Julie M. Claycomb, Ph. D. - Related publications

Affiliations: 
Molecular Genetics University of Toronto, Toronto, ON, Canada 
Area:
small RNAs, gene silencing, C. elegans, development, germline, chromatin
Website:
http://individual.utoronto.ca/claycomblab/
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Yu AM, Tu MJ. Deliver the promise: RNAs as a new class of molecular entities for therapy and vaccination. Pharmacology & Therapeutics. 107967. PMID 34403681 DOI: 10.1016/j.pharmthera.2021.107967   
2021 English AM, Green KM, Moon SL. A (dis)integrated stress response: Genetic diseases of eIF2α regulators. Wiley Interdisciplinary Reviews. Rna. e1689. PMID 34463036 DOI: 10.1002/wrna.1689   
2021 Zhang H, Ding Y. Novel insights into the pervasive role of RNA structure in post-transcriptional regulation of gene expression in plants. Biochemical Society Transactions. PMID 34436520 DOI: 10.1042/BST20210318   
2021 Hong S, Jeong D, Ryan J, Foo M, Tang X, Kim J. Design and Evaluation of Synthetic RNA-Based Incoherent Feed-Forward Loop Circuits. Biomolecules. 11. PMID 34439849 DOI: 10.3390/biom11081182   
2021 Kordyś M, Sen R, Warkocki Z. Applications of the versatile CRISPR-Cas13 RNA targeting system. Wiley Interdisciplinary Reviews. Rna. e1694. PMID 34553495 DOI: 10.1002/wrna.1694   
2021 Pusic P, Sonnleitner E, Bläsi U. Specific and Global RNA Regulators in . International Journal of Molecular Sciences. 22. PMID 34445336 DOI: 10.3390/ijms22168632   
2021 Zaepfel BL, Rothstein JD. RNA Is a Double-Edged Sword in ALS Pathogenesis. Frontiers in Cellular Neuroscience. 15: 708181. PMID 34349625 DOI: 10.3389/fncel.2021.708181   
2021 Chan D, Feng C, England WE, Wyman D, Flynn RA, Wang X, Shi Y, Mortazavi A, Spitale RC. Diverse functional elements in RNA predicted transcriptome-wide by orthogonal RNA structure probing. Nucleic Acids Research. PMID 34634799 DOI: 10.1093/nar/gkab885   
2021 Dhaliwal NK, Mitchell JA. Nuclear RNA Isolation and Sequencing. Methods in Molecular Biology (Clifton, N.J.). 2372: 75-83. PMID 34417744 DOI: 10.1007/978-1-0716-1697-0_8   
2021 Zhao Y, Shu R, Liu J. The development and improvement of ribonucleic acid therapy strategies. Molecular Therapy. Nucleic Acids. PMID 34540356 DOI: 10.1016/j.omtn.2021.09.002   
2021 Wang Y, Fan J, Wang J, Zhu Y, Xu L, Tong D, Cheng H. ZFC3H1 prevents RNA trafficking into nuclear speckles through condensation. Nucleic Acids Research. PMID 34530450 DOI: 10.1093/nar/gkab774   
2021 Aoyama JJ, Raina M, Storz G. Synthetic dual-function RNA reveals features necessary for target regulation. Journal of Bacteriology. JB0034521. PMID 34460309 DOI: 10.1128/JB.00345-21   
2021 Wu T, Nance J, Chu F, Fazzio TG. Characterization of R-loop-interacting proteins in embryonic stem cells reveals roles in ribosomal RNA processing and gene expression. Molecular & Cellular Proteomics : McP. 100142. PMID 34478875 DOI: 10.1016/j.mcpro.2021.100142   
2021 Zhao X, Li Y, Duan Y, Amin A, Xie Y, Shi C, Ma C. A simple methodology for RNA isolation from bacteria by integration of formamide extraction and chitosan-modified silica purification. Analytical and Bioanalytical Chemistry. PMID 34505946 DOI: 10.1007/s00216-021-03644-6   
2021 Mollocana-Lara EC, Ni M, Agathos SN, Gonzales-Zubiate FA. The infinite possibilities of RNA therapeutics. Journal of Industrial Microbiology & Biotechnology. PMID 34463324 DOI: 10.1093/jimb/kuab063   
2021 Jiang J, Zhang T, Pan Y, Hu Z, Yuan J, Hu X, Zhang L, Zhang Y. Characterization of Long Non-coding RNA Associated Proteins by RNA-Immunoprecipitation. Methods in Molecular Biology (Clifton, N.J.). 2372: 19-26. PMID 34417739 DOI: 10.1007/978-1-0716-1697-0_3   
2021 Su L, Chen F, Yu H, Yan H, Zhao F, Fan C, Zhao Y. Addition-Elimination Mechanism-Activated Nucleotide Transition Sequencing for RNA Dynamics Profiling. Analytical Chemistry. PMID 34612623 DOI: 10.1021/acs.analchem.1c03361   
2021 Poudyal RR, Sieg JP, Portz B, Keating CD, Bevilacqua PC. RNA sequence and structure control assembly and function of RNA condensates. Rna (New York, N.Y.). PMID 34551999 DOI: 10.1261/rna.078875.121   
2021 Zhou Y, Yang J, Tian Z, Zeng J, Shen W. Research progress concerning mA methylation and cancer. Oncology Letters. 22: 775. PMID 34589154 DOI: 10.3892/ol.2021.13036   
2021 Jahns H, Degaonkar R, Podbevsek P, Gupta S, Bisbe A, Aluri K, Szeto J, Kumar P, LeBlanc S, Racie T, Brown CR, Castoreno A, Guenther DC, Jadhav V, Maier MA, et al. Small circular interfering RNAs (sciRNAs) as a potent therapeutic platform for gene-silencing. Nucleic Acids Research. PMID 34508350 DOI: 10.1093/nar/gkab724   
2021 Manavski N, Vicente A, Chi W, Meurer J. The Chloroplast Epitranscriptome: Factors, Sites, Regulation, and Detection Methods. Genes. 12. PMID 34440296 DOI: 10.3390/genes12081121   
2021 Telzrow CL, Zwack PJ, Esher Righi S, Dietrich FS, Chan C, Owzar K, Alspaugh JA, Granek JA. Comparative analysis of RNA enrichment methods for preparation of Cryptococcus neoformans RNA sequencing libraries. G3 (Bethesda, Md.). PMID 34518880 DOI: 10.1093/g3journal/jkab301   
2021 Deryusheva S, Talross GJ, Gall JG. SnoRNA guide activities - real and ambiguous. Rna (New York, N.Y.). PMID 34385348 DOI: 10.1261/rna.078916.121   
2021 Mai L, Qiu Y, Lian Z, Chen C, Wang L, Yin Y, Wang S, Yang X, Li Y, Peng W, Luo C, Pan X. MustSeq, an alternative approach for multiplexible strand-specific 3' end sequencing of mRNA transcriptome confers high efficiency and practicality. Rna Biology. 1-12. PMID 34586036 DOI: 10.1080/15476286.2021.1974208   
2021 Grehl C, Schultheiß C, Hoffmann K, Binder M, Altmann T, Grosse I, Kuhlmann M. Detection of SARS-CoV-2 Derived Small RNAs and Changes in Circulating Small RNAs Associated with COVID-19. Viruses. 13. PMID 34452458 DOI: 10.3390/v13081593   
2021 Shivalingappa PKM, Sharma V, Shiras A, Bapat SA. RNA binding motif 47 (RBM47): emerging roles in vertebrate development, RNA editing and cancer. Molecular and Cellular Biochemistry. PMID 34499322 DOI: 10.1007/s11010-021-04256-5   
2021 Shukla A, Perales R, Kennedy S. piRNAs coordinate poly(UG) tailing to prevent aberrant and perpetual gene silencing. Current Biology : Cb. PMID 34428467 DOI: 10.1016/j.cub.2021.07.076   
2021 Furuzono T, Murata A, Okuda S, Mizutani K, Adachi T, Nakatani K. Speeding drug discovery targeting RNAs: An iterative "RNA selection-compounds screening cycle" for exploring RNA-small molecule pairs. Bioorganic & Medicinal Chemistry. 36: 116070. PMID 33773376 DOI: 10.1016/j.bmc.2021.116070   
2021 Cui T, Dou Y, Tan P, Ni Z, Liu T, Wang D, Huang Y, Cai K, Zhao X, Xu D, Lin H, Wang D. RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. Nucleic Acids Research. PMID 34551440 DOI: 10.1093/nar/gkab825   
2021 Lins MRDCR, Amorim LADS, Corrêa GG, Picão BW, Mack M, Cerri MO, Pedrolli DB. Targeting riboswitches with synthetic small RNAs for metabolic engineering. Metabolic Engineering. 68: 59-67. PMID 34517126 DOI: 10.1016/j.ymben.2021.09.003   
2021 Haack AJ, Lim FY, Kennedy DS, Day JH, Adams KN, Lee JJ, Berthier E, Theberge AB. RNA: A Self-Sampling Kit for the Collection of Peripheral Blood and Stabilization of RNA. Analytical Chemistry. PMID 34546711 DOI: 10.1021/acs.analchem.1c02008   
2021 Guo L, Ma H, Kong Y, Leng G, Liu G, Zhang Y. LncRNA TNK2-AS1/miR-125a-5p axis promotes tumor growth and modulated PI3K/AKT pathway. Journal of Gastroenterology and Hepatology. PMID 34494305 DOI: 10.1111/jgh.15683   
2021 Stoute J, Liu KF. CLIP-Seq to identify targets and interactions of RNA binding proteins and RNA modifying enzymes. Methods in Enzymology. 658: 419-434. PMID 34517957 DOI: 10.1016/bs.mie.2021.08.001   
2021 Zhang W, Qiu Y, Zhou L, Yin J, Wang L, Zhi H, Xu K. Development of a Viral RdRp-Assisted Gene Silencing System and Its Application in the Identification of Host Factors of Plant (+)RNA Virus. Frontiers in Microbiology. 12: 682921. PMID 34394029 DOI: 10.3389/fmicb.2021.682921   
2021 Shen H, Gonskikh Y, Stoute J, Liu KF. Human DIMT1 generates NA-dimethylation-containing small RNAs. The Journal of Biological Chemistry. 101146. PMID 34473991 DOI: 10.1016/j.jbc.2021.101146   
2021 Zhang Y, Yang L, Chen LL. Characterization of Circular RNAs. Methods in Molecular Biology (Clifton, N.J.). 2372: 179-192. PMID 34417752 DOI: 10.1007/978-1-0716-1697-0_16   
2021 Lukas O, Simmel FC. Controlling gene expression in mammalian cells using multiplexed conditional guide RNAs for Cas12a. Angewandte Chemie (International Ed. in English). PMID 34533878 DOI: 10.1002/anie.202107258   
2021 Dai W, Li A, Yu NJ, Nguyen T, Leach RW, Wühr M, Kleiner RE. Activity-based RNA-modifying enzyme probing reveals DUS3L-mediated dihydrouridylation. Nature Chemical Biology. PMID 34556860 DOI: 10.1038/s41589-021-00874-8   
2021 Messa L, Barzaghini B, Rey F, Pandini C, Zuccotti GV, Cereda C, Carelli S, Raimondi MT. Neural Precursor Cells Expanded Inside the 3D Micro-Scaffold Nichoid Present Different Non-Coding RNAs Profiles and Transcript Isoforms Expression: Possible Epigenetic Modulation by 3D Growth. Biomedicines. 9. PMID 34572306 DOI: 10.3390/biomedicines9091120   
2021 Wang YF, Ge CM, Yin HZ, Dai ZH, Dong JP, Ji M, Yang F. Dysregulated N6-methyladenosine (mA) processing in hepatocellular carcinoma. Annals of Hepatology. 100538. PMID 34555511 DOI: 10.1016/j.aohep.2021.100538   
2021 Tzerpos P, Daniel B, Nagy L. Global Run-on Sequencing (GRO-Seq). Methods in Molecular Biology (Clifton, N.J.). 2351: 25-39. PMID 34382182 DOI: 10.1007/978-1-0716-1597-3_2   
2021 Yang R, Zou Z, He L, Deng X, Wang H, Huang Z, Xue Q, Qing Z, Lei Y, Liu J. Zn2+-Coordination-Driven RNA Assembly with Retained Integrity and Biological Functions. Angewandte Chemie (International Ed. in English). PMID 34405498 DOI: 10.1002/anie.202110404   
2021 Vong JSL, Ji L, Heung MMS, Cheng SH, Wong J, Lai PBS, Wong VWS, Chan SL, Chan HLY, Jiang P, Chan KCA, Chiu RWK, Lo YMD. Single Cell and Plasma RNA Sequencing for RNA Liquid Biopsy for Hepatocellular Carcinoma. Clinical Chemistry. PMID 34463757 DOI: 10.1093/clinchem/hvab116   
2021 Ifill G, Blimkie T, Lee AH, Mackie GA, Chen Q, Stibitz S, Hancock REW, Fernandez RC. RNase III and RNase E Influence Posttranscriptional Regulatory Networks Involved in Virulence Factor Production, Metabolism, and Regulatory RNA Processing in Bordetella pertussis. Msphere. e0065021. PMID 34406853 DOI: 10.1128/mSphere.00650-21   
2021 Devanathan SK, Debnath TK, Xhemalçe B. Facile detection of RNA phospho-methylation in cells and tissues. Methods in Enzymology. 658: 49-72. PMID 34517959 DOI: 10.1016/bs.mie.2021.06.002   
2021 Mukherjee P, Raghava Kurup R, Hundley HA. RNA immunoprecipitation to identify in vivo targets of RNA editing and modifying enzymes. Methods in Enzymology. 658: 137-160. PMID 34517945 DOI: 10.1016/bs.mie.2021.06.005   
2021 Wang S, Wang Z, Su H, Chen F, Ma M, Yu W, Ye G, Cen S, Mi R, Wu X, Deng W, Feng P, Zeng C, Shen H, Wu Y. Effects of long-term culture on the biological characteristics and RNA profiles of human bone-marrow-derived mesenchymal stem cells. Molecular Therapy. Nucleic Acids. 26: 557-574. PMID 34631285 DOI: 10.1016/j.omtn.2021.08.013   
2021 Lou S, Meng F, Yin X, Zhang Y, Han B, Xue Y. Comprehensive Characterization of RNA Processing Factors in Gastric Cancer Identifies a Prognostic Signature for Predicting Clinical Outcomes and Therapeutic Responses. Frontiers in Immunology. 12: 719628. PMID 34413861 DOI: 10.3389/fimmu.2021.719628   
2021 Tanu T, Taniue K, Imamura K, Onoguchi-Mizutani R, Han H, Jensen TH, Akimitsu N. hnRNPH1-MTR4 complex-mediated regulation of stability is critical for expression. Rna Biology. 1-11. PMID 34470577 DOI: 10.1080/15476286.2021.1971439   
2021 Yang P, Havecker E, Bauer M, Diehl C, Hendrix B, Hoffer P, Boyle T, Bradley J, Caruano-Yzermans A, Deikman J. Beyond identity: Understanding the contribution of the 5' nucleotide of the antisense strand to RNAi activity. Plos One. 16: e0256863. PMID 34492058 DOI: 10.1371/journal.pone.0256863