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Ming Chen - Publications

Affiliations: 
2007-2014 Social & Administrative Pharmacy China Pharmaceutical University 
 2014-2014 R&D Amgen Inc., Thousand Oaks, CA, United States 
Area:
Regulatory Sciences; Pharmaceutical Outcomes and Policy
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang P, Li S, Chen M. Characterization and Function of Circular RNAs in Plants. Frontiers in Molecular Biosciences. 7: 91. PMID 32509801 DOI: 10.3389/Fmolb.2020.00091  0.31
2018 Jin D, Meng X, Wang Y, Wang J, Zhao Y, Chen M. Computational investigation of small RNAs in the establishment of root nodules and arbuscular mycorrhiza in leguminous plants. Science China. Life Sciences. PMID 29305786 DOI: 10.1007/S11427-017-9203-7  0.301
2017 Zhang P, Meng X, Chen H, Liu Y, Xue J, Zhou Y, Chen M. PlantCircNet: a database for plant circRNA-miRNA-mRNA regulatory networks. Database : the Journal of Biological Databases and Curation. 2017. PMID 31725858 DOI: 10.1093/Database/Bax089  0.371
2015 Yuan C, Wang J, Harrison AP, Meng X, Chen D, Chen M. Genome-wide view of natural antisense transcripts in Arabidopsis thaliana. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 22: 233-43. PMID 25922535 DOI: 10.1093/Dnares/Dsv008  0.308
2015 Zhang Z, Jiang L, Wang J, Gu P, Chen M. MTide: an integrated tool for the identification of miRNA-target interaction in plants. Bioinformatics (Oxford, England). 31: 290-1. PMID 25256573 DOI: 10.1093/Bioinformatics/Btu633  0.333
2015 Bai Y, Dai X, Harrison AP, Chen M. RNA regulatory networks in animals and plants: a long noncoding RNA perspective. Briefings in Functional Genomics. 14: 91-101. PMID 24914100 DOI: 10.1093/Bfgp/Elu017  0.325
2014 Tang L, Zhang Z, Gu P, Chen M. Construction and analysis of microRNA-transcription factor regulation network in Arabidopsis. Iet Systems Biology. 8: 76-86. PMID 25014374 DOI: 10.1049/Iet-Syb.2013.0024  0.331
2013 Meng Y, Shao C, Wang H, Chen M. Uncovering DCL1-dependent small RNA loci on plant genomes: a structure-based approach. Journal of Experimental Botany. 65: 395-400. PMID 24336345 DOI: 10.1093/Jxb/Ert409  0.35
2013 Feng C, Xu CJ, Wang Y, Liu WL, Yin XR, Li X, Chen M, Chen KS. Codon usage patterns in Chinese bayberry (Myrica rubra) based on RNA-Seq data. Bmc Genomics. 14: 732. PMID 24160180 DOI: 10.1186/1471-2164-14-732  0.313
2013 Huang Y, Liu L, Huang J, Wang Z, Chen F, Zhang Q, Zheng B, Chen M. Use of transcriptome sequencing to understand the pistillate flowering in hickory (Carya cathayensis Sarg.) Bmc Genomics. 14: 691-691. PMID 24106755 DOI: 10.1186/1471-2164-14-691  0.317
2013 Shao C, Wu Q, Qiu J, Jin S, Zhang B, Qian J, Chen M, Meng Y. Identification of novel microRNA-like-coding sites on the long-stem microRNA precursors in Arabidopsis. Gene. 527: 477-83. PMID 23850578 DOI: 10.1016/J.Gene.2013.06.070  0.302
2013 Jin D, Wang Y, Zhao Y, Chen M. MicroRNAs and their cross-talks in plant development. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 40: 161-70. PMID 23618399 DOI: 10.1016/J.Jgg.2013.02.003  0.341
2013 Liu L, Mei Q, Yu Z, Sun T, Zhang Z, Chen M. An integrative bioinformatics framework for genome-scale multiple level network reconstruction of rice. Journal of Integrative Bioinformatics. 10: 223. PMID 23563093 DOI: 10.2390/Biecoll-Jib-2013-223  0.33
2013 Lu X, Chen D, Shu D, Zhang Z, Wang W, Klukas C, Chen LL, Fan Y, Chen M, Zhang C. The differential transcription network between embryo and endosperm in the early developing maize seed. Plant Physiology. 162: 440-55. PMID 23478895 DOI: 10.1104/Pp.113.214874  0.304
2013 Zhang Y, Bai Y, Han J, Chen M, Kayesh E, Jiang W, Fang J. Bioinformatics prediction of miRNAs in the Prunus persica genome with validation of their precise sequences by miR-RACE Journal of Plant Physiology. 170: 80-92. PMID 23107282 DOI: 10.1016/J.Jplph.2012.08.021  0.306
2012 Meng Y, Shao C, Ma X, Wang H, Chen M. Expression-based functional investigation of the organ-specific microRNAs in Arabidopsis. Plos One. 7: e50870. PMID 23226412 DOI: 10.1371/Journal.Pone.0050870  0.318
2012 Meng Y, Shao C, Wang H, Ma X, Chen M. Construction of gene regulatory networks mediated by vegetative and reproductive stage-specific small RNAs in rice (Oryza sativa). The New Phytologist. 197: 441-53. PMID 23121287 DOI: 10.1111/Nph.12018  0.31
2012 Li X, Korir NK, Liu L, Shangguan L, Wang Y, Han J, Chen M, Fang J. Microarray analysis of differentially expressed genes engaged in fruit development between Prunus mume and Prunus armeniaca. Journal of Plant Physiology. 169: 1776-88. PMID 23036314 DOI: 10.1016/J.Jplph.2012.07.016  0.325
2012 Shao C, Chen M, Meng Y. A reversed framework for the identification of microRNA-target pairs in plants. Briefings in Bioinformatics. 14: 293-301. PMID 22811545 DOI: 10.1093/Bib/Bbs040  0.325
2012 Meng Y, Shao C, Wang H, Chen M. Are all the miRBase-registered microRNAs true? A structure- and expression-based re-examination in plants. Rna Biology. 9: 249-53. PMID 22336711 DOI: 10.4161/Rna.19230  0.314
2012 Feng C, Chen M, Xu CJ, Bai L, Yin XR, Li X, Allan AC, Ferguson IB, Chen KS. Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq. Bmc Genomics. 13: 19. PMID 22244270 DOI: 10.1186/1471-2164-13-19  0.303
2012 Chen D, Yuan C, Zhang J, Zhang Z, Bai L, Meng Y, Chen LL, Chen M. PlantNATsDB: a comprehensive database of plant natural antisense transcripts. Nucleic Acids Research. 40: D1187-93. PMID 22058132 DOI: 10.1093/Nar/Gkr823  0.348
2011 Zhu P, Gu H, Jiao Y, Huang D, Chen M. Computational identification of protein-protein interactions in rice based on the predicted rice interactome network. Genomics, Proteomics & Bioinformatics. 9: 128-37. PMID 22196356 DOI: 10.1016/S1672-0229(11)60016-8  0.322
2011 Meng Y, Shao C, Wang H, Chen M. The regulatory activities of plant microRNAs: a more dynamic perspective Plant Physiology. 157: 1583-1595. PMID 22003084 DOI: 10.1104/Pp.111.187088  0.334
2011 Meng Y, Shao C, Gou L, Jin Y, Chen M. Construction of microRNA- and microRNA*-mediated regulatory networks in plants. Rna Biology. 8: 1124-48. PMID 21955495 DOI: 10.4161/Rna.8.6.17743  0.322
2011 Li JY, Yang HJ, Lan TY, Wei H, Zhang HR, Chen M, Fan W, Ma YY, Zhong BX. Expression profiling and regulation of genes related to silkworm posterior silk gland development and fibroin synthesis. Journal of Proteome Research. 10: 3551-64. PMID 21657221 DOI: 10.1021/Pr200196X  0.324
2011 Gu H, Zhu P, Jiao Y, Meng Y, Chen M. PRIN: a predicted rice interactome network. Bmc Bioinformatics. 12: 161. PMID 21575196 DOI: 10.1186/1471-2105-12-161  0.301
2011 Chen D, Meng Y, Yuan C, Bai L, Huang D, Lv S, Wu P, Chen LL, Chen M. Plant siRNAs from introns mediate DNA methylation of host genes. Rna (New York, N.Y.). 17: 1012-24. PMID 21518803 DOI: 10.1261/Rna.2589011  0.357
2011 Meng Y, Shao C, Chen M. Toward microRNA-mediated gene regulatory networks in plants. Briefings in Bioinformatics. 12: 645-59. PMID 21262742 DOI: 10.1093/Bib/Bbq091  0.34
2010 Chen D, Zhang F, Yuan C, Lu J, Li X, Chen M. A web-based platform for rice microarray annotation and data analysis. Science China-Life Sciences. 53: 1467-1473. PMID 21181349 DOI: 10.1007/S11427-010-4101-6  0.304
2010 Chen M, Meng Y, Gu H, Chen D. Brief communication: Functional characterization of plant small RNAs based on next-generation sequencing data Computational Biology and Chemistry. 34: 308-312. PMID 21030312 DOI: 10.1016/J.Compbiolchem.2010.10.001  0.357
2010 Meng Y, Gou L, Chen D, Mao C, Jin Y, Wu P, Chen M. PmiRKB: a plant microRNA knowledge base. Nucleic Acids Research. 39: D181-7. PMID 20719744 DOI: 10.1093/Nar/Gkq721  0.319
2010 Meng Y, Gou L, Chen D, Wu P, Chen M. High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism. Journal of Experimental Botany. 61: 3833-7. PMID 20643809 DOI: 10.1093/Jxb/Erq209  0.322
2010 Chen M, Meng Y, Mao C, Chen D, Wu P. Methodological framework for functional characterization of plant microRNAs. Journal of Experimental Botany. 61: 2271-80. PMID 20388745 DOI: 10.1093/Jxb/Erq087  0.316
2010 Meng Y, Ma X, Chen D, Wu P, Chen M. MicroRNA-mediated signaling involved in plant root development. Biochemical and Biophysical Research Communications. 393: 345-9. PMID 20138828 DOI: 10.1016/J.Bbrc.2010.01.129  0.336
2010 Li JY, Moghaddam SH, Chen JE, Chen M, Zhong BX. Shotgun proteomic analysis on the embryos of silkworm Bombyx mori at the end of organogenesis. Insect Biochemistry and Molecular Biology. 40: 293-302. PMID 20138214 DOI: 10.1016/J.Ibmb.2010.01.008  0.306
2010 Meng Y, Chen D, Ma X, Mao C, Cao J, Wu P, Chen M. Mechanisms of microRNA-mediated auxin signaling inferred from the rice mutant osaxr. Plant Signaling & Behavior. 5: 252-4. PMID 20023405 DOI: 10.4161/Psb.5.3.10549  0.332
2010 Shi Q, Meng Y, Chen D, He F, Gu H, Wu P, Chen M. OsCAS: a comprehensive web-based annotation platform for rice microarray data Biochip Journal. 4: 9-15. DOI: 10.1007/S13206-010-4102-3  0.3
2009 Li J, Chen X, Moghaddam SHH, Chen M, Wei H, Zhong B. Shotgun proteomics approach to characterizing the embryonic proteome of the silkworm, Bombyx mori, at labrum appearance stage. Insect Molecular Biology. 18: 649-660. PMID 19754742 DOI: 10.1111/J.1365-2583.2009.00903.X  0.302
2009 Meng Y, Huang F, Shi Q, Cao J, Chen D, Zhang J, Ni J, Wu P, Chen M. Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant. Planta. 230: 883-98. PMID 19655164 DOI: 10.1007/S00425-009-0994-3  0.331
2007 Zhou P, Wen J, Oren A, Chen M, Wu M. Genomic survey of sequence features for ultraviolet tolerance in Haloarchaea (family Halobacteriaceae). Genomics. 90: 103-9. PMID 17498923 DOI: 10.1016/J.Ygeno.2007.03.015  0.331
2007 Du L, Jiao F, Chu J, Jin G, Chen M, Wu P. The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction. Genomics. 89: 697-707. PMID 17408920 DOI: 10.1016/J.Ygeno.2007.02.001  0.333
2007 HE F, SHI Q, CHEN M, WU P. RiceDB: A Web-Based Integrated Database for Annotating Rice Microarray Rice Science. 14: 256-264. DOI: 10.1016/S1672-6308(08)60003-7  0.301
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