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Anna-Sophie Fiston-Lavier, Ph.D. - Publications

Affiliations: 
Genome Institute of Sciences of Evolution - University MontpellierII 
Area:
Transposable elements, duplication, evolution, adaptation, population genomics, NGS
Website:
http://anna.fiston-lavier.com/
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zhu X, Zhou B, Pattni R, Gleason K, Tan C, Kalinowski A, Sloan S, Fiston-Lavier AS, Mariani J, Petrov D, Barres BA, Duncan L, Abyzov A, Vogel H, Moran JV, et al. Author Correction: Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia. Nature Neuroscience. PMID 37648813 DOI: 10.1038/s41593-023-01438-w  0.361
2023 Mohamed M, Sabot F, Varoqui M, Mugat B, Audouin K, Pélisson A, Fiston-Lavier AS, Chambeyron S. TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches. Genome Biology. 24: 63. PMID 37013657 DOI: 10.1186/s13059-023-02911-2  0.35
2022 Nicolas J, Tempel S, Fiston-Lavier AS, Cherif E. Finding and Characterizing Repeats in Plant Genomes. Methods in Molecular Biology (Clifton, N.J.). 2443: 327-385. PMID 35037215 DOI: 10.1007/978-1-0716-2067-0_18  0.349
2021 Delorme Q, Costa R, Mansour Y, Fiston-Lavier AS, Chateau A. Involving repetitive regions in scaffolding improvement. Journal of Bioinformatics and Computational Biology. 19: 2140016. PMID 34923926 DOI: 10.1142/S0219720021400163  0.314
2021 Mansour Y, Chateau A, Fiston-Lavier AS. BREC: an R package/Shiny app for automatically identifying heterochromatin boundaries and estimating local recombination rates along chromosomes. Bmc Bioinformatics. 22: 396. PMID 34362304 DOI: 10.1186/s12859-021-04233-1  0.358
2021 Pradier L, Tissot T, Fiston-Lavier AS, Bedhomme S. PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets. Bmc Bioinformatics. 22: 349. PMID 34174810 DOI: 10.1186/s12859-021-04270-w  0.432
2021 Pradier L, Tissot T, Fiston-Lavier AS, Bedhomme S. PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets. Bmc Bioinformatics. 22: 349. PMID 34174810 DOI: 10.1186/s12859-021-04270-w  0.432
2021 Zhu X, Zhou B, Pattni R, Gleason K, Tan C, Kalinowski A, Sloan S, Fiston-Lavier AS, Mariani J, Petrov D, Barres BA, Duncan L, Abyzov A, Vogel H, et al. Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia. Nature Neuroscience. PMID 33432196 DOI: 10.1038/s41593-020-00767-4  0.545
2019 Bogaerts-Márquez M, Barrón MG, Fiston-Lavier AS, Vendrell-Mir P, Castanera R, Casacuberta JM, González J. T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data. Bioinformatics (Oxford, England). PMID 31580402 DOI: 10.1093/Bioinformatics/Btz727  0.726
2019 Klafack S, Fiston-Lavier AS, Bergmann SM, Hammoumi S, Schröder L, Fuchs W, Lusiastuti A, Lee PY, Heredia SV, Gosselin-Grenet AS, Avarre JC. Evolves In Vitro through an Assemblage of Haplotypes that Alternatively Become Dominant or Under-Represented. Viruses. 11. PMID 31443175 DOI: 10.3390/V11080754  0.322
2019 Rech GE, Bogaerts-Márquez M, Barrón MG, Merenciano M, Villanueva-Cañas JL, Horváth V, Fiston-Lavier AS, Luyten I, Venkataram S, Quesneville H, Petrov DA, González J. Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. Plos Genetics. 15: e1007900. PMID 30753202 DOI: 10.1371/Journal.Pgen.1007900  0.64
2016 Assogba BS, Milesi P, Djogbénou LS, Berthomieu A, Makoundou P, Baba-Moussa LS, Fiston-Lavier AS, Belkhir K, Labbé P, Weill M. The ace-1 Locus Is Amplified in All Resistant Anopheles gambiae Mosquitoes: Fitness Consequences of Homogeneous and Heterogeneous Duplications. Plos Biology. 14: e2000618. PMID 27918584 DOI: 10.1371/Journal.Pbio.2000618  0.397
2015 Maumus F, Fiston-Lavier AS, Quesneville H. Impact of transposable elements on insect genomes and biology. Current Opinion in Insect Science. 7: 30-36. PMID 32846669 DOI: 10.1016/J.Cois.2015.01.001  0.687
2015 Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods. Mobile Dna. 6: 13. PMID 26244060 DOI: 10.1186/S13100-015-0044-6  0.623
2015 Fiston-Lavier AS, Barrón MG, Petrov DA, González J. T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data. Nucleic Acids Research. 43: e22. PMID 25510498 DOI: 10.1093/Nar/Gku1250  0.728
2015 Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods Mobile Dna. 6. DOI: 10.1186/s13100-015-0044-6  0.563
2015 Maumus F, Fiston-Lavier AS, Quesneville H. Impact of transposable elements on insect genomes and biology Current Opinion in Insect Science. 7: 30-36. DOI: 10.1016/j.cois.2015.01.001  0.684
2014 Barrón MG, Fiston-Lavier AS, Petrov DA, González J. Population genomics of transposable elements in Drosophila. Annual Review of Genetics. 48: 561-81. PMID 25292358 DOI: 10.1146/Annurev-Genet-120213-092359  0.75
2014 McCoy RC, Taylor RW, Blauwkamp TA, Kelley JL, Kertesz M, Pushkarev D, Petrov DA, Fiston-Lavier AS. Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements. Plos One. 9: e106689. PMID 25188499 DOI: 10.1371/Journal.Pone.0106689  0.723
2014 Kelley JL, Peyton JT, Fiston-Lavier AS, Teets NM, Yee MC, Johnston JS, Bustamante CD, Lee RE, Denlinger DL. Compact genome of the Antarctic midge is likely an adaptation to an extreme environment. Nature Communications. 5: 4611. PMID 25118180 DOI: 10.1038/Ncomms5611  0.549
2011 Field B, Fiston-Lavier AS, Kemen A, Geisler K, Quesneville H, Osbourn AE. Formation of plant metabolic gene clusters within dynamic chromosomal regions. Proceedings of the National Academy of Sciences of the United States of America. 108: 16116-21. PMID 21876149 DOI: 10.1073/Pnas.1109273108  0.557
2011 Fiston-Lavier AS, Carrigan M, Petrov DA, González J. T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data. Nucleic Acids Research. 39: e36. PMID 21177644 DOI: 10.1093/Nar/Gkq1291  0.729
2011 Petrov DA, Fiston-Lavier AS, Lipatov M, Lenkov K, González J. Population genomics of transposable elements in Drosophila melanogaster. Molecular Biology and Evolution. 28: 1633-44. PMID 21172826 DOI: 10.1093/Molbev/Msq337  0.642
2010 Fiston-Lavier AS, Singh ND, Lipatov M, Petrov DA. Drosophila melanogaster recombination rate calculator. Gene. 463: 18-20. PMID 20452408 DOI: 10.1016/J.Gene.2010.04.015  0.686
2007 Fiston-Lavier AS, Anxolabehere D, Quesneville H. A model of segmental duplication formation in Drosophila melanogaster. Genome Research. 17: 1458-70. PMID 17726166 DOI: 10.1101/Gr.6208307  0.638
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