| Year |
Citation |
Score |
| 2023 |
Dandage R, Papkov M, Greco BM, Fishman D, Friesen H, Wang K, Styles E, Kraus O, Grys B, Boone C, Andrews B, Parts L, Kuzmin E. Single-cell imaging of protein dynamics of paralogs reveals mechanisms of gene retention. Biorxiv : the Preprint Server For Biology. PMID 38045359 DOI: 10.1101/2023.11.23.568466 |
0.326 |
|
| 2023 |
Varland S, Silva RD, Kjosås I, Faustino A, Bogaert A, Billmann M, Boukhatmi H, Kellen B, Costanzo M, Drazic A, Osberg C, Chan K, Zhang X, Tong AHY, Andreazza S, ... ... Andrews BJ, et al. N-terminal acetylation shields proteins from degradation and promotes age-dependent motility and longevity. Nature Communications. 14: 6774. PMID 37891180 DOI: 10.1038/s41467-023-42342-y |
0.698 |
|
| 2023 |
Suresh HG, Bonneil E, Albert B, Dominique C, Costanzo M, Pons C, David Masinas MP, Shuteriqi E, Shore D, Henras AK, Thibault P, Boone C, Andrews BJ. K29-linked unanchored polyubiquitin chains disrupt ribosome biogenesis and direct ribosomal proteins to the Intranuclear Quality control compartment (INQ). Biorxiv : the Preprint Server For Biology. PMID 37205480 DOI: 10.1101/2023.05.03.539259 |
0.573 |
|
| 2023 |
Billmann M, Ward HN, Aregger M, Costanzo M, Andrews BJ, Boone C, Moffat J, Myers CL. Reproducibility metrics for context-specific CRISPR screens. Cell Systems. 14: 418-422.e2. PMID 37201508 DOI: 10.1016/j.cels.2023.04.003 |
0.693 |
|
| 2022 |
Conti MM, Ghizzoni JM, Gil-Bona A, Wang W, Costanzo M, Li R, Flynn MJ, Zhu LJ, Myers CL, Boone C, Andrews BJ, Benanti JA. Repression of essential cell cycle genes increases cellular fitness. Plos Genetics. 18: e1010349. PMID 36037231 DOI: 10.1371/journal.pgen.1010349 |
0.679 |
|
| 2022 |
Yeung CHL, Sahin N, Andrews B. Phenomics approaches to understand genetic networks and gene function in yeast. Biochemical Society Transactions. PMID 35285506 DOI: 10.1042/BST20210285 |
0.383 |
|
| 2021 |
Arita Y, Kim G, Li Z, Friesen H, Turco G, Wang RY, Climie D, Usaj M, Hotz M, Stoops EH, Baryshnikova A, Boone C, Botstein D, Andrews BJ, McIsaac RS. A genome-scale yeast library with inducible expression of individual genes. Molecular Systems Biology. 17: e10207. PMID 34096681 DOI: 10.15252/msb.202110207 |
0.546 |
|
| 2021 |
Rahman M, Billmann M, Costanzo M, Aregger M, Tong AHY, Chan K, Ward HN, Brown KR, Andrews BJ, Boone C, Moffat J, Myers CL. A method for benchmarking genetic screens reveals a predominant mitochondrial bias. Molecular Systems Biology. 17: e10013. PMID 34018332 DOI: 10.15252/msb.202010013 |
0.726 |
|
| 2021 |
Kong KE, Fischer B, Meurer M, Kats I, Li Z, Rühle F, Barry JD, Kirrmaier D, Chevyreva V, San Luis BJ, Costanzo M, Huber W, Andrews BJ, Boone C, Knop M, et al. Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase. Molecular Cell. PMID 33974913 DOI: 10.1016/j.molcel.2021.04.018 |
0.573 |
|
| 2021 |
Costanzo M, Hou J, Messier V, Nelson J, Rahman M, VanderSluis B, Wang W, Pons C, Ross C, Ušaj M, San Luis BJ, Shuteriqi E, Koch EN, Aloy P, Myers CL, ... Andrews B, et al. Environmental robustness of the global yeast genetic interaction network. Science (New York, N.Y.). 372. PMID 33958448 DOI: 10.1126/science.abf8424 |
0.69 |
|
| 2021 |
Kuzmin E, Andrews BJ, Boone C. Trigenic Synthetic Genetic Array (τ-SGA) Technique for Complex Interaction Analysis. Methods in Molecular Biology (Clifton, N.J.). 2212: 377-400. PMID 33733368 DOI: 10.1007/978-1-0716-0947-7_23 |
0.397 |
|
| 2021 |
Kuzmin E, Rahman M, VanderSluis B, Costanzo M, Myers CL, Andrews BJ, Boone C. τ-SGA: synthetic genetic array analysis for systematically screening and quantifying trigenic interactions in yeast. Nature Protocols. PMID 33462440 DOI: 10.1038/s41596-020-00456-3 |
0.639 |
|
| 2020 |
Kintaka R, Makanae K, Namba S, Kato H, Kito K, Ohnuki S, Ohya Y, Andrews BJ, Boone C, Moriya H. Genetic profiling of protein burden and nuclear export overload. Elife. 9. PMID 33146608 DOI: 10.7554/eLife.54080 |
0.344 |
|
| 2020 |
van Leeuwen J, Pons C, Tan G, Wang JZ, Hou J, Weile J, Gebbia M, Liang W, Shuteriqi E, Li Z, Lopes M, Ušaj M, Dos Santos Lopes A, van Lieshout N, Myers CL, ... ... Andrews BJ, et al. Systematic analysis of bypass suppression of essential genes. Molecular Systems Biology. 16: e9828. PMID 32939983 DOI: 10.15252/Msb.20209828 |
0.631 |
|
| 2020 |
Masinas MPD, Mattiazzi Usaj M, Usaj M, Boone C, Andrews BJ. TheCellVision.org: A Database for Visualizing and Mining High-Content Cell Imaging Projects. G3 (Bethesda, Md.). PMID 32934016 DOI: 10.1534/G3.120.401570 |
0.49 |
|
| 2020 |
Aregger M, Lawson KA, Billmann M, Costanzo M, Tong AHY, Chan K, Rahman M, Brown KR, Ross C, Usaj M, Nedyalkova L, Sizova O, Habsid A, Pawling J, Lin ZY, ... ... Andrews BJ, et al. Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism. Nature Metabolism. 2: 499-513. PMID 32694731 DOI: 10.1038/s42255-020-0211-z |
0.721 |
|
| 2020 |
Kuzmin E, VanderSluis B, Nguyen Ba AN, Wang W, Koch EN, Usaj M, Khmelinskii A, Usaj MM, van Leeuwen J, Kraus O, Tresenrider A, Pryszlak M, Hu MC, Varriano B, Costanzo M, ... ... Andrews BJ, et al. Exploring whole-genome duplicate gene retention with complex genetic interaction analysis. Science (New York, N.Y.). 368. PMID 32586993 DOI: 10.1126/Science.Aaz5667 |
0.756 |
|
| 2020 |
Mattiazzi Usaj M, Sahin N, Friesen H, Pons C, Usaj M, Masinas MPD, Shuteriqi E, Shkurin A, Aloy P, Morris Q, Boone C, Andrews BJ. Systematic genetics and single-cell imaging reveal widespread morphological pleiotropy and cell-to-cell variability. Molecular Systems Biology. 16: e9243. PMID 32064787 DOI: 10.15252/Msb.20199243 |
0.609 |
|
| 2019 |
Mair B, Moffat J, Boone C, Andrews BJ. Genetic interaction networks in cancer cells. Current Opinion in Genetics & Development. 54: 64-72. PMID 30974317 DOI: 10.1016/J.Gde.2019.03.002 |
0.734 |
|
| 2019 |
Costanzo M, Kuzmin E, van Leeuwen J, Mair B, Moffat J, Boone C, Andrews B. Global Genetic Networks and the Genotype-to-Phenotype Relationship. Cell. 177: 85-100. PMID 30901552 DOI: 10.1016/J.Cell.2019.01.033 |
0.813 |
|
| 2019 |
Hou J, Tan G, Fink GR, Andrews BJ, Boone C. Complex modifier landscape underlying genetic background effects. Proceedings of the National Academy of Sciences of the United States of America. PMID 30804202 DOI: 10.1073/Pnas.1820915116 |
0.633 |
|
| 2018 |
Huei-Yi Lee A, Bastedo DP, Youn JY, Lo T, Middleton MA, Kireeva I, Lee JY, Sharifpoor S, Baryshnikova A, Zhang J, Wang PW, Peisajovich SG, Costanzo M, Andrews BJ, Boone CM, et al. Identifying Type III Secreted Effector Function via a Yeast Genomic Screen. G3 (Bethesda, Md.). PMID 30573466 DOI: 10.1534/G3.118.200877 |
0.778 |
|
| 2018 |
VanderSluis B, Costanzo M, Billmann M, Ward HN, Myers CL, Andrews BJ, Boone C. Integrating genetic and protein-protein interaction networks maps a functional wiring diagram of a cell. Current Opinion in Microbiology. 45: 170-179. PMID 30059827 DOI: 10.1016/J.Mib.2018.06.004 |
0.763 |
|
| 2018 |
Hou J, van Leeuwen J, Andrews BJ, Boone C. Genetic Network Complexity Shapes Background-Dependent Phenotypic Expression. Trends in Genetics : Tig. PMID 29903533 DOI: 10.1016/J.Tig.2018.05.006 |
0.626 |
|
| 2018 |
Kuzmin E, VanderSluis B, Wang W, Tan G, Deshpande R, Chen Y, Usaj M, Balint A, Mattiazzi Usaj M, van Leeuwen J, Koch EN, Pons C, Dagilis AJ, Pryszlak M, Wang JZY, ... ... Andrews BJ, et al. Systematic analysis of complex genetic interactions. Science (New York, N.Y.). 360. PMID 29674565 DOI: 10.1126/Science.Aao1729 |
0.835 |
|
| 2017 |
van Leeuwen J, Boone C, Andrews BJ. Mapping a diversity of genetic interactions in yeast. Current Opinion in Systems Biology. 6: 14-21. PMID 30505984 DOI: 10.1016/J.Coisb.2017.08.002 |
0.616 |
|
| 2017 |
Piotrowski JS, Li SC, Deshpande R, Simpkins SW, Nelson J, Yashiroda Y, Barber JM, Safizadeh H, Wilson E, Okada H, Gebre AA, Kubo K, Torres NP, LeBlanc MA, Andrusiak K, ... Andrews B, et al. Errata: Functional annotation of chemical libraries across diverse biological processes. Nature Chemical Biology. 13: 1286. PMID 29161247 DOI: 10.1038/nchembio1217-1286a |
0.55 |
|
| 2017 |
Piotrowski JS, Li SC, Deshpande R, Simpkins SW, Nelson J, Yashiroda Y, Barber JM, Safizadeh H, Wilson E, Okada H, Gebre AA, Kubo K, Torres NP, LeBlanc MA, Andrusiak K, ... Andrews B, et al. Errata: Functional annotation of chemical libraries across diverse biological processes. Nature Chemical Biology. 13: 1286. PMID 29161244 DOI: 10.1038/nchembio1217-1286b |
0.55 |
|
| 2017 |
Xie JL, Qin L, Miao Z, Grys BT, Diaz JC, Ting K, Krieger JR, Tong J, Tan K, Leach MD, Ketela T, Moran MF, Krysan DJ, Boone C, Andrews BJ, et al. The Candida albicans transcription factor Cas5 couples stress responses, drug resistance and cell cycle regulation. Nature Communications. 8: 499. PMID 28894103 DOI: 10.1038/S41467-017-00547-Y |
0.512 |
|
| 2017 |
Verster AJ, Styles EB, Mateo A, Derry BW, Andrews BJ, Fraser AG. Taxonomically Restricted Genes with Essential Functions Frequently Play Roles in Chromosome Segregation in Caenorhabditis elegans and Saccharomyces cerevisiae. G3 (Bethesda, Md.). PMID 28839119 DOI: 10.1534/G3.117.300193 |
0.351 |
|
| 2017 |
Piotrowski JS, Li SC, Deshpande R, Simpkins SW, Nelson J, Yashiroda Y, Barber JM, Safizadeh H, Wilson E, Okada H, Gebre AA, Kubo K, Torres NP, LeBlanc MA, Andrusiak K, ... Andrews B, et al. Functional annotation of chemical libraries across diverse biological processes. Nature Chemical Biology. PMID 28759014 DOI: 10.1038/Nchembio.2436 |
0.74 |
|
| 2017 |
Hart T, Tong AHY, Chan K, Van Leeuwen J, Seetharaman A, Aregger M, Chandrashekhar M, Hustedt N, Seth S, Noonan A, Habsid A, Sizova O, Nedyalkova L, Climie R, Tworzyanski L, ... ... Andrews BJ, et al. Evaluation and Design of Genome-Wide CRISPR/SpCas9 Knockout Screens. G3 (Bethesda, Md.). PMID 28655737 DOI: 10.1534/G3.117.041277 |
0.685 |
|
| 2017 |
van Leeuwen J, Pons C, Boone C, Andrews BJ. Mechanisms of suppression: The wiring of genetic resilience. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28582599 DOI: 10.1002/Bies.201700042 |
0.576 |
|
| 2017 |
Yang F, Sun S, Tan G, Costanzo M, Hill DE, Vidal M, Andrews BJ, Boone C, Roth FP. Identifying pathogenicity of human variants via paralog-based yeast complementation. Plos Genetics. 13: e1006779. PMID 28542158 DOI: 10.1371/Journal.Pgen.1006779 |
0.72 |
|
| 2017 |
Kraus OZ, Grys BT, Ba J, Chong Y, Frey BJ, Boone C, Andrews BJ. Automated analysis of high-content microscopy data with deep learning. Molecular Systems Biology. 13: 924. PMID 28420678 DOI: 10.15252/Msb.20177551 |
0.473 |
|
| 2017 |
Usaj M, Tan Y, Wang W, VanderSluis B, Zou A, Myers CL, Costanzo M, Andrews B, Boone C. TheCellMap.org: A Web-Accessible Database for Visualizing and Mining the Global Yeast Genetic Interaction Network. G3 (Bethesda, Md.). PMID 28325812 DOI: 10.1534/G3.117.040220 |
0.754 |
|
| 2017 |
Youn JY, Friesen H, Nguyen Ba AN, Liang W, Messier V, Cox MJ, Moses AM, Andrews B. Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library. G3 (Bethesda, Md.). PMID 28122947 DOI: 10.1534/G3.116.038471 |
0.502 |
|
| 2016 |
Grys BT, Lo DS, Sahin N, Kraus OZ, Morris Q, Boone C, Andrews BJ. Machine learning and computer vision approaches for phenotypic profiling. The Journal of Cell Biology. PMID 27940887 DOI: 10.1083/Jcb.201610026 |
0.451 |
|
| 2016 |
van Leeuwen J, Pons C, Mellor JC, Yamaguchi TN, Friesen H, Koschwanez J, Ušaj MM, Pechlaner M, Takar M, Ušaj M, VanderSluis B, Andrusiak K, Bansal P, Baryshnikova A, Boone CE, ... ... Andrews BJ, et al. Exploring genetic suppression interactions on a global scale. Science (New York, N.Y.). 354. PMID 27811238 DOI: 10.1126/Science.Aag0839 |
0.759 |
|
| 2016 |
Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, ... Andrews B, et al. A global genetic interaction network maps a wiring diagram of cellular function. Science (New York, N.Y.). 353. PMID 27708008 DOI: 10.1126/Science.Aaf1420 |
0.844 |
|
| 2016 |
Styles EB, Founk KJ, Zamparo LA, Sing TL, Altintas D, Ribeyre C, Ribaud V, Rougemont J, Mayhew D, Costanzo M, Usaj M, Verster AJ, Koch EN, Novarina D, Graf M, ... ... Andrews BJ, et al. Exploring Quantitative Yeast Phenomics with Single-Cell Analysis of DNA Damage Foci. Cell Systems. PMID 27617677 DOI: 10.1016/J.Cels.2016.08.008 |
0.713 |
|
| 2016 |
Duffy S, Fam HK, Wang YK, Styles EB, Kim JH, Ang JS, Singh T, Larionov V, Shah SP, Andrews B, Boerkoel CF, Hieter P. Overexpression screens identify conserved dosage chromosome instability genes in yeast and human cancer. Proceedings of the National Academy of Sciences of the United States of America. PMID 27551064 DOI: 10.1073/Pnas.1611839113 |
0.441 |
|
| 2016 |
Mattiazzi Usaj M, Styles EB, Verster AJ, Friesen H, Boone C, Andrews BJ. High-Content Screening for Quantitative Cell Biology. Trends in Cell Biology. PMID 27118708 DOI: 10.1016/J.Tcb.2016.03.008 |
0.565 |
|
| 2016 |
Styles EB, Friesen H, Boone C, Andrews BJ. High-Throughput Microscopy-Based Screening in Saccharomyces cerevisiae. Cold Spring Harbor Protocols. 2016: pdb.top087593. PMID 27037080 DOI: 10.1101/Pdb.Top087593 |
0.522 |
|
| 2016 |
Kuzmin E, Costanzo M, Andrews B, Boone C. Synthetic Genetic Arrays: Automation of Yeast Genetics. Cold Spring Harbor Protocols. 2016: pdb.top086652. PMID 27037078 DOI: 10.1101/Pdb.Top086652 |
0.801 |
|
| 2016 |
Kuzmin E, Costanzo M, Andrews B, Boone C. Synthetic Genetic Array Analysis. Cold Spring Harbor Protocols. 2016: pdb.prot088807. PMID 27037072 DOI: 10.1101/Pdb.Prot088807 |
0.782 |
|
| 2016 |
Cox MJ, Chong YT, Boone C, Andrews B. Liquid Growth of Arrayed Fluorescently Tagged Saccharomyces cerevisiae Strains for Live-Cell High-Throughput Microscopy Screens. Cold Spring Harbor Protocols. 2016: pdb.prot088799. PMID 27037071 DOI: 10.1101/Pdb.Prot088799 |
0.568 |
|
| 2016 |
Sun S, Yang F, Tan G, Costanzo M, Oughtred R, Hirschman J, Theesfeld C, Bansal P, Sahni N, Yi S, Yu A, Tyagi T, Tie C, Hill DE, Vidal M, ... Andrews BJ, et al. An extended set of yeast-based functional assays accurately identifies human disease mutations. Genome Research. PMID 26975778 DOI: 10.1101/Gr.192526.115 |
0.704 |
|
| 2016 |
Yang X, Coulombe-Huntington J, Kang S, Sheynkman GM, Hao T, Richardson A, Sun S, Yang F, Shen YA, Murray RR, Spirohn K, Begg BE, Duran-Frigola M, MacWilliams A, Pevzner SJ, ... Andrews B, et al. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. Cell. 164: 805-817. PMID 26871637 DOI: 10.1016/J.Cell.2016.01.029 |
0.752 |
|
| 2015 |
Boone C, Andrews BJ. HUMAN GENOME. The indispensable genome. Science (New York, N.Y.). 350: 1028-9. PMID 26612934 DOI: 10.1126/Science.Aad7925 |
0.557 |
|
| 2015 |
van Leeuwen J, Andrews B, Boone C, Tan G. Construction of Multifragment Plasmids by Homologous Recombination in Yeast. Cold Spring Harbor Protocols. 2015: pdb.top084111. PMID 26330631 DOI: 10.1101/Pdb.Top084111 |
0.564 |
|
| 2015 |
van Leeuwen J, Andrews B, Boone C, Tan G. Rapid and Efficient Plasmid Construction by Homologous Recombination in Yeast. Cold Spring Harbor Protocols. 2015: pdb.prot085100. PMID 26330622 DOI: 10.1101/Pdb.Prot085100 |
0.519 |
|
| 2015 |
Koh JL, Chong YT, Friesen H, Moses A, Boone C, Andrews BJ, Moffat J. CYCLoPs: A Comprehensive Database Constructed from Automated Analysis of Protein Abundance and Subcellular Localization Patterns in Saccharomyces cerevisiae. G3 (Bethesda, Md.). 5: 1223-32. PMID 26048563 DOI: 10.1534/G3.115.017830 |
0.674 |
|
| 2015 |
Chong YT, Koh JL, Friesen H, Duffy K, Cox MJ, Moses A, Moffat J, Boone C, Andrews BJ. Yeast Proteome Dynamics from Single Cell Imaging and Automated Analysis. Cell. 161: 1413-24. PMID 26046442 DOI: 10.1016/J.Cell.2015.04.051 |
0.664 |
|
| 2014 |
Kurat CF, Lambert JP, Petschnigg J, Friesen H, Pawson T, Rosebrock A, Gingras AC, Fillingham J, Andrews B. Cell cycle-regulated oscillator coordinates core histone gene transcription through histone acetylation. Proceedings of the National Academy of Sciences of the United States of America. 111: 14124-9. PMID 25228766 DOI: 10.1073/Pnas.1414024111 |
0.354 |
|
| 2014 |
Kuzmin E, Sharifpoor S, Baryshnikova A, Costanzo M, Myers CL, Andrews BJ, Boone C. Synthetic genetic array analysis for global mapping of genetic networks in yeast. Methods in Molecular Biology (Clifton, N.J.). 1205: 143-68. PMID 25213244 DOI: 10.1007/978-1-4939-1363-3_10 |
0.845 |
|
| 2014 |
Parts L, Liu YC, Tekkedil MM, Steinmetz LM, Caudy AA, Fraser AG, Boone C, Andrews BJ, Rosebrock AP. Heritability and genetic basis of protein level variation in an outbred population. Genome Research. 24: 1363-70. PMID 24823668 DOI: 10.1101/Gr.170506.113 |
0.592 |
|
| 2014 |
Rossi D, Galvão FC, Bellato HM, Boldrin PE, Andrews BJ, Valentini SR, Zanelli CF. eIF5A has a function in the cotranslational translocation of proteins into the ER. Amino Acids. 46: 645-53. PMID 24306454 DOI: 10.1007/s00726-013-1618-6 |
0.349 |
|
| 2014 |
Kurat CF, Recht J, Radovani E, Durbic T, Andrews B, Fillingham J. Regulation of histone gene transcription in yeast. Cellular and Molecular Life Sciences : Cmls. 71: 599-613. PMID 23974242 DOI: 10.1007/S00018-013-1443-9 |
0.386 |
|
| 2013 |
Vizeacoumar FJ, Arnold R, Vizeacoumar FS, Chandrashekhar M, Buzina A, Young JT, Kwan JH, Sayad A, Mero P, Lawo S, Tanaka H, Brown KR, Baryshnikova A, Mak AB, Fedyshyn Y, ... Andrews B, et al. A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities. Molecular Systems Biology. 9: 696. PMID 24104479 DOI: 10.1038/Msb.2013.54 |
0.74 |
|
| 2013 |
Styles E, Youn JY, Mattiazzi Usaj M, Andrews B. Functional genomics in the study of yeast cell polarity: moving in the right direction. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20130118. PMID 24062589 DOI: 10.1098/Rstb.2013.0118 |
0.389 |
|
| 2013 |
Baryshnikova A, VanderSluis B, Costanzo M, Myers CL, Cha RS, Andrews B, Boone C. Global linkage map connects meiotic centromere function to chromosome size in budding yeast. G3 (Bethesda, Md.). 3: 1741-51. PMID 23979930 DOI: 10.1534/G3.113.007377 |
0.712 |
|
| 2013 |
Neumüller RA, Gross T, Samsonova AA, Vinayagam A, Buckner M, Founk K, Hu Y, Sharifpoor S, Rosebrock AP, Andrews B, Winston F, Perrimon N. Conserved regulators of nucleolar size revealed by global phenotypic analyses. Science Signaling. 6: ra70. PMID 23962978 DOI: 10.1126/Scisignal.2004145 |
0.796 |
|
| 2013 |
Baryshnikova A, Costanzo M, Myers CL, Andrews B, Boone C. Genetic interaction networks: toward an understanding of heritability. Annual Review of Genomics and Human Genetics. 14: 111-33. PMID 23808365 DOI: 10.1146/Annurev-Genom-082509-141730 |
0.773 |
|
| 2013 |
Wagih O, Usaj M, Baryshnikova A, VanderSluis B, Kuzmin E, Costanzo M, Myers CL, Andrews BJ, Boone CM, Parts L. SGAtools: one-stop analysis and visualization of array-based genetic interaction screens. Nucleic Acids Research. 41: W591-6. PMID 23677617 DOI: 10.1093/nar/gkt400 |
0.677 |
|
| 2013 |
Bastajian N, Friesen H, Andrews BJ. Bck2 acts through the MADS box protein Mcm1 to activate cell-cycle-regulated genes in budding yeast. Plos Genetics. 9: e1003507. PMID 23675312 DOI: 10.1371/Journal.Pgen.1003507 |
0.817 |
|
| 2013 |
Srikumar T, Lewicki MC, Costanzo M, Tkach JM, van Bakel H, Tsui K, Johnson ES, Brown GW, Andrews BJ, Boone C, Giaever G, Nislow C, Raught B. Global analysis of SUMO chain function reveals multiple roles in chromatin regulation. The Journal of Cell Biology. 201: 145-63. PMID 23547032 DOI: 10.1083/Jcb.201210019 |
0.735 |
|
| 2012 |
Douglas AC, Smith AM, Sharifpoor S, Yan Z, Durbic T, Heisler LE, Lee AY, Ryan O, Göttert H, Surendra A, van Dyk D, Giaever G, Boone C, Nislow C, Andrews BJ. Functional analysis with a barcoder yeast gene overexpression system. G3 (Bethesda, Md.). 2: 1279-89. PMID 23050238 DOI: 10.1534/G3.112.003400 |
0.826 |
|
| 2012 |
Ryan O, Shapiro RS, Kurat CF, Mayhew D, Baryshnikova A, Chin B, Lin ZY, Cox MJ, Vizeacoumar F, Cheung D, Bahr S, Tsui K, Tebbji F, Sellam A, Istel F, ... Andrews B, et al. Global gene deletion analysis exploring yeast filamentous growth. Science (New York, N.Y.). 337: 1353-6. PMID 22984072 DOI: 10.1126/Science.1224339 |
0.737 |
|
| 2012 |
Koch EN, Costanzo M, Bellay J, Deshpande R, Chatfield-Reed K, Chua G, D'Urso G, Andrews BJ, Boone C, Myers CL. Conserved rules govern genetic interaction degree across species. Genome Biology. 13: R57. PMID 22747640 DOI: 10.1186/Gb-2012-13-7-R57 |
0.757 |
|
| 2012 |
Kaluarachchi Duffy S, Friesen H, Baryshnikova A, Lambert JP, Chong YT, Figeys D, Andrews B. Exploring the yeast acetylome using functional genomics. Cell. 149: 936-48. PMID 22579291 DOI: 10.1016/J.Cell.2012.02.064 |
0.505 |
|
| 2012 |
Baryshnikova A, Andrews B. Neighboring-gene effect: a genetic uncertainty principle. Nature Methods. 9: 341, 343. PMID 22453910 DOI: 10.1038/Nmeth.1936 |
0.44 |
|
| 2012 |
Sharifpoor S, van Dyk D, Costanzo M, Baryshnikova A, Friesen H, Douglas AC, Youn JY, VanderSluis B, Myers CL, Papp B, Boone C, Andrews BJ. Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs. Genome Research. 22: 791-801. PMID 22282571 DOI: 10.1101/Gr.129213.111 |
0.844 |
|
| 2012 |
Chong YT, Cox MJ, Andrews B. Proteome-wide screens in Saccharomyces cerevisiae using the yeast GFP collection. Advances in Experimental Medicine and Biology. 736: 169-78. PMID 22161327 DOI: 10.1007/978-1-4419-7210-1_8 |
0.535 |
|
| 2012 |
Jin K, Li J, Vizeacoumar FS, Li Z, Min R, Zamparo L, Vizeacoumar FJ, Datti A, Andrews B, Boone C, Zhang Z. PhenoM: a database of morphological phenotypes caused by mutation of essential genes in Saccharomyces cerevisiae. Nucleic Acids Research. 40: D687-94. PMID 22009677 DOI: 10.1093/Nar/Gkr827 |
0.62 |
|
| 2011 |
Andrews BJ, Sternberg PW, Depellegrin Connelly T. GSA Launches G3: Genes | Genomes | Genetics. G3 (Bethesda, Md.). 1: 1. PMID 22384313 DOI: 10.1534/g3.111.000414 |
0.317 |
|
| 2011 |
Kurat CF, Lambert JP, van Dyk D, Tsui K, van Bakel H, Kaluarachchi S, Friesen H, Kainth P, Nislow C, Figeys D, Fillingham J, Andrews BJ. Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein. Genes & Development. 25: 2489-501. PMID 22156209 DOI: 10.1101/Gad.173427.111 |
0.795 |
|
| 2011 |
Cokol M, Chua HN, Tasan M, Mutlu B, Weinstein ZB, Suzuki Y, Nergiz ME, Costanzo M, Baryshnikova A, Giaever G, Nislow C, Myers CL, Andrews BJ, Boone C, Roth FP. Systematic exploration of synergistic drug pairs. Molecular Systems Biology. 7: 544. PMID 22068327 DOI: 10.1038/Msb.2011.71 |
0.658 |
|
| 2011 |
Liu C, van Dyk D, Choe V, Yan J, Majumder S, Costanzo M, Bao X, Boone C, Huo K, Winey M, Fisk H, Andrews B, Rao H. Ubiquitin ligase Ufd2 is required for efficient degradation of Mps1 kinase. The Journal of Biological Chemistry. 286: 43660-7. PMID 22045814 DOI: 10.1074/Jbc.M111.286229 |
0.719 |
|
| 2011 |
Boettner DR, Friesen H, Andrews B, Lemmon SK. Clathrin light chain directs endocytosis by influencing the binding of the yeast Hip1R homologue, Sla2, to F-actin. Molecular Biology of the Cell. 22: 3699-714. PMID 21849475 DOI: 10.1091/Mbc.E11-07-0628 |
0.323 |
|
| 2011 |
Bellay J, Atluri G, Sing TL, Toufighi K, Costanzo M, Ribeiro PS, Pandey G, Baller J, VanderSluis B, Michaut M, Han S, Kim P, Brown GW, Andrews BJ, Boone C, et al. Putting genetic interactions in context through a global modular decomposition. Genome Research. 21: 1375-87. PMID 21715556 DOI: 10.1101/Gr.117176.110 |
0.766 |
|
| 2011 |
Szappanos B, Kovács K, Szamecz B, Honti F, Costanzo M, Baryshnikova A, Gelius-Dietrich G, Lercher MJ, Jelasity M, Myers CL, Andrews BJ, Boone C, Oliver SG, Pál C, Papp B. An integrated approach to characterize genetic interaction networks in yeast metabolism. Nature Genetics. 43: 656-62. PMID 21623372 DOI: 10.1038/Ng.846 |
0.75 |
|
| 2011 |
Magtanong L, Ho CH, Barker SL, Jiao W, Baryshnikova A, Bahr S, Smith AM, Heisler LE, Choy JS, Kuzmin E, Andrusiak K, Kobylianski A, Li Z, Costanzo M, Basrai MA, ... Andrews B, et al. Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell. Nature Biotechnology. 29: 505-11. PMID 21572441 DOI: 10.1038/Nbt.1855 |
0.791 |
|
| 2011 |
Sharifpoor S, Nguyen Ba AN, Youn JY, Young JY, van Dyk D, Friesen H, Douglas AC, Kurat CF, Chong YT, Founk K, Moses AM, Andrews BJ. A quantitative literature-curated gold standard for kinase-substrate pairs. Genome Biology. 12: R39. PMID 21492431 DOI: 10.1186/Gb-2011-12-4-R39 |
0.745 |
|
| 2011 |
Li Z, Vizeacoumar FJ, Bahr S, Li J, Warringer J, Vizeacoumar FS, Min R, Vandersluis B, Bellay J, Devit M, Fleming JA, Stephens A, Haase J, Lin ZY, Baryshnikova A, ... Andrews B, et al. Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nature Biotechnology. 29: 361-7. PMID 21441928 DOI: 10.1038/Nbt.1832 |
0.77 |
|
| 2011 |
Michaut M, Baryshnikova A, Costanzo M, Myers CL, Andrews BJ, Boone C, Bader GD. Protein complexes are central in the yeast genetic landscape. Plos Computational Biology. 7: e1001092. PMID 21390331 DOI: 10.1371/Journal.Pcbi.1001092 |
0.77 |
|
| 2011 |
Bellay J, Han S, Michaut M, Kim T, Costanzo M, Andrews BJ, Boone C, Bader GD, Myers CL, Kim PM. Bringing order to protein disorder through comparative genomics and genetic interactions. Genome Biology. 12: R14. PMID 21324131 DOI: 10.1186/Gb-2011-12-2-R14 |
0.659 |
|
| 2011 |
Costanzo M, Baryshnikova A, Myers CL, Andrews B, Boone C. Charting the genetic interaction map of a cell. Current Opinion in Biotechnology. 22: 66-74. PMID 21111604 DOI: 10.1016/J.Copbio.2010.11.001 |
0.791 |
|
| 2010 |
VanderSluis B, Bellay J, Musso G, Costanzo M, Papp B, Vizeacoumar FJ, Baryshnikova A, Andrews B, Boone C, Myers CL. Genetic interactions reveal the evolutionary trajectories of duplicate genes. Molecular Systems Biology. 6: 429. PMID 21081923 DOI: 10.1038/Msb.2010.82 |
0.787 |
|
| 2010 |
Baryshnikova A, Costanzo M, Kim Y, Ding H, Koh J, Toufighi K, Youn JY, Ou J, San Luis BJ, Bandyopadhyay S, Hibbs M, Hess D, Gingras AC, Bader GD, Troyanskaya OG, ... Andrews B, et al. Quantitative analysis of fitness and genetic interactions in yeast on a genome scale. Nature Methods. 7: 1017-24. PMID 21076421 DOI: 10.1038/Nmeth.1534 |
0.785 |
|
| 2010 |
Baryshnikova A, Costanzo M, Dixon S, Vizeacoumar FJ, Myers CL, Andrews B, Boone C. Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe. Methods in Enzymology. 470: 145-79. PMID 20946810 DOI: 10.1016/S0076-6879(10)70007-0 |
0.795 |
|
| 2010 |
Kahana S, Pnueli L, Kainth P, Sassi HE, Andrews B, Kassir Y. Functional dissection of IME1 transcription using quantitative promoter-reporter screening. Genetics. 186: 829-41. PMID 20739709 DOI: 10.1534/Genetics.110.122200 |
0.437 |
|
| 2010 |
Liu C, van Dyk D, Xu P, Choe V, Pan H, Peng J, Andrews B, Rao H. Ubiquitin chain elongation enzyme Ufd2 regulates a subset of Doa10 substrates. The Journal of Biological Chemistry. 285: 10265-72. PMID 20159987 DOI: 10.1074/Jbc.M110.110551 |
0.354 |
|
| 2010 |
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, ... ... Andrews BJ, et al. The genetic landscape of a cell. Science (New York, N.Y.). 327: 425-31. PMID 20093466 DOI: 10.1126/Science.1180823 |
0.779 |
|
| 2010 |
Vizeacoumar FJ, van Dyk N, S Vizeacoumar F, Cheung V, Li J, Sydorskyy Y, Case N, Li Z, Datti A, Nislow C, Raught B, Zhang Z, Frey B, Bloom K, Boone C, ... Andrews BJ, et al. Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis. The Journal of Cell Biology. 188: 69-81. PMID 20065090 DOI: 10.1083/Jcb.200909013 |
0.657 |
|
| 2010 |
Kainth P, Andrews B. Quantitative cell array screening to identify regulators of gene expression. Briefings in Functional Genomics. 9: 13-23. PMID 19952074 DOI: 10.1093/Bfgp/Elp047 |
0.45 |
|
| 2010 |
Traven A, Lo TL, Pike BL, Friesen H, Guzzo J, Andrews B, Heierhorst J. Dual functions of Mdt1 in genome maintenance and cell integrity pathways in Saccharomyces cerevisiae. Yeast (Chichester, England). 27: 41-52. PMID 19894211 DOI: 10.1002/Yea.1730 |
0.437 |
|
| 2010 |
Koh JL, Ding H, Costanzo M, Baryshnikova A, Toufighi K, Bader GD, Myers CL, Andrews BJ, Boone C. DRYGIN: a database of quantitative genetic interaction networks in yeast. Nucleic Acids Research. 38: D502-7. PMID 19880385 DOI: 10.1093/Nar/Gkp820 |
0.77 |
|
| 2010 |
Michaut M, Baryshnikova A, Costanzo M, Myers CL, Andrews B, Boone C, Bader GD. Exploring the Monochromatic Landscape in Yeast using Genetic Interactions and Known Processes Reveals the Importance of Protein Complexes F1000research. 1. DOI: 10.7490/F1000Research.266.1 |
0.772 |
|
| 2009 |
Liu C, van Dyk D, Li Y, Andrews B, Rao H. A genome-wide synthetic dosage lethality screen reveals multiple pathways that require the functioning of ubiquitin-binding proteins Rad23 and Dsk2. Bmc Biology. 7: 75. PMID 19909498 DOI: 10.1186/1741-7007-7-75 |
0.373 |
|
| 2009 |
Costanzo M, Baryshnikova A, Nislow C, Andrews B, Boone C. You too can play with an edge. Nature Methods. 6: 797-8. PMID 19876015 DOI: 10.1038/Nmeth1109-797 |
0.738 |
|
| 2009 |
Huang D, Kaluarachchi S, van Dyk D, Friesen H, Sopko R, Ye W, Bastajian N, Moffat J, Sassi H, Costanzo M, Andrews BJ. Dual regulation by pairs of cyclin-dependent protein kinases and histone deacetylases controls G1 transcription in budding yeast. Plos Biology. 7: e1000188. PMID 19823668 DOI: 10.1371/Journal.Pbio.1000188 |
0.782 |
|
| 2009 |
Dixon SJ, Costanzo M, Baryshnikova A, Andrews B, Boone C. Systematic mapping of genetic interaction networks. Annual Review of Genetics. 43: 601-25. PMID 19712041 DOI: 10.1146/Annurev.Genet.39.073003.114751 |
0.778 |
|
| 2009 |
Dixon SJ, Andrews BJ, Boone C. Exploring the conservation of synthetic lethal genetic interaction networks. Communicative & Integrative Biology. 2: 78-81. PMID 19704894 DOI: 10.4161/Cib.7501 |
0.611 |
|
| 2009 |
Dhillon N, Raab J, Guzzo J, Szyjka SJ, Gangadharan S, Aparicio OM, Andrews B, Kamakaka RT. DNA polymerase epsilon, acetylases and remodellers cooperate to form a specialized chromatin structure at a tRNA insulator. The Embo Journal. 28: 2583-600. PMID 19629037 DOI: 10.1038/Emboj.2009.198 |
0.3 |
|
| 2009 |
Sassi HE, Bastajian N, Kainth P, Andrews BJ. Reporter-based synthetic genetic array analysis: a functional genomics approach for investigating the cell cycle in Saccharomyces cerevisiae. Methods in Molecular Biology (Clifton, N.J.). 548: 55-73. PMID 19521819 DOI: 10.1007/978-1-59745-540-4_4 |
0.833 |
|
| 2009 |
Zou J, Friesen H, Larson J, Huang D, Cox M, Tatchell K, Andrews B. Regulation of cell polarity through phosphorylation of Bni4 by Pho85 G1 cyclin-dependent kinases in Saccharomyces cerevisiae. Molecular Biology of the Cell. 20: 3239-50. PMID 19458192 DOI: 10.1091/Mbc.E08-12-1255 |
0.45 |
|
| 2009 |
Vizeacoumar FJ, Chong Y, Boone C, Andrews BJ. A picture is worth a thousand words: genomics to phenomics in the yeast Saccharomyces cerevisiae. Febs Letters. 583: 1656-61. PMID 19351535 DOI: 10.1016/J.Febslet.2009.03.068 |
0.577 |
|
| 2009 |
Ho CH, Magtanong L, Barker SL, Gresham D, Nishimura S, Natarajan P, Koh JL, Porter J, Gray CA, Andersen RJ, Giaever G, Nislow C, Andrews B, Botstein D, Graham TR, et al. A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds. Nature Biotechnology. 27: 369-77. PMID 19349972 DOI: 10.1038/Nbt.1534 |
0.689 |
|
| 2009 |
Kainth P, Sassi HE, Peña-Castillo L, Chua G, Hughes TR, Andrews B. Comprehensive genetic analysis of transcription factor pathways using a dual reporter gene system in budding yeast. Methods (San Diego, Calif.). 48: 258-64. PMID 19269327 DOI: 10.1016/J.Ymeth.2009.02.015 |
0.513 |
|
| 2009 |
Makhnevych T, Sydorskyy Y, Xin X, Srikumar T, Vizeacoumar FJ, Jeram SM, Li Z, Bahr S, Andrews BJ, Boone C, Raught B. Global map of SUMO function revealed by protein-protein interaction and genetic networks. Molecular Cell. 33: 124-35. PMID 19150434 DOI: 10.1016/J.Molcel.2008.12.025 |
0.647 |
|
| 2009 |
Kurat CF, Wolinski H, Petschnigg J, Kaluarachchi S, Andrews B, Natter K, Kohlwein SD. Cdk1/Cdc28-dependent activation of the major triacylglycerol lipase Tgl4 in yeast links lipolysis to cell-cycle progression. Molecular Cell. 33: 53-63. PMID 19150427 DOI: 10.1016/J.Molcel.2008.12.019 |
0.787 |
|
| 2008 |
Dixon SJ, Fedyshyn Y, Koh JL, Prasad TS, Chahwan C, Chua G, Toufighi K, Baryshnikova A, Hayles J, Hoe KL, Kim DU, Park HO, Myers CL, Pandey A, Durocher D, ... Andrews BJ, et al. Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 105: 16653-8. PMID 18931302 DOI: 10.1073/Pnas.0806261105 |
0.616 |
|
| 2008 |
Butland G, Babu M, Díaz-Mejía JJ, Bohdana F, Phanse S, Gold B, Yang W, Li J, Gagarinova AG, Pogoutse O, Mori H, Wanner BL, Lo H, Wasniewski J, Christopolous C, ... ... Andrews BJ, et al. eSGA: E. coli synthetic genetic array analysis. Nature Methods. 5: 789-95. PMID 18677321 DOI: 10.1038/Nmeth.1239 |
0.647 |
|
| 2008 |
Yan Z, Costanzo M, Heisler LE, Paw J, Kaper F, Andrews BJ, Boone C, Giaever G, Nislow C. Yeast Barcoders: a chemogenomic application of a universal donor-strain collection carrying bar-code identifiers. Nature Methods. 5: 719-25. PMID 18622398 DOI: 10.1038/Nmeth.1231 |
0.684 |
|
| 2008 |
Hoke SM, Guzzo J, Andrews B, Brandl CJ. Systematic genetic array analysis links the Saccharomyces cerevisiae SAGA/SLIK and NuA4 component Tra1 to multiple cellular processes. Bmc Genetics. 9: 46. PMID 18616809 DOI: 10.1186/1471-2156-9-46 |
0.47 |
|
| 2007 |
Huang D, Friesen H, Andrews B. Pho85, a multifunctional cyclin-dependent protein kinase in budding yeast. Molecular Microbiology. 66: 303-14. PMID 17850263 DOI: 10.1111/J.1365-2958.2007.05914.X |
0.46 |
|
| 2007 |
Mutiu AI, Hoke SM, Genereaux J, Hannam C, MacKenzie K, Jobin-Robitaille O, Guzzo J, Côté J, Andrews B, Haniford DB, Brandl CJ. Structure/function analysis of the phosphatidylinositol-3-kinase domain of yeast tra1. Genetics. 177: 151-66. PMID 17660562 DOI: 10.1534/Genetics.107.074476 |
0.411 |
|
| 2007 |
Boone C, Bussey H, Andrews BJ. Exploring genetic interactions and networks with yeast. Nature Reviews. Genetics. 8: 437-49. PMID 17510664 DOI: 10.1038/Nrg2085 |
0.604 |
|
| 2007 |
Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, Andrews B, et al. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature. 446: 806-10. PMID 17314980 DOI: 10.1038/Nature05649 |
0.662 |
|
| 2006 |
Costanzo M, Giaever G, Nislow C, Andrews B. Experimental approaches to identify genetic networks. Current Opinion in Biotechnology. 17: 472-80. PMID 16962766 DOI: 10.1016/J.Copbio.2006.08.005 |
0.657 |
|
| 2006 |
Parsons AB, Lopez A, Givoni IE, Williams DE, Gray CA, Porter J, Chua G, Sopko R, Brost RL, Ho CH, Wang J, Ketela T, Brenner C, Brill JA, Fernandez GE, ... Andrews B, et al. Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast. Cell. 126: 611-25. PMID 16901791 DOI: 10.1016/J.Cell.2006.06.040 |
0.56 |
|
| 2006 |
Chua G, Morris QD, Sopko R, Robinson MD, Ryan O, Chan ET, Frey BJ, Andrews BJ, Boone C, Hughes TR. Identifying transcription factor functions and targets by phenotypic activation. Proceedings of the National Academy of Sciences of the United States of America. 103: 12045-50. PMID 16880382 DOI: 10.1073/Pnas.0605140103 |
0.575 |
|
| 2006 |
Bussey H, Andrews B, Boone C. From worm genetic networks to complex human diseases. Nature Genetics. 38: 862-3. PMID 16874324 DOI: 10.1038/Ng0806-862 |
0.626 |
|
| 2006 |
Sopko R, Papp B, Oliver SG, Andrews BJ. Phenotypic activation to discover biological pathways and kinase substrates. Cell Cycle (Georgetown, Tex.). 5: 1397-402. PMID 16855397 |
0.44 |
|
| 2006 |
Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, et al. Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. Journal of Biology. 5: 11. PMID 16762047 DOI: 10.1186/Jbiol36 |
0.773 |
|
| 2006 |
Baetz K, Measday V, Andrews B. Revealing hidden relationships among yeast genes involved in chromosome segregation using systematic synthetic lethal and synthetic dosage lethal screens. Cell Cycle (Georgetown, Tex.). 5: 592-5. PMID 16582600 DOI: 10.4161/Cc.5.6.2583 |
0.514 |
|
| 2006 |
Sopko R, Andrews B. Small open reading frames: not so small anymore. Genome Research. 16: 314-5. PMID 16510897 DOI: 10.1101/Gr.4976706 |
0.356 |
|
| 2006 |
Sopko R, Huang D, Preston N, Chua G, Papp B, Kafadar K, Snyder M, Oliver SG, Cyert M, Hughes TR, Boone C, Andrews B. Mapping pathways and phenotypes by systematic gene overexpression. Molecular Cell. 21: 319-30. PMID 16455487 DOI: 10.1016/J.Molcel.2005.12.011 |
0.676 |
|
| 2006 |
Friesen H, Humphries C, Ho Y, Schub O, Colwill K, Andrews B. Characterization of the yeast amphiphysins Rvs161p and Rvs167p reveals roles for the Rvs heterodimer in vivo. Molecular Biology of the Cell. 17: 1306-21. PMID 16394103 DOI: 10.1091/Mbc.E05-06-0476 |
0.806 |
|
| 2005 |
Ptacek J, Devgan G, Michaud G, Zhu H, Zhu X, Fasolo J, Guo H, Jona G, Breitkreutz A, Sopko R, McCartney RR, Schmidt MC, Rachidi N, Lee SJ, Mah AS, ... Andrews B, et al. Global analysis of protein phosphorylation in yeast. Nature. 438: 679-84. PMID 16319894 DOI: 10.1038/Nature04187 |
0.581 |
|
| 2005 |
Schuldiner M, Collins SR, Thompson NJ, Denic V, Bhamidipati A, Punna T, Ihmels J, Andrews B, Boone C, Greenblatt JF, Weissman JS, Krogan NJ. Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Cell. 123: 507-19. PMID 16269340 DOI: 10.1016/J.Cell.2005.08.031 |
0.635 |
|
| 2005 |
Measday V, Baetz K, Guzzo J, Yuen K, Kwok T, Sheikh B, Ding H, Ueta R, Hoac T, Cheng B, Pot I, Tong A, Yamaguchi-Iwai Y, Boone C, Hieter P, Andrews B, et al. Systematic yeast synthetic lethal and synthetic dosage lethal screens identify genes required for chromosome segregation. Proceedings of the National Academy of Sciences of the United States of America. 102: 13956-61. PMID 16172405 DOI: 10.1073/Pnas.0503504102 |
0.636 |
|
| 2005 |
Davierwala AP, Haynes J, Li Z, Brost RL, Robinson MD, Yu L, Mnaimneh S, Ding H, Zhu H, Chen Y, Cheng X, Brown GW, Boone C, Andrews BJ, Hughes TR. The synthetic genetic interaction spectrum of essential genes. Nature Genetics. 37: 1147-52. PMID 16155567 DOI: 10.1038/Ng1640 |
0.668 |
|
| 2005 |
Zhang LV, King OD, Wong SL, Goldberg DS, Tong AH, Lesage G, Andrews B, Bussey H, Boone C, Roth FP. Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network. Journal of Biology. 4: 6. PMID 15982408 DOI: 10.1186/Jbiol23 |
0.602 |
|
| 2005 |
Menon BB, Sarma NJ, Pasula S, Deminoff SJ, Willis KA, Barbara KE, Andrews B, Santangelo GM. Reverse recruitment: the Nup84 nuclear pore subcomplex mediates Rap1/Gcr1/Gcr2 transcriptional activation. Proceedings of the National Academy of Sciences of the United States of America. 102: 5749-54. PMID 15817685 DOI: 10.1073/Pnas.0501768102 |
0.372 |
|
| 2005 |
Friesen H, Colwill K, Robertson K, Schub O, Andrews B. Interaction of the Saccharomyces cerevisiae cortical actin patch protein Rvs167p with proteins involved in ER to Golgi vesicle trafficking. Genetics. 170: 555-68. PMID 15802519 DOI: 10.1534/Genetics.104.040063 |
0.362 |
|
| 2004 |
Wong SL, Zhang LV, Tong AH, Li Z, Goldberg DS, King OD, Lesage G, Vidal M, Andrews B, Bussey H, Boone C, Roth FP. Combining biological networks to predict genetic interactions. Proceedings of the National Academy of Sciences of the United States of America. 101: 15682-7. PMID 15496468 DOI: 10.1073/Pnas.0406614101 |
0.675 |
|
| 2004 |
Mnaimneh S, Davierwala AP, Haynes J, Moffat J, Peng WT, Zhang W, Yang X, Pootoolal J, Chua G, Lopez A, Trochesset M, Morse D, Krogan NJ, Hiley SL, Li Z, ... ... Andrews BJ, et al. Exploration of essential gene functions via titratable promoter alleles. Cell. 118: 31-44. PMID 15242642 DOI: 10.1016/J.Cell.2004.06.013 |
0.734 |
|
| 2004 |
Costanzo M, Nishikawa JL, Tang X, Millman JS, Schub O, Breitkreuz K, Dewar D, Rupes I, Andrews B, Tyers M. CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast. Cell. 117: 899-913. PMID 15210111 DOI: 10.1016/J.Cell.2004.05.024 |
0.712 |
|
| 2004 |
Tong AH, Lesage G, Bader GD, Ding H, Xu H, Xin X, Young J, Berriz GF, Brost RL, Chang M, Chen Y, Cheng X, Chua G, Friesen H, Goldberg DS, ... Andrews B, et al. Global mapping of the yeast genetic interaction network. Science (New York, N.Y.). 303: 808-13. PMID 14764870 DOI: 10.1126/Science.1091317 |
0.823 |
|
| 2004 |
Hughes T, Andrews B, Boone C. Old Drugs, New Tricks: Using Genetically Sensitized Yeast to Reveal Drug Targets Cell. 116: 5-7. PMID 14718160 DOI: 10.1016/S0092-8674(03)01070-5 |
0.561 |
|
| 2004 |
Moffat J, Andrews B. Late-G1 cyclin-CDK activity is essential for control of cell morphogenesis in budding yeast. Nature Cell Biology. 6: 59-66. PMID 14688790 DOI: 10.1038/Ncb1078 |
0.613 |
|
| 2003 |
Jorgensen P, Breitkreutz BJ, Breitkreutz K, Stark C, Liu G, Cook M, Sharom J, Nishikawa JL, Ketela T, Bellows D, Breitkreutz A, Rupes I, Boucher L, Dewar D, Vo M, ... Andrews B, et al. Harvesting the genome's bounty: integrative genomics. Cold Spring Harbor Symposia On Quantitative Biology. 68: 431-43. PMID 15338646 DOI: 10.1101/Sqb.2003.68.431 |
0.518 |
|
| 2003 |
Willis KA, Barbara KE, Menon BB, Moffat J, Andrews B, Santangelo GM. The global transcriptional activator of Saccharomyces cerevisiae, Gcr1p, mediates the response to glucose by stimulating protein synthesis and CLN-dependent cell cycle progression. Genetics. 165: 1017-29. PMID 14668361 |
0.558 |
|
| 2003 |
Andrews BJ, Bader GD, Boone C. Playing tag with the yeast proteome. Nature Biotechnology. 21: 1297-9. PMID 14595360 DOI: 10.1038/Nbt1103-1297 |
0.518 |
|
| 2003 |
Moffat J, Andrews B. Ac'septin' a signal: kinase regulation by septins. Developmental Cell. 5: 528-30. PMID 14536051 DOI: 10.1016/S1534-5807(03)00301-0 |
0.571 |
|
| 2003 |
Friesen H, Murphy K, Breitkreutz A, Tyers M, Andrews B. Regulation of the yeast amphiphysin homologue Rvs167p by phosphorylation. Molecular Biology of the Cell. 14: 3027-40. PMID 12857883 DOI: 10.1091/Mbc.E02-09-0613 |
0.603 |
|
| 2003 |
Bader GD, Heilbut A, Andrews B, Tyers M, Hughes T, Boone C. Functional genomics and proteomics: charting a multidimensional map of the yeast cell. Trends in Cell Biology. 13: 344-56. PMID 12837605 DOI: 10.1016/S0962-8924(03)00127-2 |
0.713 |
|
| 2003 |
Costanzo M, Schub O, Andrews B. G1 Transcription Factors Are Differentially Regulated in Saccharomyces cerevisiae by the Swi6-Binding Protein Stb1 Molecular and Cellular Biology. 23: 5064-5077. PMID 12832490 DOI: 10.1128/Mcb.23.14.5064-5077.2003 |
0.713 |
|
| 2003 |
Boone C, Andrews B. ORFeomics: Correcting the wiggle in worm genes Nature Genetics. 34: 8-9. PMID 12721544 DOI: 10.1038/Ng0503-8 |
0.619 |
|
| 2002 |
Humphries CL, Balcer HI, D'Agostino JL, Winsor B, Drubin DG, Barnes G, Andrews BJ, Goode BL. Direct regulation of Arp2/3 complex activity and function by the actin binding protein coronin. The Journal of Cell Biology. 159: 993-1004. PMID 12499356 DOI: 10.1083/Jcb.200206113 |
0.796 |
|
| 2002 |
Jorgensen P, Nelson B, Robinson MD, Chen Y, Andrews B, Tyers M, Boone C. High-resolution genetic mapping with ordered arrays of Saccharomyces cerevisiae deletion mutants. Genetics. 162: 1091-9. PMID 12454058 |
0.596 |
|
| 2002 |
Huang D, Moffat J, Andrews B. Dissection of a complex phenotype by functional genomics reveals roles for the yeast cyclin-dependent protein kinase Pho85 in stress adaptation and cell integrity. Molecular and Cellular Biology. 22: 5076-88. PMID 12077337 DOI: 10.1128/Mcb.22.14.5076-5088.2002 |
0.674 |
|
| 2001 |
Tong AH, Evangelista M, Parsons AB, Xu H, Bader GD, Pagé N, Robinson M, Raghibizadeh S, Hogue CW, Bussey H, Andrews B, Tyers M, Boone C. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science (New York, N.Y.). 294: 2364-8. PMID 11743205 DOI: 10.1126/Science.1065810 |
0.759 |
|
| 2001 |
McBride HJ, Sil A, Measday V, Yu Y, Moffat J, Maxon ME, Herskowitz I, Andrews B, Stillman DJ. The protein kinase Pho85 is required for asymmetric accumulation of the Ash1 protein in Saccharomyces cerevisiae. Molecular Microbiology. 42: 345-53. PMID 11703659 DOI: 10.1046/J.1365-2958.2001.02601.X |
0.761 |
|
| 2001 |
Baetz K, Moffat J, Haynes J, Chang M, Andrews B. Transcriptional coregulation by the cell integrity mitogen-activated protein kinase Slt2 and the cell cycle regulator Swi4. Molecular and Cellular Biology. 21: 6515-28. PMID 11533240 DOI: 10.1128/Mcb.21.19.6515-6528.2001 |
0.656 |
|
| 2000 |
Moffat J, Huang D, Andrews B. Functions of Pho85 cyclin-dependent kinases in budding yeast. Progress in Cell Cycle Research. 4: 97-106. PMID 10740818 DOI: 10.1007/978-1-4615-4253-7_9 |
0.632 |
|
| 2000 |
Measday V, McBride H, Moffat J, Stillman D, Andrews B. Interactions between Pho85 cyclin-dependent kinase complexes and the Swi5 transcription factor in budding yeast. Molecular Microbiology. 35: 825-34. PMID 10692159 DOI: 10.1046/J.1365-2958.2000.01754.X |
0.675 |
|
| 1999 |
Huang D, Patrick G, Moffat J, Tsai LH, Andrews B. Mammalian Cdk5 is a functional homologue of the budding yeast Pho85 cyclin-dependent protein kinase. Proceedings of the National Academy of Sciences of the United States of America. 96: 14445-50. PMID 10588725 DOI: 10.1073/Pnas.96.25.14445 |
0.606 |
|
| 1999 |
Baetz K, Andrews B. Regulation of cell cycle transcription factor Swi4 through auto- inhibition of DNA binding Molecular and Cellular Biology. 19: 6729-6741. PMID 10490612 DOI: 10.1128/Mcb.19.10.6729 |
0.323 |
|
| 1999 |
Ho Y, Costanzo M, Moore L, Kobayashi R, Andrews BJ. Regulation of transcription at the Saccharomyces cerevisiae start transition by Stb1, a Swi6-binding protein. Molecular and Cellular Biology. 19: 5267-78. PMID 10409718 DOI: 10.1128/Mcb.19.8.5267 |
0.647 |
|
| 1998 |
Lee J, Colwill K, Aneliunas V, Tennyson C, Moore L, Ho Y, Andrews B. Interaction of yeast Rvs167 and Pho85 cyclin-dependent kinase complexes may link the cell cycle to the actin cytoskeleton Current Biology. 8: 1310-1321. PMID 9843683 DOI: 10.1016/S0960-9822(07)00561-1 |
0.448 |
|
| 1998 |
Huang D, Moffat J, Wilson WA, Moore L, Cheng C, Roach PJ, Andrews B. Cyclin partners determine Pho85 protein kinase substrate specificity in vitro and in vivo: control of glycogen biosynthesis by Pcl8 and Pcl10. Molecular and Cellular Biology. 18: 3289-99. PMID 9584169 DOI: 10.1128/Mcb.18.6.3289 |
0.618 |
|
| 1998 |
Andrews B, Measday V. The cyclin family of budding yeast: abundant use of a good idea. Trends in Genetics : Tig. 14: 66-72. PMID 9520600 DOI: 10.1016/S0168-9525(97)01322-X |
0.448 |
|
| 1997 |
Archambault J, Chambers RS, Kobor MS, Ho Y, Cartier M, Bolotin D, Andrews B, Kane CM, Greenblatt J. An essential component of a C-terminal domain phosphatase that interacts with transcription factor IIF in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 94: 14300-5. PMID 9405607 DOI: 10.1073/Pnas.94.26.14300 |
0.35 |
|
| 1997 |
Madden K, Sheu YJ, Baetz K, Andrews B, Snyder M. SBF cell cycle regulator as a target of the yeast PKC-MAP kinase pathway. Science (New York, N.Y.). 275: 1781-4. PMID 9065400 DOI: 10.1126/Science.275.5307.1781 |
0.437 |
|
| 1997 |
Measday V, Moore L, Retnakaran R, Lee J, Donoviel M, Neiman AM, Andrews B. A family of cyclin-like proteins that interact with the Pho85 cyclin- dependent kinase Molecular and Cellular Biology. 17: 1212-1223. PMID 9032248 DOI: 10.1128/Mcb.17.3.1212 |
0.506 |
|
| 1997 |
Ho Y, Mason S, Kobayashi R, Hoekstra M, Andrews B. Role of the casein kinase I isoform, Hrr25, and the cell cycle- regulatory transcription factor, SBF, in the transcriptional response to DNA damage in Saccharomyces cerevisiae Proceedings of the National Academy of Sciences of the United States of America. 94: 581-586. PMID 9012827 DOI: 10.1073/Pnas.94.2.581 |
0.396 |
|
| 1996 |
Colwill K, Pawson T, Andrews B, Prasad J, Manley JL, Bell JC, Duncan PI. The Clk/Sty protein kinase phosphorylates SR splicing factors and regulates their intranuclear distribution. The Embo Journal. 15: 265-75. PMID 8617202 DOI: 10.1002/J.1460-2075.1996.Tb00357.X |
0.346 |
|
| 1994 |
Measday V, Moore L, Ogas J, Tyers M, Andrews B. The PCL2 (ORFD)-PHOSS cyclin-dependent kinase complex: A cell cycle regulator in yeast Science. 266: 1391-1395. PMID 7973731 DOI: 10.1126/Science.7973731 |
0.612 |
|
| 1993 |
Andrews BJ, Moore L. Mutational analysis of a DNA sequence involved in linking gene expression to the cell cycle. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 70: 1073-80. PMID 1297332 DOI: 10.1139/o92-152 |
0.356 |
|
| 1992 |
Andrews BJ, Moore LA. Interaction of the yeast Swi4 and Swi6 cell cycle regulatory proteins in vitro. Proceedings of the National Academy of Sciences of the United States of America. 89: 11852-6. PMID 1465410 DOI: 10.1073/pnas.89.24.11852 |
0.302 |
|
| 1992 |
Herskowitz I, Andrews B, Kruger W, Ogas J, Sil A, Coburn C, Peterson C. 36 Integration of Multiple Regulatory Inputs in the Control of HO Expression in Yeast Cold Spring Harbor Monograph Archive. 949-974. DOI: 10.1101/087969425.22B.949 |
0.823 |
|
| 1991 |
Herskowitz I, Ogas J, Andrews BJ, Chang F. Regulators of synthesis and activity of the G1 cyclins of budding yeast. Cold Spring Harbor Symposia On Quantitative Biology. 56: 33-40. PMID 1840254 DOI: 10.1101/Sqb.1991.056.01.006 |
0.518 |
|
| 1991 |
Ogas J, Andrews BJ, Herskowitz I. Transcriptional activation of CLN1, CLN2, and a putative new G1 cyclin (HCS26) by SWI4, a positive regulator of G1-specific transcription. Cell. 66: 1015-26. PMID 1832336 DOI: 10.1016/0092-8674(91)90445-5 |
0.564 |
|
| 1990 |
Andrews BJ, Herskowitz I. Regulation of cell cycle-dependent gene expression in yeast. The Journal of Biological Chemistry. 265: 14057-60. PMID 2201678 |
0.592 |
|
| 1989 |
Andrews BJ, Herskowitz I. The yeast SWI4 protein contains a motif present in developmental regulators and is part of a complex involved in cell-cycle-dependent transcription. Nature. 342: 830-3. PMID 2689885 DOI: 10.1038/342830A0 |
0.623 |
|
| 1989 |
Andrews BJ, Herskowitz I. Identification of a DNA binding factor involved in cell-cycle control of the yeast HO gene. Cell. 57: 21-9. PMID 2649246 DOI: 10.1016/0092-8674(89)90168-2 |
0.605 |
|
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