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Nicolas Robine - Publications

Affiliations: 
New York Genome Center 
Area:
Computational Biology
Website:
http://scholar.google.com/citations?user=Etj2ByUAAAAJ&hl=en
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zviran A, Schulman RC, Shah M, Hill STK, Deochand S, Khamnei CC, Maloney D, Patel K, Liao W, Widman AJ, Wong P, Callahan MK, Ha G, Reed S, Rotem D, ... ... Robine N, et al. Genome-wide cell-free DNA mutational integration enables ultra-sensitive cancer monitoring. Nature Medicine. PMID 32483360 DOI: 10.1038/S41591-020-0915-3  0.323
2020 Froeling FE, Robine N, Hubert B, Zody M, Oschwald D, Varmus HE, Sawyers CL, Tuveson DA. Abstract 5128: Polyethnic-1000: Advancing cancer genomics by studying ethnically diverse, underserved patient populations in New York Cancer Research. 79: 5128-5128. DOI: 10.1158/1538-7445.Am2019-5128  0.322
2019 Arora K, Shah M, Johnson M, Sanghvi R, Shelton J, Nagulapalli K, Oschwald DM, Zody MC, Germer S, Jobanputra V, Carter J, Robine N. Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platforms. Scientific Reports. 9: 19123. PMID 31836783 DOI: 10.1038/S41598-019-55636-3  0.347
2019 Yang W, Lee KW, Srivastava RM, Kuo F, Krishna C, Chowell D, Makarov V, Hoen D, Dalin MG, Wexler L, Ghossein R, Katabi N, Nadeem Z, Cohen MA, Tian SK, ... Robine N, et al. Immunogenic neoantigens derived from gene fusions stimulate T cell responses. Nature Medicine. PMID 31011208 DOI: 10.1038/S41591-019-0434-2  0.302
2019 McNeer NA, Philip J, Geiger H, Ries RE, Lavallée VP, Walsh M, Shah M, Arora K, Emde AK, Robine N, Alonzo TA, Kolb EA, Gamis AS, Smith M, Gerhard DS, et al. Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia. Leukemia. PMID 30760869 DOI: 10.1038/S41375-019-0402-3  0.381
2018 Wrzeszczynski KO, Felice V, Abhyankar A, Kozon L, Geiger H, Manaa D, London F, Robinson D, Fang X, Lin D, Lamendola-Essel MF, Khaira D, Dikoglu E, Emde AK, Robine N, et al. Analytical Validation of Clinical Whole-Genome and Transcriptome Sequencing of Patient Derived Tumors Clinical Application of Whole-Genome Sequencing for Reporting Targetable Variants in Cancer. The Journal of Molecular Diagnostics : Jmd. PMID 30138725 DOI: 10.1016/J.Jmoldx.2018.06.007  0.377
2018 Fan PD, Narzisi G, Jayaprakash AD, Venturini E, Robine N, Smibert P, Germer S, Yu HA, Jordan EJ, Paik PK, Janjigian YY, Chaft JE, Wang L, Jungbluth AA, Middha S, et al. amplification is a mechanism of acquired resistance to EGFR inhibitors identified by transposon mutagenesis and clinical genomics. Proceedings of the National Academy of Sciences of the United States of America. PMID 29875142 DOI: 10.1073/Pnas.1717782115  0.647
2018 Corvelo A, Clarke WE, Robine N, Zody MC. taxMaps: Comprehensive and highly accurate taxonomic classification of short-read data in reasonable time. Genome Research. PMID 29588360 DOI: 10.1101/Gr.225276.117  0.316
2018 Zviran A, Hill ST, Schulman R, Shah M, Deochand S, Ha G, Reed S, Rotem D, Gydush G, Rhoades J, Huang K, Liao W, Maloney D, Omans N, Malbari M, ... ... Robine N, et al. Abstract 3247: Genome-wide cell-free DNA mutation integration for sensitive cancer detection Cancer Research. 78: 3247-3247. DOI: 10.1158/1538-7445.Am2018-3247  0.331
2017 Fan P, Narzisi G, Jayaprakash A, Venturini E, Robine N, Smibert P, Germer S, Jordan E, Wang L, Jungbluth AA, Spraggon L, Lovly CM, Kris MG, Yu HA, Riely GJ, et al. YES1 amplification as a mechanism of acquired resistance (AR) to EGFR tyrosine kinase inhibitors (TKIs) identified by a transposon mutagenesis screen and clinical genomic testing. Journal of Clinical Oncology. 35: 9043-9043. DOI: 10.1200/Jco.2017.35.15_Suppl.9043  0.643
2017 Wrzeszczynski KO, Abhyankar A, Felice V, Dikoglu E, Kozon L, Robine N, Emde A, Basturk O, Bhanot UK, Kentsis A, Mansukhani M, Bhagat G, Jobanputra V. Abstract 2714: Analytical validation of clinical whole genome and transcriptome sequencing of patient derived tumors: clinical application of whole genome sequencing for reporting targetable variants in cancer Cancer Research. 77: 2714-2714. DOI: 10.1158/1538-7445.Am2017-2714  0.357
2016 Chen BR, Robine N, Wrzeszczynski K, Vacic V, Emde AK, Arora K, Shah M, Grabowska EA, Felice V, Dikoglu E, Reeves C, Frank M, Jobanputra V, Zody MC, Bloom T, et al. Abstract 4498: RNA-Seq in the NYGC GBM Clinical Outcomes Pilot Study Cancer Research. 76: 4498-4498. DOI: 10.1158/1538-7445.Am2016-4498  0.434
2016 Wrzeszczynski KO, Robine N, Vacic V, Emde A, Chen B, Liao W, Arora K, Shah M, Grabowska EA, Felice V, Dikoglu E, Reeves C, Frank M, Jobanputra V, Zody MC, et al. Abstract 4497: NYGC glioblastoma clinical outcomes pilot study: Discovering therapeutic potential in glioblastoma through integrative genomics Cancer Research. 76: 4497-4497. DOI: 10.1158/1538-7445.Am2016-4497  0.387
2015 Cheung J, Ginter C, Cassidy M, Franklin MC, Rudolph MJ, Robine N, Darnell RB, Hendrickson WA. Structural insights into mis-regulation of protein kinase A in human tumors. Proceedings of the National Academy of Sciences of the United States of America. 112: 1374-9. PMID 25605907 DOI: 10.1073/Pnas.1424206112  0.306
2014 Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, et al. Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines. Genome Research. 24: 1236-50. PMID 24985917 DOI: 10.1101/Gr.161554.113  0.728
2012 Westholm JO, Ladewig E, Okamura K, Robine N, Lai EC. Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs. Rna (New York, N.Y.). 18: 177-92. PMID 22190743 DOI: 10.1261/Rna.030627.111  0.688
2011 Smibert P, Bejarano F, Wang D, Garaulet DL, Yang JS, Martin R, Bortolamiol-Becet D, Robine N, Hiesinger PR, Lai EC. A Drosophila genetic screen yields allelic series of core microRNA biogenesis factors and reveals post-developmental roles for microRNAs. Rna (New York, N.Y.). 17: 1997-2010. PMID 21947201 DOI: 10.1261/Rna.2983511  0.712
2011 Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, et al. Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Genome Research. 21: 203-15. PMID 21177969 DOI: 10.1101/Gr.116657.110  0.689
2011 Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC. Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans. Genome Research. 21: 286-300. PMID 21177960 DOI: 10.1101/Gr.113050.110  0.697
2011 Okamura K, Robine N, Liu Y, Liu Q, Lai EC. R2D2 organizes small regulatory RNA pathways in Drosophila. Molecular and Cellular Biology. 31: 884-96. PMID 21135122 DOI: 10.1128/Mcb.01141-10  0.7
2010 Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... Robine N, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/Science.1198374  0.712
2010 Rouget C, Papin C, Boureux A, Meunier AC, Franco B, Robine N, Lai EC, Pelisson A, Simonelig M. Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo. Nature. 467: 1128-32. PMID 20953170 DOI: 10.1038/Nature09465  0.539
2010 Yang JS, Maurin T, Robine N, Rasmussen KD, Jeffrey KL, Chandwani R, Papapetrou EP, Sadelain M, O'Carroll D, Lai EC. Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis. Proceedings of the National Academy of Sciences of the United States of America. 107: 15163-8. PMID 20699384 DOI: 10.1073/Pnas.1006432107  0.545
2009 Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC. A broadly conserved pathway generates 3'UTR-directed primary piRNAs. Current Biology : Cb. 19: 2066-76. PMID 20022248 DOI: 10.1016/J.Cub.2009.11.064  0.672
2009 Lau NC, Robine N, Martin R, Chung WJ, Niki Y, Berezikov E, Lai EC. Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line. Genome Research. 19: 1776-85. PMID 19541914 DOI: 10.1101/Gr.094896.109  0.584
2009 Borde V, Robine N, Lin W, Bonfils S, Géli V, Nicolas A. Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites. The Embo Journal. 28: 99-111. PMID 19078966 DOI: 10.1038/Emboj.2008.257  0.306
2008 Schlecht U, Erb I, Demougin P, Robine N, Borde V, van Nimwegen E, Nicolas A, Primig M. Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast. Molecular Biology of the Cell. 19: 2193-207. PMID 18305101 DOI: 10.1091/Mbc.E07-12-1242  0.356
2006 La Rosa P, Viara E, Hupé P, Pierron G, Liva S, Neuvial P, Brito I, Lair S, Servant N, Robine N, Manié E, Brennetot C, Janoueix-Lerosey I, Raynal V, Gruel N, et al. VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles. Bioinformatics (Oxford, England). 22: 2066-73. PMID 16820431 DOI: 10.1093/Bioinformatics/Btl359  0.312
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