GT, Andrade PM, de Souza RF, ... ... Ming R, et al. Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. Gigascience. 8. PMID 31782791 DOI: 10.1093/Gigascience/Giz129 |
0.513 |
|
| 2019 |
Wang Y, Singh R, Tong E, Tang M, Zheng L, Fang H, Li R, Guo L, Song J, Srinivasan R, Sharma A, Lin L, Trujillo JA, Manshardt R, Chen LY, ... Ming R, et al. Positional cloning and characterization of the papaya diminutive mutant reveal a truncating mutation in CpMMS19 gene. The New Phytologist. PMID 31733154 DOI: 10.1111/Nph.16325 |
0.403 |
|
| 2019 |
Zhou P, Fatima M, Ma X, Liu J, Ming R. Auxin regulation involved in gynoecium morphogenesis of papaya flowers. Horticulture Research. 6: 119. PMID 31700646 DOI: 10.1038/S41438-019-0205-8 |
0.347 |
|
| 2019 |
Wang G, Lin J, Shi Y, Chang X, Wang Y, Guo L, Wang W, Dou M, Deng Y, Ming R, Zhang J. Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya. Bmc Genomics. 20: 765. PMID 31640544 DOI: 10.1186/S12864-019-6133-Z |
0.317 |
|
| 2019 |
Chen LY, VanBuren R, Paris M, Zhou H, Zhang X, Wai CM, Yan H, Chen S, Alonge M, Ramakrishnan S, Liao Z, Liu J, Lin J, Yue J, Fatima M, ... ... Ming R, et al. The bracteatus pineapple genome and domestication of clonally propagated crops. Nature Genetics. PMID 31570895 DOI: 10.1038/S41588-019-0506-8 |
0.475 |
|
| 2019 |
Zhang X, Zhang S, Zhao Q, Ming R, Tang H. Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data. Nature Plants. PMID 31383970 DOI: 10.1038/S41477-019-0487-8 |
0.506 |
|
| 2019 |
Zhou D, Shen Y, Zhou P, Fatima M, Lin J, Yue J, Zhang X, Chen LY, Ming R. Papaya regulate carotenoid biosynthesis-related genes during papaya fruit ripening. Horticulture Research. 6: 80. PMID 31263564 DOI: 10.1038/S41438-019-0162-2 |
0.338 |
|
| 2019 |
Zhuang W, Chen H, Yang M, Wang J, Pandey MK, Zhang C, Chang WC, Zhang L, Zhang X, Tang R, Garg V, Wang X, Tang H, Chow CN, Wang J, ... ... Ming R, et al. The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics. PMID 31043757 DOI: 10.1038/S41588-019-0402-2 |
0.484 |
|
| 2019 |
Wang Y, Hua X, Xu J, Chen Z, Fan T, Zeng Z, Wang H, Hour AL, Yu Q, Ming R, Zhang J. Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum. Bmc Genomics. 20: 83. PMID 30678642 DOI: 10.1186/S12864-019-5437-3 |
0.392 |
|
| 2019 |
Zhang W, Lin J, Dong F, Ma Q, Wu S, Ma X, Fatima M, Jia H, Ming R. Genomic and Allelic Analyses of Laccase Genes in Sugarcane (Saccharum spontaneum L.) Tropical Plant Biology. 12: 219-229. DOI: 10.1007/S12042-019-09239-X |
0.428 |
|
| 2019 |
Lin J, Zhu M, Cai M, Zhang W, Fatima M, Jia H, Li F, Ming R. Identification and Expression Analysis of TCP Genes in Saccharum spontaneum L Tropical Plant Biology. 12: 206-218. DOI: 10.1007/S12042-019-09238-Y |
0.449 |
|
| 2019 |
Ma P, Yuan Y, Shen Q, Jiang Q, Hua X, Zhang Q, Zhang M, Ming R, Zhang J. Evolution and Expression Analysis of Starch Synthase Gene Families in Saccharum spontaneum Tropical Plant Biology. 12: 158-173. DOI: 10.1007/S12042-019-09225-3 |
0.383 |
|
| 2019 |
Wang J, Li Y, Zhu F, Ming R, Chen L. Genome-Wide Analysis of Nitrate Transporter (NRT/NPF) Family in Sugarcane Saccharum spontaneum L. Tropical Plant Biology. 12: 133-149. DOI: 10.1007/S12042-019-09220-8 |
0.43 |
|
| 2019 |
Tran H, Kanzaki S, Triest L, Hormaza I, Kuk NJ, Ming R, Bousquet J, Khasa D, Van Damme P. Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites Genetic Resources and Crop Evolution. 66: 1653-1669. DOI: 10.1007/S10722-019-00837-Y |
0.303 |
|
| 2018 |
Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, ... ... Ming R, et al. Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics. PMID 30425353 DOI: 10.1038/S41588-018-0293-7 |
0.559 |
|
| 2018 |
Sharma A, Song J, Lin Q, Singh R, Ramos N, Wang K, Zhang J, Ming R, Yu Q. Comparative Analysis of Homologous Sequences of and Reveals Independent Polyploidization Events. Frontiers in Plant Science. 9: 1414. PMID 30319674 DOI: 10.3389/Fpls.2018.01414 |
0.54 |
|
| 2018 |
Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, ... ... Ming R, et al. Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics. PMID 30297971 DOI: 10.1038/S41588-018-0237-2 |
0.675 |
|
| 2018 |
Deng Y, Hsiang T, Li S, Lin L, Wang Q, Chen Q, Xie B, Ming R. Comparison of the Mitochondrial Genome Sequences of Six Isolates Suggests Short Fragment Insertions as a Potential Factor Leading to Larger Genomic Size. Frontiers in Microbiology. 9: 2079. PMID 30250455 DOI: 10.3389/Fmicb.2018.02079 |
0.455 |
|
| 2018 |
Xu H, Yu Q, Shi Y, Hua X, Tang H, Yang L, Ming R, Zhang J. PGD: Pineapple Genomics Database. Horticulture Research. 5: 66. PMID 30245835 DOI: 10.1038/s41438-018-0078-2 |
0.326 |
|
| 2018 |
Yang X, Song J, Todd J, Peng Z, Paudel D, Luo Z, Ma X, You Q, Hanson E, Zhao Z, Zhao Y, Zhang J, Ming R, Wang J. Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a "sweet" crop with "bitter" genomes. Plant Biotechnology Journal. PMID 30051590 DOI: 10.1111/pbi.12992 |
0.393 |
|
| 2018 |
Wadlington WH, Ming R. Development of an X-specific marker and identification of YY individuals in spinach. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 29971471 DOI: 10.1007/S00122-018-3127-1 |
0.564 |
|
| 2018 |
Zhang J, Zhang Q, Li L, Tang H, Zhang Q, Chen Y, Arro J, Zhang X, Wang A, Miao C, Ming R. Recent Polyploidization Events in Three Saccharum Founding Species. Plant Biotechnology Journal. PMID 29878497 DOI: 10.1111/pbi.12962 |
0.315 |
|
| 2018 |
Liu J, Chatham L, Aryal R, Yu Q, Ming R. Differential methylation and expression of HUA1 ortholog in three sex types of papaya. Plant Science : An International Journal of Experimental Plant Biology. 272: 99-106. PMID 29807610 DOI: 10.1016/J.Plantsci.2018.04.001 |
0.641 |
|
| 2018 |
Orozco-Arias S, Liu J, Tabares-Soto R, Ceballos D, Silva Domingues D, Garavito A, Ming R, Guyot R. Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics. Biology. 7. PMID 29799487 DOI: 10.3390/biology7020032 |
0.329 |
|
| 2018 |
Dong G, Shen J, Zhang Q, Wang J, Yu Q, Ming R, Wang K, Zhang J. Development and Applications of Chromosome-Specific Cytogenetic BAC-FISH Probes in. Frontiers in Plant Science. 9: 218. PMID 29535742 DOI: 10.3389/Fpls.2018.00218 |
0.523 |
|
| 2018 |
Singh R, Jones T, Wai CM, Jifon J, Nagai C, Ming R, Yu Q. Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane. Scientific Reports. 8: 4415. PMID 29535363 DOI: 10.1038/S41598-018-22798-5 |
0.314 |
|
| 2018 |
Meng Z, Hu X, Zhang Z, Li Z, Lin Q, Yang M, Yang P, Ming R, Yu Q, Wang K. Chromosome Nomenclature and Cytological Characterization of Sacred Lotus. Cytogenetic and Genome Research. PMID 29439256 DOI: 10.1159/000486777 |
0.517 |
|
| 2018 |
Liu J, Sharma A, Niewiara MJ, Singh R, Ming R, Yu Q. Papain-like cysteine proteases in Carica papaya: lineage-specific gene duplication and expansion. Bmc Genomics. 19: 26. PMID 29306330 DOI: 10.1186/S12864-017-4394-Y |
0.399 |
|
| 2018 |
Liu H, Yang X, You Q, Song J, Wang L, Zhang J, Deng Z, Ming R, Wang J. Pedigree, marker recruitment, and genetic diversity of modern sugarcane cultivars in China and the United States Euphytica. 214. DOI: 10.1007/S10681-018-2127-1 |
0.303 |
|
| 2017 |
Yang X, Hu R, Yin H, Jenkins J, Shu S, Tang H, Liu D, Weighill DA, Cheol Yim W, Ha J, Heyduk K, Goodstein DM, Guo HB, Moseley RC, Fitzek E, ... ... Ming R, et al. The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism. Nature Communications. 8: 1899. PMID 29196618 DOI: 10.1038/S41467-017-01491-7 |
0.417 |
|
| 2017 |
Sharma A, Wai CM, Ming R, Yu Q. Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biology and Evolution. 9: 2170-2190. PMID 28922793 DOI: 10.1093/Gbe/Evx161 |
0.35 |
|
| 2017 |
Shen YH, Lu BG, Feng L, Yang FY, Geng JJ, Ming R, Chen XJ. Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq. Bmc Genomics. 18: 671. PMID 28859626 DOI: 10.1186/S12864-017-4072-0 |
0.333 |
|
| 2017 |
Zeng F, Lian X, Zhang G, Yu X, Bradley CA, Ming R. A comparative genome analysis of Cercospora sojina with other members of the pathogen genus Mycosphaerella on different plant hosts. Genomics Data. 13: 54-63. PMID 28736701 DOI: 10.1016/J.Gdata.2017.07.007 |
0.426 |
|
| 2017 |
Wai CM, VanBuren R, Zhang J, Huang L, Miao W, Edger PP, Yim WC, Priest HD, Meyers BC, Mockler T, Smith JAC, Cushman JC, Ming R. Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple. The Plant Journal : For Cell and Molecular Biology. PMID 28670834 DOI: 10.1111/Tpj.13630 |
0.33 |
|
| 2017 |
Qin G, Xu C, Ming R, Tang H, Guyot R, Kramer EM, Hu Y, Yi X, Qi Y, Xu X, Gao Z, Pan H, Jian J, Tian Y, Yue Z, et al. The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis. The Plant Journal : For Cell and Molecular Biology. PMID 28654223 DOI: 10.1111/Tpj.13625 |
0.5 |
|
| 2017 |
Zeng F, Wang C, Zhang G, Wei J, Bradley CA, Ming R. Draft genome sequence of Cercospora sojina isolate S9, a fungus causing frogeye leaf spot (FLS) disease of soybean. Genomics Data. 12: 79-80. PMID 28386531 DOI: 10.1016/J.Gdata.2017.02.014 |
0.423 |
|
| 2017 |
Chen Y, Zhang Q, Hu W, Zhang X, Wang L, Hua X, Yu Q, Ming R, Zhang J. Evolution and expression of the fructokinase gene family in Saccharum. Bmc Genomics. 18: 197. PMID 28222695 DOI: 10.1186/S12864-017-3535-7 |
0.321 |
|
| 2016 |
VanBuren R, Wai CM, Zhang J, Han J, Arro J, Lin Z, Liao Z, Yu Q, Wang ML, Zee F, Moore RC, Charlesworth D, Ming R. Extremely low nucleotide diversity in the X-linked region of papaya caused by a strong selective sweep. Genome Biology. 17: 230. PMID 27890017 DOI: 10.1186/S13059-016-1095-9 |
0.535 |
|
| 2016 |
Ming R, Wai CM, Guyot R. Pineapple Genome: A Reference for Monocots and CAM Photosynthesis. Trends in Genetics : Tig. PMID 27613080 DOI: 10.1016/J.Tig.2016.08.008 |
0.393 |
|
| 2016 |
Fang J, Lin A, Qiu W, Cai H, Umar M, Chen R, Ming R. Transcriptome Profiling Revealed Stress-Induced and Disease Resistance Genes Up-Regulated in PRSV Resistant Transgenic Papaya. Frontiers in Plant Science. 7: 855. PMID 27379138 DOI: 10.3389/Fpls.2016.00855 |
0.387 |
|
| 2016 |
Deng Y, Zhang Q, Ming R, Lin L, Lin X, Lin Y, Li X, Xie B, Wen Z. Analysis of the Mitochondrial Genome in Hypomyces aurantius Reveals a Novel Twintron Complex in Fungi. International Journal of Molecular Sciences. 17. PMID 27376282 DOI: 10.3390/Ijms17071049 |
0.443 |
|
| 2016 |
Zhang J, Sharma A, Yu Q, Wang J, Li L, Zhu L, Zhang X, Chen Y, Ming R. Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum. Bmc Genomics. 17: 446. PMID 27287040 DOI: 10.1186/S12864-016-2817-9 |
0.526 |
|
| 2016 |
Zhang Q, Hu W, Zhu F, Wang L, Yu Q, Ming R, Zhang J. Structure, phylogeny, allelic haplotypes and expression of sucrose transporter gene families in Saccharum. Bmc Genomics. 17: 88. PMID 26830680 DOI: 10.1186/S12864-016-2419-6 |
0.352 |
|
| 2016 |
Wai CM, Powell B, Ming R, Min XJ. Analysis of Alternative Splicing Landscape in Pineapple (Ananas comosus) Tropical Plant Biology. 1-11. DOI: 10.1007/S12042-016-9168-1 |
0.451 |
|
| 2016 |
Singh R, Ming R, Yu Q. Comparative Analysis of GC Content Variations in Plant Genomes Tropical Plant Biology. 1-14. DOI: 10.1007/S12042-016-9165-4 |
0.458 |
|
| 2016 |
Fang J, Miao C, Chen R, Ming R. Genome-Wide Comparative Analysis of Microsatellites in Pineapple Tropical Plant Biology. 9: 117-135. DOI: 10.1007/S12042-016-9163-6 |
0.477 |
|
| 2015 |
Zhang L, Ming R, Zhang J, Tao A, Fang P, Qi J. De novo transcriptome sequence and identification of major bast-related genes involved in cellulose biosynthesis in jute (Corchorus capsularis L.). Bmc Genomics. 16: 1062. PMID 26666317 DOI: 10.1186/S12864-015-2256-Z |
0.382 |
|
| 2015 |
Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, et al. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47: 1435-42. PMID 26523774 DOI: 10.1038/Ng.3435 |
0.488 |
|
| 2015 |
Sabath N, Goldberg EE, Glick L, Einhorn M, Ashman TL, Ming R, Otto SP, Vamosi JC, Mayrose I. Dioecy does not consistently accelerate or slow lineage diversification across multiple genera of angiosperms. The New Phytologist. PMID 26467174 DOI: 10.1111/Nph.13696 |
0.329 |
|
| 2015 |
VanBuren R, Zeng F, Chen C, Zhang J, Wai CM, Han J, Aryal R, Gschwend AR, Wang J, Na JK, Huang L, Zhang L, Miao W, Gou J, Arro J, ... ... Ming R, et al. Origin and domestication of papaya Yh chromosome. Genome Research. 25: 524-33. PMID 25762551 DOI: 10.1101/Gr.183905.114 |
0.808 |
|
| 2015 |
Ming R, Man Wai C. Assembling allopolyploid genomes: no longer formidable. Genome Biology. 16: 27. PMID 25723730 DOI: 10.1186/s13059-015-0585-5 |
0.328 |
|
| 2015 |
Tang H, Zhang X, Miao C, Zhang J, Ming R, Schnable JC, Schnable PS, Lyons E, Lu J. ALLMAPS: robust scaffold ordering based on multiple maps. Genome Biology. 16: 3. PMID 25583564 DOI: 10.1186/S13059-014-0573-1 |
0.404 |
|
| 2015 |
Iovene M, Yu Q, Ming R, Jiang J. Evidence for emergence of sex-determining gene(s) in a centromeric region in Vasconcellea parviflora. Genetics. 199: 413-21. PMID 25480779 DOI: 10.1534/genetics.114.173021 |
0.427 |
|
| 2014 |
Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, ... ... Ming R, et al. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science (New York, N.Y.). 345: 1181-4. PMID 25190796 DOI: 10.1126/Science.1255274 |
0.393 |
|
| 2014 |
Bachtrog D, Mank JE, Peichel CL, Kirkpatrick M, Otto SP, Ashman TL, Hahn MW, Kitano J, Mayrose I, Ming R, Perrin N, Ross L, Valenzuela N, Vamosi JC. Sex determination: why so many ways of doing it? Plos Biology. 12: e1001899. PMID 24983465 DOI: 10.1371/Journal.Pbio.1001899 |
0.419 |
|
| 2014 |
Berdan EL, Kozak GM, Ming R, Rayburn AL, Kiehart R, Fuller RC. Insight into genomic changes accompanying divergence: genetic linkage maps and synteny of Lucania goodei and L. parva reveal a Robertsonian fusion. G3 (Bethesda, Md.). 4: 1363-72. PMID 24898707 DOI: 10.1534/G3.114.012096 |
0.44 |
|
| 2014 |
Na JK, Wang J, Ming R. Accumulation of interspersed and sex-specific repeats in the non-recombining region of papaya sex chromosomes. Bmc Genomics. 15: 335. PMID 24885930 DOI: 10.1186/1471-2164-15-335 |
0.426 |
|
| 2014 |
Zhang Q, Li L, VanBuren R, Liu Y, Yang M, Xu L, Bowers JE, Zhong C, Han Y, Li S, Ming R. Optimization of linkage mapping strategy and construction of a high-density American lotus linkage map. Bmc Genomics. 15: 372. PMID 24885335 DOI: 10.1186/1471-2164-15-372 |
0.382 |
|
| 2014 |
Zhang J, Liu J, Ming R. Genomic analyses of the CAM plant pineapple. Journal of Experimental Botany. 65: 3395-404. PMID 24692645 DOI: 10.1093/Jxb/Eru101 |
0.467 |
|
| 2014 |
Zhang J, Boualem A, Bendahmane A, Ming R. Genomics of sex determination. Current Opinion in Plant Biology. 18: 110-6. PMID 24682067 DOI: 10.1016/J.Pbi.2014.02.012 |
0.512 |
|
| 2014 |
Aryal R, Ming R. Sex determination in flowering plants: papaya as a model system. Plant Science : An International Journal of Experimental Plant Biology. 217: 56-62. PMID 24467896 DOI: 10.1016/J.Plantsci.2013.10.018 |
0.718 |
|
| 2014 |
Aryal R, Jagadeeswaran G, Zheng Y, Yu Q, Sunkar R, Ming R. Sex specific expression and distribution of small RNAs in papaya. Bmc Genomics. 15: 20. PMID 24410969 DOI: 10.1186/1471-2164-15-20 |
0.673 |
|
| 2014 |
Han J, Murray JE, Yu Q, Moore PH, Ming R. The effects of gibberellic acid on sex expression and secondary sexual characteristics in papaya Hortscience. 49: 378-383. DOI: 10.21273/Hortsci.49.3.378 |
0.485 |
|
| 2014 |
Ashman TL, Bachtrog D, Blackmon H, Goldberg EE, Hahn MW, Kirkpatrick M, Kitano J, Mank JE, Mayrose I, Ming R, Otto SP, Peichel CL, Pennell MW, Perrin N, Ross L, et al. Tree of Sex: A database of sexual systems Scientific Data. 1. DOI: 10.1038/Sdata.2014.15 |
0.369 |
|
| 2014 |
Li J, Tang H, Bowers JE, Ming R, Paterson AH. Insights into the Common Ancestor of Eudicots Advances in Botanical Research. 69: 137-174. DOI: 10.1016/B978-0-12-417163-3.00006-8 |
0.468 |
|
| 2014 |
Zeng F, Yu Q, Hou S, Moore PH, Alam M, Ming R. Features of transcriptome in trioecious papaya revealed by a large-scale sequencing of ESTs and comparative analysis in higher plants Plant Omics. 7: 450-460. |
0.437 |
|
| 2013 |
Zhu L, Zhang J, Chen Y, Pan H, Ming R. Identification and genes expression analysis of ATP-dependent phosphofructokinase family members among three Saccharum species. Functional Plant Biology : Fpb. 40: 369-378. PMID 32481114 DOI: 10.1071/Fp12182 |
0.422 |
|
| 2013 |
Vanburen R, Ming R. Dynamic transposable element accumulation in the nascent sex chromosomes of papaya. Mobile Genetic Elements. 3: e23462. PMID 23734293 DOI: 10.4161/Mge.23462 |
0.528 |
|
| 2013 |
Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, et al. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology. 14: R41. PMID 23663246 DOI: 10.1186/Gb-2013-14-5-R41 |
0.728 |
|
| 2013 |
VanBuren R, Ming R. Organelle DNA accumulation in the recently evolved papaya sex chromosomes. Molecular Genetics and Genomics : Mgg. 288: 277-84. PMID 23636354 DOI: 10.1007/S00438-013-0747-7 |
0.552 |
|
| 2013 |
Wu J, Wang Z, Shi Z, Zhang S, Ming R, Zhu S, Khan MA, Tao S, Korban SS, Wang H, Chen NJ, Nishio T, Xu X, Cong L, Qi K, et al. The genome of the pear (Pyrus bretschneideri Rehd.). Genome Research. 23: 396-408. PMID 23149293 DOI: 10.1101/Gr.144311.112 |
0.544 |
|
| 2013 |
Zhu L, Zhang J, Chen Y, Pan H, Ming R. Identification and genes expression analysis of ATP-dependent phosphofructokinase family members among three Saccharum species Functional Plant Biology. 40: 369-378. DOI: 10.1071/FP12182 |
0.31 |
|
| 2013 |
Singh R, Ming R, Yu Q. Nucleotide Composition of the Nelumbo nucifera Genome Tropical Plant Biology. 6: 85-97. DOI: 10.1007/S12042-013-9123-3 |
0.335 |
|
| 2013 |
Jia RZ, Ming R, Zhu YJ. Genome-Wide Analysis of Nucleotide-Binding Site (NBS) Disease Resistance (R) Genes in Sacred Lotus (Nelumbo nucifera Gaertn.) Reveals Their Transition Role During Early Evolution of Land Plants Tropical Plant Biology. 6: 98-116. DOI: 10.1007/S12042-013-9122-4 |
0.407 |
|
| 2013 |
Xin H, Zhang J, Zhu W, Wang N, Fang P, Han Y, Ming R, Li S. The effects of artificial selection on sugar metabolism and transporter genes in grape Tree Genetics & Genomes. 9: 1343-1349. DOI: 10.1007/S11295-013-0643-7 |
0.373 |
|
| 2013 |
Gschwend AR, Wai CM, Zee F, Arumuganathan AK, Ming R. Genome size variation among sex types in dioecious and trioecious Caricaceae species Euphytica. 189: 461-469. DOI: 10.1007/S10681-012-0815-9 |
0.768 |
|
| 2012 |
Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R. Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya. Bmc Genomics. 13: 682. PMID 23216749 DOI: 10.1186/1471-2164-13-682 |
0.587 |
|
| 2012 |
Yang M, Han Y, VanBuren R, Ming R, Xu L, Han Y, Liu Y. Genetic linkage maps for Asian and American lotus constructed using novel SSR markers derived from the genome of sequenced cultivar. Bmc Genomics. 13: 653. PMID 23170872 DOI: 10.1186/1471-2164-13-653 |
0.324 |
|
| 2012 |
Wai CM, Moore PH, Paull RE, Ming R, Yu Q. An integrated cytogenetic and physical map reveals unevenly distributed recombination spots along the papaya sex chromosomes. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 20: 753-67. PMID 23007683 DOI: 10.1007/S10577-012-9312-1 |
0.443 |
|
| 2012 |
Wang J, Na JK, Yu Q, Gschwend AR, Han J, Zeng F, Aryal R, VanBuren R, Murray JE, Zhang W, Navajas-Pérez R, Feltus FA, Lemke C, Tong EJ, Chen C, ... ... Ming R, et al. Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution. Proceedings of the National Academy of Sciences of the United States of America. 109: 13710-5. PMID 22869747 DOI: 10.1073/Pnas.1207833109 |
0.804 |
|
| 2012 |
Gschwend AR, Yu Q, Tong EJ, Zeng F, Han J, VanBuren R, Aryal R, Charlesworth D, Moore PH, Paterson AH, Ming R. Rapid divergence and expansion of the X chromosome in papaya. Proceedings of the National Academy of Sciences of the United States of America. 109: 13716-21. PMID 22869742 DOI: 10.1073/Pnas.1121096109 |
0.806 |
|
| 2012 |
Na JK, Wang J, Murray JE, Gschwend AR, Zhang W, Yu Q, Navajas-Pérez R, Feltus FA, Chen C, Kubat Z, Moore PH, Jiang J, Paterson AH, Ming R. Construction of physical maps for the sex-specific regions of papaya sex chromosomes. Bmc Genomics. 13: 176. PMID 22568889 DOI: 10.1186/1471-2164-13-176 |
0.782 |
|
| 2012 |
Swaminathan K, Chae WB, Mitros T, Varala K, Xie L, Barling A, Glowacka K, Hall M, Jezowski S, Ming R, Hudson M, Juvik JA, Rokhsar DS, Moose SP. A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy. Bmc Genomics. 13: 142. PMID 22524439 DOI: 10.1186/1471-2164-13-142 |
0.444 |
|
| 2012 |
Gschwend AR, Weingartner LA, Moore RC, Ming R. The sex-specific region of sex chromosomes in animals and plants. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 20: 57-69. PMID 22105696 DOI: 10.1007/s10577-011-9255-y |
0.781 |
|
| 2012 |
Ming R, Yu Q, Moore PH, Paull RE, Chen NJ, Wang ML, Zhu YJ, Schuler MA, Jiang J, Paterson AH. Genome of papaya, a fast growing tropical fruit tree Tree Genetics and Genomes. 8: 445-462. DOI: 10.1007/S11295-012-0490-Y |
0.571 |
|
| 2012 |
James BT, Chen C, Rudolph A, Swaminathan K, Murray JE, Na JK, Spence AK, Smith B, Hudson ME, Moose SP, Ming R. Development of microsatellite markers in autopolyploid sugarcane and comparative analysis of conserved microsatellites in sorghum and sugarcane Molecular Breeding. 30: 661-669. DOI: 10.1007/S11032-011-9651-1 |
0.483 |
|
| 2012 |
Blas AL, Yu Q, Veatch OJ, Paull RE, Moore PH, Ming R. Genetic mapping of quantitative trait loci controlling fruit size and shape in papaya Molecular Breeding. 29: 457-466. DOI: 10.1007/S11032-011-9562-1 |
0.342 |
|
| 2012 |
Zhang J, Nagai C, Yu Q, Pan YB, Ayala-Silva T, Schnell RJ, Comstock JC, Arumuganathan AK, Ming R. Genome size variation in three Saccharum species Euphytica. 185: 511-519. DOI: 10.1007/S10681-012-0664-6 |
0.458 |
|
| 2012 |
Ming R, Yu Q, Moore PH. Papaya genome and genomics Genomics of Tree Crops. 2147483647: 241-259. DOI: 10.1007/978-1-4614-0920-5_8 |
0.458 |
|
| 2012 |
Gschwend AR, Ming R. Papaya sex chromosomes New Insights On Plant Sex Chromosomes. 51-66. |
0.783 |
|
| 2011 |
Gschwend AR, Yu Q, Moore P, Saski C, Chen C, Wang J, Na JK, Ming R. Construction of papaya male and female BAC libraries and application in physical mapping of the sex chromosomes. Journal of Biomedicine & Biotechnology. 2011: 929472. PMID 21765640 DOI: 10.1155/2011/929472 |
0.781 |
|
| 2011 |
Ming R, Bendahmane A, Renner SS. Sex chromosomes in land plants. Annual Review of Plant Biology. 62: 485-514. PMID 21526970 DOI: 10.1146/Annurev-Arplant-042110-103914 |
0.481 |
|
| 2011 |
Yu Q, Guyot R, de Kochko A, Byers A, Navajas-Pérez R, Langston BJ, Dubreuil-Tranchant C, Paterson AH, Poncet V, Nagai C, Ming R. Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea). The Plant Journal : For Cell and Molecular Biology. 67: 305-17. PMID 21457367 DOI: 10.1111/J.1365-313X.2011.04590.X |
0.388 |
|
| 2011 |
VanBuren R, Li J, Zee F, Zhu J, Liu C, Arumuganathan AK, Ming R. Longli is not a Hybrid of Longan and Lychee as Revealed by Genome Size Analysis and Trichome Morphology Tropical Plant Biology. 4: 228-236. DOI: 10.1007/s12042-011-9084-3 |
0.315 |
|
| 2011 |
Souza GM, Berges H, Bocs S, Casu R, D’Hont A, Ferreira JE, Henry R, Ming R, Potier B, Van Sluys M, Vincentz M, Paterson AH. The Sugarcane Genome Challenge: Strategies for Sequencing a Highly Complex Genome Tropical Plant Biology. 4: 145-156. DOI: 10.1007/S12042-011-9079-0 |
0.491 |
|
| 2010 |
Wu X, Wang J, Na JK, Yu Q, Moore RC, Zee F, Huber SC, Ming R. The origin of the non-recombining region of sex chromosomes in Carica and Vasconcellea. The Plant Journal : For Cell and Molecular Biology. 63: 801-10. PMID 20579309 DOI: 10.1111/J.1365-313X.2010.04284.X |
0.486 |
|
| 2010 |
Wang J, Roe B, Macmil S, Yu Q, Murray JE, Tang H, Chen C, Najar F, Wiley G, Bowers J, Van Sluys MA, Rokhsar DS, Hudson ME, Moose SP, Paterson AH, ... Ming R, et al. Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. Bmc Genomics. 11: 261. PMID 20416060 DOI: 10.1186/1471-2164-11-261 |
0.437 |
|
| 2010 |
Blas AL, Ming R, Liu Z, Veatch OJ, Paull RE, Moore PH, Yu Q. Cloning of the papaya chromoplast-specific lycopene beta-cyclase, CpCYC-b, controlling fruit flesh color reveals conserved microsynteny and a recombination hot spot. Plant Physiology. 152: 2013-22. PMID 20181753 DOI: 10.1104/Pp.109.152298 |
0.425 |
|
| 2010 |
Swaminathan K, Alabady MS, Varala K, De Paoli E, Ho I, Rokhsar DS, Arumuganathan AK, Ming R, Green PJ, Meyers BC, Moose SP, Hudson ME. Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses. Genome Biology. 11: R12. PMID 20128909 DOI: 10.1186/Gb-2010-11-2-R12 |
0.364 |
|
| 2010 |
Kochko AD, Akaffou S, Andrade AC, Campa C, Crouzillat D, Guyot R, Hamon P, Ming R, Mueller LA, Poncet V, Tranchant-Dubreuil C, Hamon S. Advances in Coffea Genomics Advances in Botanical Research. 53: 23-63. DOI: 10.1016/S0065-2296(10)53002-7 |
0.473 |
|
| 2010 |
Wai CM, Ming R, Moore PH, Paull RE, Yu Q. Development of Chromosome-specific Cytogenetic Markers and Merging of Linkage Fragments in Papaya Tropical Plant Biology. 3: 171-181. DOI: 10.1007/S12042-010-9054-1 |
0.383 |
|
| 2010 |
Zhang W, Wai CM, Ming R, Yu Q, Jiang J. Integration of Genetic and Cytological Maps and Development of a Pachytene Chromosome-based Karyotype in Papaya Tropical Plant Biology. 3: 166-170. DOI: 10.1007/S12042-010-9053-2 |
0.52 |
|
| 2009 |
Yu Q, Tong E, Skelton RL, Bowers JE, Jones MR, Murray JE, Hou S, Guan P, Acob RA, Luo MC, Moore PH, Alam M, Paterson AH, Ming R. A physical map of the papaya genome with integrated genetic map and genome sequence. Bmc Genomics. 10: 371. PMID 19664231 DOI: 10.1186/1471-2164-10-371 |
0.495 |
|
| 2009 |
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, ... ... Ming R, et al. The Sorghum bicolor genome and the diversification of grasses. Nature. 457: 551-6. PMID 19189423 DOI: 10.1038/Nature07723 |
0.535 |
|
| 2009 |
LAM E, SHINE J, DA SILVA J, LAWTON M, BONOS S, CALVINO M, CARRER H, SILVA-FILHO MC, GLYNN N, HELSEL Z, MA J, RICHARD E, SOUZA GM, MING R. Improving sugarcane for biofuel: engineering for an even better feedstock Gcb Bioenergy. 1: 251-255. DOI: 10.1111/J.1757-1707.2009.01016.X |
0.391 |
|
| 2008 |
Lyons E, Pedersen B, Kane J, Alam M, Ming R, Tang H, Wang X, Bowers J, Paterson A, Lisch D, Freeling M. Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids. Plant Physiology. 148: 1772-81. PMID 18952863 DOI: 10.1104/Pp.108.124867 |
0.501 |
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| 2008 |
Freeling M, Lyons E, Pedersen B, Alam M, Ming R, Lisch D. Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Research. 18: 1924-37. PMID 18836034 DOI: 10.1101/Gr.081026.108 |
0.394 |
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| 2008 |
Tang H, Wang X, Bowers JE, Ming R, Alam M, Paterson AH. Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Research. 18: 1944-54. PMID 18832442 DOI: 10.1101/Gr.080978.108 |
0.518 |
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| 2008 |
Zhang W, Wang X, Yu Q, Ming R, Jiang J. DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya. Genome Research. 18: 1938-43. PMID 18593814 DOI: 10.1101/Gr.078808.108 |
0.498 |
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| 2008 |
Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH. Synteny and collinearity in plant genomes. Science (New York, N.Y.). 320: 486-8. PMID 18436778 DOI: 10.1126/Science.1153917 |
0.467 |
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| 2008 |
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 452: 991-6. PMID 18432245 DOI: 10.1038/Nature06856 |
0.767 |
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| 2008 |
Yu Q, Hou S, Feltus FA, Jones MR, Murray JE, Veatch O, Lemke C, Saw JH, Moore RC, Thimmapuram J, Liu L, Moore PH, Alam M, Jiang J, Paterson AH, ... Ming R, et al. Low X/Y divergence in four pairs of papaya sex-linked genes. The Plant Journal : For Cell and Molecular Biology. 53: 124-32. PMID 17973896 DOI: 10.1111/J.1365-313X.2007.03329.X |
0.558 |
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| 2008 |
Moore PH, Ming R. Papaya Genome: A Model for Tropical Fruit Trees and Beyond Tropical Plant Biology. 1: 179-180. DOI: 10.1007/S12042-008-9025-Y |
0.482 |
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| 2008 |
Wang J, Chen C, Na J, Yu Q, Hou S, Paull RE, Moore PH, Alam M, Ming R. Genome-Wide Comparative Analyses of Microsatellites in Papaya Tropical Plant Biology. 1: 278-292. DOI: 10.1007/S12042-008-9024-Z |
0.464 |
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| 2008 |
Suzuki JY, Tripathi S, Fermín GA, Jan F, Hou S, Saw JH, Ackerman CM, Yu Q, Schatz MC, Pitz KY, Yépes M, Fitch MMM, Manshardt RM, Slightom JL, Ferreira SA, ... ... Ming R, et al. Characterization of Insertion Sites in Rainbow Papaya, the First Commercialized Transgenic Fruit Crop Tropical Plant Biology. 1: 293-309. DOI: 10.1007/S12042-008-9023-0 |
0.419 |
|
| 2008 |
Nelson DR, Ming R, Alam M, Schuler MA. Comparison of Cytochrome P450 Genes from Six Plant Genomes Tropical Plant Biology. 1: 216-235. DOI: 10.1007/S12042-008-9022-1 |
0.402 |
|
| 2008 |
Paull RE, Irikura B, Wu P, Turano H, Chen NJ, Blas A, Fellman JK, Gschwend AR, Wai CM, Yu Q, Presting G, Alam M, Ming R. Fruit Development, Ripening and Quality Related Genes in the Papaya Genome Tropical Plant Biology. 1: 246-277. DOI: 10.1007/S12042-008-9021-2 |
0.421 |
|
| 2008 |
Nagarajan N, Navajas-Pérez R, Pop M, Alam M, Ming R, Paterson AH, Salzberg SL. Genome-Wide Analysis of Repetitive Elements in Papaya Tropical Plant Biology. 1: 191-201. DOI: 10.1007/S12042-008-9015-0 |
0.495 |
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| 2008 |
Yu Q, Navajas-Pérez R, Tong E, Robertson J, Moore PH, Paterson AH, Ming R. Recent Origin of Dioecious and Gynodioecious Y Chromosomes in Papaya Tropical Plant Biology. 1: 49-57. DOI: 10.1007/S12042-007-9005-7 |
0.527 |
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| 2008 |
Paterson AH, Felker P, Hubbell SP, Ming R. The Fruits of Tropical Plant Genomics Tropical Plant Biology. 1: 3-19. DOI: 10.1007/S12042-007-9004-8 |
0.373 |
|
| 2008 |
Wu KK, Ming R, Moore PH, Paterson AH. Sugarcane Genomics and Breeding Plant Breeding: the Arnel R. Hallauer International Symposium. 283-292. DOI: 10.1002/9780470752708.ch20 |
0.316 |
|
| 2007 |
Ming R, Wang J, Moore PH, Paterson AH. Sex chromosomes in flowering plants. American Journal of Botany. 94: 141-50. PMID 21642216 DOI: 10.3732/Ajb.94.2.141 |
0.496 |
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| 2007 |
Chen C, Yu Q, Hou S, Li Y, Eustice M, Skelton RL, Veatch O, Herdes RE, Diebold L, Saw J, Feng Y, Qian W, Bynum L, Wang L, Moore PH, ... ... Ming R, et al. Construction of a sequence-tagged high-density genetic map of papaya for comparative structural and evolutionary genomics in brassicales. Genetics. 177: 2481-91. PMID 17947401 DOI: 10.1534/Genetics.107.081463 |
0.351 |
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| 2007 |
Yu Q, Hou S, Hobza R, Feltus FA, Wang X, Jin W, Skelton RL, Blas A, Lemke C, Saw JH, Moore PH, Alam M, Jiang J, Paterson AH, Vyskot B, ... Ming R, et al. Chromosomal location and gene paucity of the male specific region on papaya Y chromosome. Molecular Genetics and Genomics : Mgg. 278: 177-85. PMID 17520292 DOI: 10.1007/S00438-007-0243-Z |
0.568 |
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| 2007 |
Ming R, Yu Q, Moore PH. Sex determination in papaya. Seminars in Cell & Developmental Biology. 18: 401-8. PMID 17353137 DOI: 10.1016/J.Semcdb.2006.11.013 |
0.549 |
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| 2007 |
Ming R, Moore PH. Genomics of sex chromosomes. Current Opinion in Plant Biology. 10: 123-30. PMID 17300986 DOI: 10.1016/j.pbi.2007.01.013 |
0.463 |
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| 2007 |
Yu Q, Steiger D, Kramer EM, Moore PH, Ming R. Floral MADS-box Genes in Trioecious Papaya: Characterization of AG and AP1 Subfamily Genes Revealed a Sex-type-specific Gene Tropical Plant Biology. 1: 97-107. DOI: 10.1007/S12042-007-9000-Z |
0.412 |
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| 2007 |
Eustice M, Yu Q, Lai CW, Hou S, Thimmapuram J, Liu L, Alam M, Moore PH, Presting GG, Ming R. Development and application of microsatellite markers for genomic analysis of papaya Tree Genetics & Genomes. 4: 333-341. DOI: 10.1007/S11295-007-0112-2 |
0.457 |
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| 2006 |
Lai CW, Yu Q, Hou S, Skelton RL, Jones MR, Lewis KL, Murray J, Eustice M, Guan P, Agbayani R, Moore PH, Ming R, Presting GG. Analysis of papaya BAC end sequences reveals first insights into the organization of a fruit tree genome. Molecular Genetics and Genomics : Mgg. 276: 1-12. PMID 16703363 DOI: 10.1007/S00438-006-0122-Z |
0.376 |
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| 2005 |
Yu Q, Moore PH, Albert HH, Roader AH, Ming R. Cloning and characterization of a FLORICAULA/LEAFY ortholog, PFL, in polygamous papaya. Cell Research. 15: 576-84. PMID 16117847 DOI: 10.1038/Sj.Cr.7290327 |
0.393 |
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| 2005 |
Kato CY, Nagai C, Moore PH, Zee F, Kim MS, Steiger DL, Ming R. Intra-specific DNA polymorphism in pineapple (Ananas comosus (L.) Merr.) assessed by AFLP markers Genetic Resources and Crop Evolution. 51: 815-825. DOI: 10.1007/S10722-005-0005-X |
0.306 |
|
| 2004 |
Schenck S, Crepeau MW, Wu KK, Moore PH, Yu Q, Ming R. Genetic diversity and relationships in native Hawaiian Saccharum officinarum sugarcane Journal of Heredity. 95: 327-331. PMID 15247312 DOI: 10.1093/Jhered/Esh052 |
0.327 |
|
| 2004 |
Ma H, Moore PH, Liu Z, Kim MS, Yu Q, Fitch MM, Sekioka T, Paterson AH, Ming R. High-density linkage mapping revealed suppression of recombination at the sex determination locus in papaya. Genetics. 166: 419-36. PMID 15020433 DOI: 10.1534/Genetics.166.1.419 |
0.374 |
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| 2004 |
Liu Z, Moore PH, Ma H, Ackerman CM, Ragiba M, Yu Q, Pearl HM, Kim MS, Charlton JW, Stiles JI, Zee FT, Paterson AH, Ming R. A primitive Y chromosome in papaya marks incipient sex chromosome evolution. Nature. 427: 348-52. PMID 14737167 DOI: 10.1038/Nature02228 |
0.512 |
|
| 2002 |
Ming R, Del Monte TA, Hernandez E, Moore PH, Irvine JE, Paterson AH. Comparative analysis of QTLs affecting plant height and flowering among closely-related diploid and polyploid genomes. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 45: 794-803. PMID 12416611 DOI: 10.1139/G02-042 |
0.423 |
|
| 2001 |
Ming R, Moore PH, Zee F, Abbey CA, Ma H, Paterson AH. Construction and characterization of a papaya BAC library as a foundation for molecular dissection of a tree-fruit genome Theoretical and Applied Genetics. 102: 892-899. DOI: 10.1007/S001220000448 |
0.518 |
|
| 1997 |
Ming R, Brewbaker JL, Pratt RC, Musket TA, McMullen MD. Molecular mapping of a major gone conferring resistance to maize mosaic virus Theoretical and Applied Genetics. 95: 271-275. DOI: 10.1007/S001220050559 |
0.35 |
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