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Robert A Martienssen - Publications

Affiliations: 
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
Area:
Heterochromatin Reprogramming, Small Interfering RNA, Germ Cell Fate
Website:
http://www.cshl.edu/Faculty/Rob-Martienssen.html

235 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Stevenson DW, Ramakrishnan S, Alves CS, Coelho LA, Kramer M, Goodwin S, Ramos OM, Eshel G, Sondervan VM, Frangos S, Zumajo-Cardona C, Jenike K, Ou S, Wang X, Lee YP, ... ... Martienssen RA, et al. The genome of the Wollemi pine, a critically endangered "living fossil" unchanged since the Cretaceous, reveals extensive ancient transposon activity. Biorxiv : the Preprint Server For Biology. PMID 37662366 DOI: 10.1101/2023.08.24.554647  0.35
2023 Lee SC, Adams DW, Ipsaro JJ, Cahn J, Lynn J, Kim HS, Berube B, Major V, Calarco JP, LeBlanc C, Bhattacharjee S, Ramu U, Grimanelli D, Jacob Y, Voigt P, ... ... Martienssen RA, et al. Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation. Cell. PMID 37643610 DOI: 10.1016/j.cell.2023.08.001  0.588
2023 Shimada A, Cahn J, Ernst E, Lynn J, Grimanelli D, Henderson I, Kakutani T, Martienssen RA. Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs. Biorxiv : the Preprint Server For Biology. PMID 37577592 DOI: 10.1101/2023.08.02.551486  0.527
2023 Berube B, Ernst E, Cahn J, Roche B, de Santis Alves C, Lynn J, Scheben A, Siepel A, Ross-Ibarra J, Kermicle J, Martienssen R. guides maize domestication and evolution by RNAi. Biorxiv : the Preprint Server For Biology. PMID 37503269 DOI: 10.1101/2023.07.12.548689  0.328
2023 Lee SC, Adams DW, Ipsaro JJ, Cahn J, Lynn J, Kim HS, Berube B, Major V, Calarco JP, LeBlanc C, Bhattacharjee S, Ramu U, Grimanelli D, Jacob Y, Voigt P, ... ... Martienssen RA, et al. Chromatin remodeling of histone H3 variants underlies epigenetic inheritance of DNA methylation. Biorxiv : the Preprint Server For Biology. PMID 37503143 DOI: 10.1101/2023.07.11.548598  0.604
2023 Herridge RP, Dolata J, Migliori V, de Santis Alves C, Borges F, Ex FV, Lin A, Bajczyk M, Leonardi T, Hendrick A, Schorn AJ, Kouzarides T, Martienssen RA. Pseudouridine guides germline small RNA transport and epigenetic inheritance. Biorxiv : the Preprint Server For Biology. PMID 37398006 DOI: 10.1101/2023.05.27.542553  0.314
2021 Naish M, Alonge M, Wlodzimierz P, Tock AJ, Abramson BW, Schmücker A, Mandáková T, Jamge B, Lambing C, Kuo P, Yelina N, Hartwick N, Colt K, Smith LM, Ton J, ... ... Martienssen RA, et al. The genetic and epigenetic landscape of the centromeres. Science (New York, N.Y.). 374: eabi7489. PMID 34762468 DOI: 10.1126/science.abi7489  0.609
2021 Lee SC, Martienssen RA. Regulation of retrotransposition in Arabidopsis. Biochemical Society Transactions. PMID 34495315 DOI: 10.1042/BST20210337  0.398
2021 Parent JS, Cahn J, Herridge RP, Grimanelli D, Martienssen RA. Small RNAs guide histone methylation in embryos. Genes & Development. 35: 841-846. PMID 34016690 DOI: 10.1101/gad.343871.120  0.349
2021 Khouider S, Borges F, LeBlanc C, Ungru A, Schnittger A, Martienssen R, Colot V, Bouyer D. Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function. Nature Communications. 12: 410. PMID 33462227 DOI: 10.1038/s41467-020-20606-1  0.347
2020 Michael TP, Ernst E, Hartwick N, Chu P, Bryant D, Gilbert S, Ortleb S, Baggs EL, Sree KS, Appenroth KJ, Fuchs J, Jupe F, Sandoval JP, Krasileva KV, Borisjuk L, ... ... Martienssen RA, et al. Genome and time-of-day transcriptome of link morphological minimization with gene loss and less growth control. Genome Research. PMID 33361111 DOI: 10.1101/gr.266429.120  0.37
2020 Borges F, Donoghue MTA, LeBlanc C, Wear EE, Tanurdžić M, Berube B, Brooks A, Thompson WF, Hanley-Bowdoin L, Martienssen RA. Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. Current Biology : Cb. PMID 33275892 DOI: 10.1016/j.cub.2020.10.098  0.38
2020 Parent JS, Borges F, Shimada A, Martienssen RA. Small RNA Function in Plants: From Chromatin to the Next Generation. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32518093 DOI: 10.1101/Sqb.2019.84.040394  0.471
2020 Borg M, Jacob Y, Susaki D, LeBlanc C, Buendía D, Axelsson E, Kawashima T, Voigt P, Boavida L, Becker J, Higashiyama T, Martienssen R, Berger F. Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin. Nature Cell Biology. PMID 32393884 DOI: 10.1038/S41556-020-0515-Y  0.687
2020 Lee SC, Ernst E, Berube B, Borges F, Parent JS, Ledon P, Schorn A, Martienssen RA. retrotransposon virus-like particles and their regulation by epigenetically activated small RNA. Genome Research. PMID 32303559 DOI: 10.1101/Gr.259044.119  0.458
2020 Wheeler E, Brooks AM, Concia L, Vera D, Wear EE, LeBlanc C, Ramu U, Vaughn MW, Bass H, Martienssen R, Thompson WF, Hanley-Bowdoin L. Arabidopsis DNA replication initiates in intergenic, AT-rich open chromatin. Plant Physiology. PMID 32205451 DOI: 10.1104/Pp.19.01520  0.432
2020 Gutbrod MJ, Martienssen RA. Conserved chromosomal functions of RNA interference. Nature Reviews. Genetics. PMID 32051563 DOI: 10.1038/S41576-019-0203-6  0.417
2020 Wang Z, Butel N, Santos-González J, Borges F, Yi J, Martienssen R, Martinez G, Köhler C. Polymerase IV Plays a Crucial Role in Pollen Development in Capsella. The Plant Cell. PMID 31988265 DOI: 10.1105/Tpc.19.00938  0.451
2019 Bhattacharjee S, Roche B, Martienssen RA. RNA-induced initiation of transcriptional silencing (RITS) complex structure and function. Rna Biology. 1-14. PMID 31213126 DOI: 10.1080/15476286.2019.1621624  0.381
2018 Ikeda Y, Nishihama R, Yamaoka S, Arteaga-Vazquez MA, Aguilar-Cruz A, Grimanelli D, Pogorelcnik R, Martienssen RA, Yamato KT, Kohchi T, Hirayama T, Mathieu O. Loss of CG methylation in Marchantia polymorpha causes disorganization of cell division and reveals unique DNA methylation regulatory mechanisms of non-CG methylation. Plant & Cell Physiology. PMID 30102384 DOI: 10.1093/Pcp/Pcy161  0.437
2018 Schorn AJ, Martienssen R. Tie-Break: Host and Retrotransposons Play tRNA. Trends in Cell Biology. 28: 793-806. PMID 29934075 DOI: 10.1016/J.Tcb.2018.05.006  0.395
2018 Choi K, Zhao X, Tock AJ, Lambing C, Underwood CJ, Hardcastle TJ, Serra H, Kim J, Cho HS, Kim J, Ziolkowski PA, Yelina NE, Hwang I, Martienssen RA, Henderson IR. Nucleosomes and DNA methylation shape meiotic DSB frequency intransposons and gene regulatory regions. Genome Research. PMID 29530928 DOI: 10.1101/Gr.225599.117  0.783
2018 Underwood CJ, Choi K, Lambing C, Zhao X, Serra H, Borges F, Simorowski J, Ernst E, Jacob Y, Henderson IR, Martienssen RA. Epigenetic activation of meiotic recombination nearcentromeres via loss of H3K9me2 and non-CG DNA methylation. Genome Research. PMID 29530927 DOI: 10.1101/Gr.227116.117  0.811
2018 Borges F, Parent JS, van Ex F, Wolff P, Martínez G, Köhler C, Martienssen RA. Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis. Nature Genetics. PMID 29335544 DOI: 10.1038/S41588-017-0032-5  0.402
2018 Concia L, Brooks AM, Wheeler E, Zynda G, Wear EE, LeBlanc C, Song J, Lee TJ, Pascuzzi PE, Martienssen R, Vaughn MW, Thompson W, Hanley-Bowdoin L. Genome-Wide Analysis of the Arabidopsis thaliana Replication Timing Program. Plant Physiology. PMID 29301956 DOI: 10.1104/Pp.17.01537  0.405
2017 He H, Li Y, Dong Q, Chang AY, Gao F, Chi Z, Su M, Zhang F, Ban H, Martienssen R, Chen YH, Li F. Coordinated regulation of heterochromatin inheritance by Dpb3-Dpb4 complex. Proceedings of the National Academy of Sciences of the United States of America. PMID 29109278 DOI: 10.1073/Pnas.1712961114  0.398
2017 Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, ... Martienssen RA, et al. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell. 171: 287-304.e15. PMID 28985561 DOI: 10.1016/J.Cell.2017.09.030  0.785
2017 Roche B, Arcangioli B, Martienssen R. New roles for Dicer in the nucleolus and its relevance to cancer. Cell Cycle (Georgetown, Tex.). 16: 1643-1653. PMID 28846478 DOI: 10.1080/15384101.2017.1361568  0.343
2017 Wear EE, Song J, Zynda G, LeBlanc C, Lee TJ, Mickelson-Young L, Concia L, Mulvaney P, Szymanski ES, Allen GC, Martienssen R, Vaughn MW, Hanley-Bowdoin L, Thompson W. Genomic analysis of the DNA replication timing program during mitotic S phase in maize (Zea mays L.) root tips. The Plant Cell. PMID 28842533 DOI: 10.1105/Tpc.17.00037  0.417
2017 Schorn AJ, Gutbrod MJ, LeBlanc C, Martienssen R. LTR-Retrotransposon Control by tRNA-Derived Small RNAs. Cell. 170: 61-71.e11. PMID 28666125 DOI: 10.1016/J.Cell.2017.06.013  0.388
2017 Chang AY, Castel SE, Ernst E, Kim HS, Martienssen RA. The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly. Cell Reports. 19: 2477-2489. PMID 28636937 DOI: 10.1016/J.Celrep.2017.05.086  0.404
2017 Roche B, Arcangioli B, Martienssen R. Transcriptional reprogramming in cellular quiescence. Rna Biology. 14: 843-853. PMID 28497998 DOI: 10.1080/15476286.2017.1327510  0.342
2017 Underwood CJ, Henderson IR, Martienssen RA. Genetic and epigenetic variation of transposable elements in Arabidopsis. Current Opinion in Plant Biology. 36: 135-141. PMID 28343122 DOI: 10.1016/J.Pbi.2017.03.002  0.747
2017 Ziolkowski PA, Underwood CJ, Lambing C, Martinez-Garcia M, Lawrence EJ, Ziolkowska L, Griffin C, Choi K, Franklin FC, Martienssen RA, Henderson IR. Natural variation and dosage of the HEI10 meiotic E3 ligase control Arabidopsis crossover recombination. Genes & Development. PMID 28223312 DOI: 10.1101/Gad.295501.116  0.73
2017 Ingouff M, Selles B, Michaud C, Vu TM, Berger F, Schorn AJ, Autran D, Van Durme M, Nowack MK, Martienssen RA, Grimanelli D. Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM. Genes & Development. PMID 28115468 DOI: 10.1101/Gad.289397.116  0.428
2016 Roche B, Arcangioli B, Martienssen RA. RNA interference is essential for cellular quiescence. Science (New York, N.Y.). 354. PMID 27738016 DOI: 10.1126/Science.Aah5651  0.381
2016 Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Hoda A, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, ... Martienssen R, et al. Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 27436134 DOI: 10.1111/Tpj.13262  0.333
2016 Quadrana L, Bortolini Silveira A, Mayhew GF, LeBlanc C, Martienssen RA, Jeddeloh JA, Colot V. The Arabidopsis thaliana mobilome and its impact at the species level. Elife. 5. PMID 27258693 DOI: 10.7554/Elife.15716  0.409
2016 Pichugina T, Sugawara T, Kaykov A, Schierding W, Masuda K, Uewaki J, Grand RS, Allison JR, Martienssen RA, Nurse P, Ueno M, O'Sullivan JM. A diffusion model for the coordination of DNA replication in Schizosaccharomyces pombe. Scientific Reports. 6: 18757. PMID 26729303 DOI: 10.1038/Srep18757  0.428
2015 Ren J, Castel SE, Martienssen RA. Dicer in action at replication-transcription collisions. Molecular & Cellular Oncology. 2: e991224. PMID 27308471 DOI: 10.4161/23723556.2014.991224  0.407
2015 Borges F, Martienssen RA. The expanding world of small RNAs in plants. Nature Reviews. Molecular Cell Biology. 16: 727-41. PMID 26530390 DOI: 10.1038/Nrm4085  0.417
2015 Ong-Abdullah M, Ordway JM, Jiang N, Ooi SE, Kok SY, Sarpan N, Azimi N, Hashim AT, Ishak Z, Rosli SK, Malike FA, Bakar NA, Marjuni M, Abdullah N, Yaakub Z, ... Martienssen RA, et al. Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm. Nature. 525: 533-7. PMID 26352475 DOI: 10.1038/Nature15365  0.379
2015 Martienssen R, Moazed D. RNAi and Heterochromatin Assembly. Cold Spring Harbor Perspectives in Biology. 7. PMID 26238358 DOI: 10.1101/Cshperspect.A019323  0.38
2015 Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM. The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology. 16: 79. PMID 25928034 DOI: 10.1186/S13059-015-0640-2  0.447
2015 Underwood CJ, Martienssen RA. Argonautes team up to silence transposable elements in Arabidopsis. The Embo Journal. 34: 579-80. PMID 25630704 DOI: 10.15252/Embj.201590971  0.699
2015 Cantó-Pastor A, Mollá-Morales A, Ernst E, Dahl W, Zhai J, Yan Y, Meyers BC, Shanklin J, Martienssen R. Efficient transformation and artificial miRNA gene silencing in Lemna minor. Plant Biology (Stuttgart, Germany). 17: 59-65. PMID 24989135 DOI: 10.1111/Plb.12215  0.315
2014 Castel SE, Ren J, Bhattacharjee S, Chang AY, Sánchez M, Valbuena A, Antequera F, Martienssen RA. Dicer promotes transcription termination at sites of replication stress to maintain genome stability. Cell. 159: 572-83. PMID 25417108 DOI: 10.1016/J.Cell.2014.09.031  0.453
2014 Grand RS, Pichugina T, Gehlen LR, Jones MB, Tsai P, Allison JR, Martienssen R, O'Sullivan JM. Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure. Nucleic Acids Research. 42: 12585-99. PMID 25342201 DOI: 10.1093/Nar/Gku965  0.397
2014 Thiebaut F, Rojas CA, Grativol C, Motta MR, Vieira T, Regulski M, Martienssen RA, Farinelli L, Hemerly AS, Ferreira PC. Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize. Bmc Genomics. 15: 766. PMID 25194793 DOI: 10.1186/1471-2164-15-766  0.368
2014 Singh R, Low ET, Ooi LC, Ong-Abdullah M, Nookiah R, Ting NC, Marjuni M, Chan PL, Ithnin M, Manaf MA, Nagappan J, Chan KL, Rosli R, Halim MA, Azizi N, ... Martienssen RA, et al. The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB. Nature Communications. 5: 4106. PMID 24978855 DOI: 10.1038/Ncomms5106  0.326
2014 Grand RS, Martienssen R, O'Sullivan JM. Potential roles for interactions between the mitochondrial and nuclear DNA throughout the cell cycle of Schizosaccharomyces pombe. Mitochondrion. 17: 141-9. PMID 24815909 DOI: 10.1016/J.Mito.2014.04.014  0.36
2014 Grativol C, Regulski M, Bertalan M, McCombie WR, da Silva FR, Zerlotini Neto A, Vicentini R, Farinelli L, Hemerly AS, Martienssen RA, Ferreira PC. Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum. The Plant Journal : For Cell and Molecular Biology. 79: 162-72. PMID 24773339 DOI: 10.1111/Tpj.12539  0.435
2014 Thiebaut F, Grativol C, Tanurdzic M, Carnavale-Bottino M, Vieira T, Motta MR, Rojas C, Vincentini R, Chabregas SM, Hemerly AS, Martienssen RA, Ferreira PC. Differential sRNA regulation in leaves and roots of sugarcane under water depletion. Plos One. 9: e93822. PMID 24695493 DOI: 10.1371/Journal.Pone.0093822  0.335
2014 Heard E, Martienssen RA. Transgenerational epigenetic inheritance: myths and mechanisms. Cell. 157: 95-109. PMID 24679529 DOI: 10.1016/J.Cell.2014.02.045  0.442
2014 Creasey KM, Zhai J, Borges F, Van Ex F, Regulski M, Meyers BC, Martienssen RA. miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature. 508: 411-5. PMID 24670663 DOI: 10.1038/Nature13069  0.443
2014 Jacob Y, Bergamin E, Donoghue MT, Mongeon V, LeBlanc C, Voigt P, Underwood CJ, Brunzelle JS, Michaels SD, Reinberg D, Couture JF, Martienssen RA. Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication. Science (New York, N.Y.). 343: 1249-53. PMID 24626927 DOI: 10.1126/Science.1248357  0.786
2014 Kuscu C, Zaratiegui M, Kim HS, Wah DA, Martienssen RA, Schalch T, Joshua-Tor L. CRL4-like Clr4 complex in Schizosaccharomyces pombe depends on an exposed surface of Dos1 for heterochromatin silencing. Proceedings of the National Academy of Sciences of the United States of America. 111: 1795-800. PMID 24449894 DOI: 10.1073/Pnas.1313096111  0.355
2013 Singh R, Low ET, Ooi LC, Ong-Abdullah M, Ting NC, Nagappan J, Nookiah R, Amiruddin MD, Rosli R, Manaf MA, Chan KL, Halim MA, Azizi N, Lakey N, Smith SW, ... Martienssen RA, et al. The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK. Nature. 500: 340-4. PMID 23883930 DOI: 10.1038/Nature12356  0.309
2013 Borges F, Martienssen RA. Establishing epigenetic variation during genome reprogramming. Rna Biology. 10: 490-4. PMID 23774895 DOI: 10.4161/Rna.24085  0.477
2013 Vu TM, Nakamura M, Calarco JP, Susaki D, Lim PQ, Kinoshita T, Higashiyama T, Martienssen RA, Berger F. RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis. Development (Cambridge, England). 140: 2953-60. PMID 23760956 DOI: 10.1242/Dev.092981  0.46
2013 Regulski M, Lu Z, Kendall J, Donoghue MT, Reinders J, Llaca V, Deschamps S, Smith A, Levy D, McCombie WR, Tingey S, Rafalski A, Hicks J, Ware D, Martienssen RA. The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Research. 23: 1651-62. PMID 23739895 DOI: 10.1101/Gr.153510.112  0.406
2013 Castel SE, Martienssen RA. RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nature Reviews. Genetics. 14: 100-12. PMID 23329111 DOI: 10.1038/Nrg3355  0.405
2012 Borges F, Calarco JP, Martienssen RA. Reprogramming the epigenome in Arabidopsis pollen. Cold Spring Harbor Symposia On Quantitative Biology. 77: 1-5. PMID 23619015 DOI: 10.1101/Sqb.2013.77.014969  0.511
2012 Holmes A, Roseaulin L, Schurra C, Waxin H, Lambert S, Zaratiegui M, Martienssen RA, Arcangioli B. Lsd1 and lsd2 control programmed replication fork pauses and imprinting in fission yeast. Cell Reports. 2: 1513-20. PMID 23260662 DOI: 10.1016/J.Celrep.2012.10.011  0.368
2012 Paszkowski J, Martienssen RA. Cell signaling and gene regulation. Current Opinion in Plant Biology. 15: 493-5. PMID 23141671 DOI: 10.1016/J.Pbi.2012.10.002  0.433
2012 Calarco JP, Martienssen RA. Imprinting: DNA methyltransferases illuminate reprogramming. Current Biology : Cb. 22: R929-31. PMID 23137693 DOI: 10.1016/J.Cub.2012.09.030  0.372
2012 Borges F, Gardner R, Lopes T, Calarco JP, Boavida LC, Slotkin RK, Martienssen RA, Becker JD. FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei. Plant Methods. 8: 44. PMID 23075219 DOI: 10.1186/1746-4811-8-44  0.774
2012 Zaratiegui M, Martienssen RA. SnapShot: small RNA-mediated epigenetic modifications. Cell. 151: 456-456.e1. PMID 23063132 DOI: 10.1016/J.Cell.2012.10.001  0.343
2012 Calarco JP, Borges F, Donoghue MT, Van Ex F, Jullien PE, Lopes T, Gardner R, Berger F, Feijó JA, Becker JD, Martienssen RA. Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. Cell. 151: 194-205. PMID 23000270 DOI: 10.1016/J.Cell.2012.09.001  0.481
2012 Han J, Jackson D, Martienssen R. Pod corn is caused by rearrangement at the Tunicate1 locus. The Plant Cell. 24: 2733-2744. PMID 22829149 DOI: 10.1105/Tpc.112.100537  0.412
2012 Berger F, Cao X, Chandler V, Dennis L, Martienssen R, Meyers B, Pikaard C, Peacock J, Richards E, Wagner D, Weigel D, Colot V, Deal R, Dean C, Ecker J, et al. Reading the second code: Mapping epigenomes to understand plant growth, development, and adaptation to the environment Plant Cell. 24: 2257-2261. PMID 22751210 DOI: 10.1105/tpc.112.100636  0.643
2012 Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC. Computational identification and analysis of novel sugarcane microRNAs. Bmc Genomics. 13: 290. PMID 22747909 DOI: 10.1186/1471-2164-13-290  0.328
2012 Ren J, Martienssen RA. Silent decision: HP1 protein escorts heterochromatic RNAs to their destiny. The Embo Journal. 31: 3237-8. PMID 22705945 DOI: 10.1038/Emboj.2012.172  0.342
2012 Jacob Y, Martienssen R. Molecular biology. All packed up and ready to go. Science (New York, N.Y.). 336: 1391-2. PMID 22700909 DOI: 10.1126/Science.1224272  0.655
2012 Zaratiegui M, Martienssen R. The persistence of a silent memory. Nature Genetics. 44: 118-9. PMID 22281766 DOI: 10.1038/Ng.1088  0.332
2012 Stillman B, Grodzicker T, Martienssen R, Stewart D. The Biology of Plants Cold Spring Harbor Symposia On Quantitative Biology. DOI: 10.1101/Sqb.2012.77.Fm  0.389
2011 Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R. A functional phylogenomic view of the seed plants. Plos Genetics. 7: e1002411. PMID 22194700 DOI: 10.1371/Journal.Pgen.1002411  0.464
2011 Zaratiegui M, Castel SE, Irvine DV, Kloc A, Ren J, Li F, de Castro E, Marín L, Chang AY, Goto D, Cande WZ, Antequera F, Arcangioli B, Martienssen RA. RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II. Nature. 479: 135-8. PMID 22002604 DOI: 10.1038/Nature10501  0.403
2011 Van Ex F, Jacob Y, Martienssen RA. Multiple roles for small RNAs during plant reproduction. Current Opinion in Plant Biology. 14: 588-93. PMID 21807552 DOI: 10.1016/J.Pbi.2011.07.003  0.671
2011 Li F, Martienssen R, Cande WZ. Coordination of DNA replication and histone modification by the Rik1-Dos2 complex. Nature. 475: 244-8. PMID 21725325 DOI: 10.1038/Nature10161  0.438
2011 Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, Young SK, Furuya K, Guo Y, Pidoux A, Chen HM, ... ... Martienssen R, et al. Comparative functional genomics of the fission yeasts. Science (New York, N.Y.). 332: 930-6. PMID 21511999 DOI: 10.1126/Science.1203357  0.8
2011 Volpe T, Martienssen RA. RNA interference and heterochromatin assembly. Cold Spring Harbor Perspectives in Biology. 3: a003731. PMID 21441597 DOI: 10.1101/Cshperspect.A003731  0.472
2011 Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD. MicroRNA activity in the Arabidopsis male germline. Journal of Experimental Botany. 62: 1611-20. PMID 21357774 DOI: 10.1093/Jxb/Erq452  0.757
2011 Calarco JP, Martienssen RA. Genome reprogramming and small interfering RNA in the Arabidopsis germline. Current Opinion in Genetics & Development. 21: 134-9. PMID 21330131 DOI: 10.1016/J.Gde.2011.01.014  0.375
2011 Hansen KR, Hazan I, Shanker S, Watt S, Verhein-Hansen J, Bähler J, Martienssen RA, Partridge JF, Cohen A, Thon G. H3K9me-independent gene silencing in fission yeast heterochromatin by Clr5 and histone deacetylases. Plos Genetics. 7: e1001268. PMID 21253571 DOI: 10.1371/Journal.Pgen.1001268  0.463
2011 Jacob Y, Martienssen RA. Chromatin reprogramming: gender equality during Arabidopsis germline differentiation. Current Biology : Cb. 21: R20-2. PMID 21215930 DOI: 10.1016/J.Cub.2010.11.052  0.642
2011 Zaratiegui M, Vaughn MW, Irvine DV, Goto D, Watt S, Bähler J, Arcangioli B, Martienssen RA. CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR. Nature. 469: 112-5. PMID 21151105 DOI: 10.1038/Nature09608  0.351
2010 Creasey KM, Martienssen RA. Germline reprogramming of heterochromatin in plants. Cold Spring Harbor Symposia On Quantitative Biology. 75: 269-74. PMID 21502413 DOI: 10.1101/Sqb.2010.75.064  0.362
2010 Cibrián-Jaramillo A, De la Torre-Bárcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R. Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution. Genome Biology and Evolution. 2: 225-39. PMID 20624728 DOI: 10.1093/Gbe/Evq012  0.477
2010 Lee TJ, Pascuzzi PE, Settlage SB, Shultz RW, Tanurdzic M, Rabinowicz PD, Menges M, Zheng P, Main D, Murray JA, Sosinski B, Allen GC, Martienssen RA, Hanley-Bowdoin L, Vaughn MW, et al. Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. Plos Genetics. 6: e1000982. PMID 20548960 DOI: 10.1371/Journal.Pgen.1000982  0.439
2010 Martienssen R. Molecular biology. Small RNA makes its move. Science (New York, N.Y.). 328: 834-5. PMID 20466910 DOI: 10.1126/Science.1190510  0.381
2010 Martienssen RA. Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis. The New Phytologist. 186: 46-53. PMID 20409176 DOI: 10.1111/J.1469-8137.2010.03193.X  0.426
2010 Olmedo-Monfil V, Durán-Figueroa N, Arteaga-Vázquez M, Demesa-Arévalo E, Autran D, Grimanelli D, Slotkin RK, Martienssen RA, Vielle-Calzada JP. Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature. 464: 628-32. PMID 20208518 DOI: 10.1038/nature08828  0.775
2009 Cibrián-Jaramillo A, Martienssen RA. Darwin's "Abominable Mystery": the role of RNA interference in the evolution of flowering plants. Cold Spring Harbor Symposia On Quantitative Biology. 74: 267-73. PMID 20508061 DOI: 10.1101/Sqb.2009.74.051  0.449
2009 Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... Martienssen RA, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534  0.813
2009 Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, ... Martienssen RA, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/Journal.Pgen.1000728  0.737
2009 Schwab R, Maizel A, Ruiz-Ferrer V, Garcia D, Bayer M, Crespi M, Voinnet O, Martienssen RA. Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana. Plos One. 4: e5980. PMID 19543387 DOI: 10.1371/Journal.Pone.0005980  0.637
2009 Irvine DV, Goto DB, Vaughn MW, Nakaseko Y, McCombie WR, Yanagida M, Martienssen R. Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing. Genome Research. 19: 1077-83. PMID 19423874 DOI: 10.1101/Gr.089318.108  0.432
2009 Slotkin RK, Vaughn M, Borges F, Tanurdzić M, Becker JD, Feijó JA, Martienssen RA. Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell. 136: 461-72. PMID 19203581 DOI: 10.1016/j.cell.2008.12.038  0.805
2008 Martienssen RA, Kloc A, Slotkin RK, Tanurdzić M. Epigenetic inheritance and reprogramming in plants and fission yeast. Cold Spring Harbor Symposia On Quantitative Biology. 73: 265-71. PMID 19329575 DOI: 10.1101/Sqb.2008.73.062  0.821
2008 Finigan P, Martienssen RA. Nucleolar dominance and DNA methylation directed by small interfering RNA. Molecular Cell. 32: 753-4. PMID 19111654 DOI: 10.1016/J.Molcel.2008.12.006  0.375
2008 Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, et al. Criteria for annotation of plant MicroRNAs. The Plant Cell. 20: 3186-90. PMID 19074682 DOI: 10.1105/Tpc.108.064311  0.696
2008 Tanurdzic M, Vaughn MW, Jiang H, Lee TJ, Slotkin RK, Sosinski B, Thompson WF, Doerge RW, Martienssen RA. Epigenomic consequences of immortalized plant cell suspension culture. Plos Biology. 6: 2880-95. PMID 19071958 DOI: 10.1371/Journal.Pbio.0060302  0.8
2008 Li F, Huarte M, Zaratiegui M, Vaughn MW, Shi Y, Martienssen R, Cande WZ. Lid2 is required for coordinating H3K4 and H3K9 methylation of heterochromatin and euchromatin. Cell. 135: 272-83. PMID 18957202 DOI: 10.1016/J.Cell.2008.08.036  0.392
2008 Masuda HP, Cabral LM, De Veylder L, Tanurdzic M, de Almeida Engler J, Geelen D, Inzé D, Martienssen RA, Ferreira PC, Hemerly AS. ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription. The Embo Journal. 27: 2746-56. PMID 18818695 DOI: 10.1038/Emboj.2008.191  0.468
2008 Gruntman E, Qi Y, Slotkin RK, Roeder T, Martienssen RA, Sachidanandam R. Kismeth: analyzer of plant methylation states through bisulfite sequencing. Bmc Bioinformatics. 9: 371. PMID 18786255 DOI: 10.1186/1471-2105-9-371  0.79
2008 Kloc A, Martienssen R. RNAi, heterochromatin and the cell cycle. Trends in Genetics. 24: 511-517. PMID 18778867 DOI: 10.1016/J.Tig.2008.08.002  0.365
2008 Martienssen R. Great leap forward? Transposable elements, small interfering RNA and adaptive Lamarckian evolution. The New Phytologist. 179: 570-2. PMID 18715321 DOI: 10.1111/J.1469-8137.2008.02567.X  0.313
2008 Rosin FM, Watanabe N, Cacas JL, Kato N, Arroyo JM, Fang Y, May B, Vaughn M, Simorowski J, Ramu U, McCombie RW, Spector DL, Martienssen RA, Lam E. Genome-wide transposon tagging reveals location-dependent effects on transcription and chromatin organization in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 55: 514-25. PMID 18410481 DOI: 10.1111/J.1365-313X.2008.03517.X  0.495
2008 Kloc A, Zaratiegui M, Nora E, Martienssen R. RNA interference guides histone modification during the S phase of chromosomal replication. Current Biology : Cb. 18: 490-5. PMID 18394897 DOI: 10.1016/J.Cub.2008.03.016  0.464
2008 Weil C, Martienssen R. Epigenetic interactions between transposons and genes: lessons from plants Current Opinion in Genetics and Development. 18: 188-192. PMID 18339541 DOI: 10.1016/J.Gde.2008.01.015  0.45
2008 Pinon V, Etchells JP, Rossignol P, Collier SA, Arroyo JM, Martienssen RA, Byrne ME. Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins. Development (Cambridge, England). 135: 1315-24. PMID 18305008 DOI: 10.1242/Dev.016469  0.429
2007 Ordway JM, Budiman MA, Korshunova Y, Maloney RK, Bedell JA, Citek RW, Bacher B, Peterson S, Rohlfing T, Hall J, Brown R, Lakey N, Doerge RW, Martienssen RA, Leon J, et al. Identification of novel high-frequency DNA methylation changes in breast cancer. Plos One. 2: e1314. PMID 18091988 DOI: 10.1371/Journal.Pone.0001314  0.339
2007 Vaughn MW, Tanurdzić M, Lippman Z, Jiang H, Carrasquillo R, Rabinowicz PD, Dedhia N, McCombie WR, Agier N, Bulski A, Colot V, Doerge RW, Martienssen RA. Epigenetic natural variation in Arabidopsis thaliana. Plos Biology. 5: e174. PMID 17579518 DOI: 10.1371/Journal.Pbio.0050174  0.726
2007 Boccara M, Sarazin A, Billoud B, Jolly V, Martienssen R, Baulcombe D, Colot V. New approaches for the analysis of Arabidopsis thaliana small RNAs. Biochimie. 89: 1252-6. PMID 17562352 DOI: 10.1016/J.Biochi.2007.04.011  0.618
2007 Huarte M, Lan F, Kim T, Vaughn MW, Zaratiegui M, Martienssen RA, Buratowski S, Shi Y. The fission yeast Jmj2 reverses histone H3 Lysine 4 trimethylation. The Journal of Biological Chemistry. 282: 21662-70. PMID 17550896 DOI: 10.1074/Jbc.M703897200  0.405
2007 Turck F, Roudier F, Farrona S, Martin-Magniette ML, Guillaume E, Buisine N, Gagnot S, Martienssen RA, Coupland G, Colot V. Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. Plos Genetics. 3: e86. PMID 17542647 DOI: 10.1371/Journal.Pgen.0030086  0.474
2007 Lan F, Zaratiegui M, Villén J, Vaughn MW, Verdel A, Huarte M, Shi Y, Gygi SP, Moazed D, Martienssen RA, Shi Y. S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription. Molecular Cell. 26: 89-101. PMID 17434129 DOI: 10.1016/J.Molcel.2007.02.023  0.454
2007 Murakami H, Goto DB, Toda T, Chen ES, Grewal SI, Martienssen RA, Yanagida M. Ribonuclease activity of Dis3 is required for mitotic progression and provides a possible link between heterochromatin and kinetochore function. Plos One. 2: e317. PMID 17380189 DOI: 10.1371/Journal.Pone.0000317  0.383
2007 Slotkin RK, Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nature Reviews. Genetics. 8: 272-85. PMID 17363976 DOI: 10.1038/Nrg2072  0.805
2007 Zaratiegui M, Irvine DV, Martienssen RA. Noncoding RNAs and gene silencing. Cell. 128: 763-76. PMID 17320512 DOI: 10.1016/J.Cell.2007.02.016  0.397
2006 Locke SM, Martienssen RA. Slicing and spreading of heterochromatic silencing by RNA interference. Cold Spring Harbor Symposia On Quantitative Biology. 71: 497-503. PMID 17381332 DOI: 10.1101/Sqb.2006.71.062  0.44
2006 Ordway JM, Bedell JA, Citek RW, Nunberg A, Garrido A, Kendall R, Stevens JR, Cao D, Doerge RW, Korshunova Y, Holemon H, McPherson JD, Lakey N, Leon J, Martienssen RA, et al. Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets. Carcinogenesis. 27: 2409-23. PMID 16952911 DOI: 10.1093/Carcin/Bgl161  0.418
2006 Irvine DV, Zaratiegui M, Tolia NH, Goto DB, Chitwood DH, Vaughn MW, Joshua-Tor L, Martienssen RA. Argonaute slicing is required for heterochromatic silencing and spreading. Science (New York, N.Y.). 313: 1134-7. PMID 16931764 DOI: 10.1126/Science.1128813  0.387
2006 Ronemus M, Vaughn MW, Martienssen RA. MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. The Plant Cell. 18: 1559-74. PMID 16798886 DOI: 10.1105/Tpc.106.042127  0.355
2006 Garcia D, Collier SA, Byrne ME, Martienssen RA. Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway. Current Biology : Cb. 16: 933-8. PMID 16682355 DOI: 10.1016/J.Cub.2006.03.064  0.466
2006 Bortiri E, Chuck G, Vollbrecht E, Rocheford T, Martienssen R, Hake S. ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize. The Plant Cell. 18: 574-85. PMID 16399802 DOI: 10.1105/Tpc.105.039032  0.766
2006 Vaughn MW, Tanurdzic M, Martienssen R. Replication, repair, and reactivation. Developmental Cell. 9: 724-5. PMID 16326383 DOI: 10.1016/J.Devcel.2005.11.011  0.447
2005 May BP, Lippman ZB, Fang Y, Spector DL, Martienssen RA. Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. Plos Genetics. 1: e79. PMID 16389298 DOI: 10.1371/Journal.Pgen.0010079  0.748
2005 Rabinowicz PD, Citek R, Budiman MA, Nunberg A, Bedell JA, Lakey N, O'Shaughnessy AL, Nascimento LU, McCombie WR, Martienssen RA. Differential methylation of genes and repeats in land plants. Genome Research. 15: 1431-40. PMID 16204196 DOI: 10.1101/Gr.4100405  0.488
2005 Lippman Z, Gendrel AV, Colot V, Martienssen R. Profiling DNA methylation patterns using genomic tiling microarrays. Nature Methods. 2: 219-24. PMID 16163803 DOI: 10.1038/Nmeth0305-219  0.703
2005 Gendrel AV, Lippman Z, Martienssen R, Colot V. Profiling histone modification patterns in plants using genomic tiling microarrays. Nature Methods. 2: 213-8. PMID 16163802 DOI: 10.1038/Nmeth0305-213  0.731
2005 Vaughn MW, Martienssen R. It's a small RNA world, after all. Science (New York, N.Y.). 309: 1525-6. PMID 16141062 DOI: 10.1126/Science.1117805  0.45
2005 Nakayama N, Arroyo JM, Simorowski J, May B, Martienssen R, Irish VF. Gene trap lines define domains of gene regulation in Arabidopsis petals and stamens. The Plant Cell. 17: 2486-506. PMID 16055634 DOI: 10.1105/Tpc.105.033985  0.378
2005 Vollbrecht E, Springer PS, Goh L, Buckler ES, Martienssen R. Architecture of floral branch systems in maize and related grasses. Nature. 436: 1119-26. PMID 16041362 DOI: 10.1038/Nature03892  0.803
2005 Li F, Goto DB, Zaratiegui M, Tang X, Martienssen R, Cande WZ. Two novel proteins, dos1 and dos2, interact with rik1 to regulate heterochromatic RNA interference and histone modification. Current Biology : Cb. 15: 1448-57. PMID 16040243 DOI: 10.1016/J.Cub.2005.07.021  0.416
2005 Martienssen RA, Zaratiegui M, Goto DB. RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe. Trends in Genetics : Tig. 21: 450-6. PMID 15979194 DOI: 10.1016/J.Tig.2005.06.005  0.354
2005 Kato H, Goto DB, Martienssen RA, Urano T, Furukawa K, Murakami Y. RNA polymerase II is required for RNAi-dependent heterochromatin assembly. Science (New York, N.Y.). 309: 467-9. PMID 15947136 DOI: 10.1126/Science.1114955  0.357
2005 Kidner CA, Martienssen RA. The role of ARGONAUTE1 (AGO1) in meristem formation and identity. Developmental Biology. 280: 504-17. PMID 15882589 DOI: 10.1016/J.Ydbio.2005.01.031  0.402
2005 Martienssen RA, Doerge RW, Colot V. Epigenomic mapping in Arabidopsis using tiling microarrays Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 13: 299-308. PMID 15868423 DOI: 10.1007/S10577-005-1507-2  0.458
2005 Katari MS, Balija V, Wilson RK, Martienssen RA, McCombie WR. Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. Genome Research. 15: 496-504. PMID 15805491 DOI: 10.1101/Gr.3239105  0.418
2005 Vaughn MW, Martienssen RA. Finding the right template: RNA Pol IV, a plant-specific RNA polymerase. Molecular Cell. 17: 754-6. PMID 15780931 DOI: 10.1016/J.Molcel.2005.03.003  0.375
2005 Ronemus M, Martienssen R. RNA interference: methylation mystery. Nature. 433: 472-3. PMID 15690027 DOI: 10.1038/433472A  0.312
2005 Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rohlfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, ... Martienssen RA, et al. Sorghum genome sequencing by methylation filtration Plos Biology. 3. PMID 15660154 DOI: 10.1371/Journal.Pbio.0030013  0.434
2005 Kidner CA, Martienssen RA. The developmental role of microRNA in plants. Current Opinion in Plant Biology. 8: 38-44. PMID 15653398 DOI: 10.1016/J.Pbi.2004.11.008  0.358
2005 Mandell JG, Bähler J, Volpe TA, Martienssen RA, Cech TR. Global expression changes resulting from loss of telomeric DNA in fission yeast. Genome Biology. 6: R1. PMID 15642092 DOI: 10.1186/Gb-2004-6-1-R1  0.398
2005 Madlung A, Tyagi AP, Watson B, Jiang H, Kagochi T, Doerge RW, Martienssen R, Comai L. Genomic changes in synthetic Arabidopsis polyploids. The Plant Journal : For Cell and Molecular Biology. 41: 221-30. PMID 15634199 DOI: 10.1111/J.1365-313X.2004.02297.X  0.453
2005 Hansen KR, Burns G, Mata J, Volpe TA, Martienssen RA, Bähler J, Thon G. Global effects on gene expression in fission yeast by silencing and RNA interference machineries. Molecular and Cellular Biology. 25: 590-601. PMID 15632061 DOI: 10.1128/Mcb.25.2.590-601.2005  0.474
2005 Tanurdžić M, Doerge R, Martienssen R. Microarrays: Design, analysis, and applications in functional genomics Archive of Oncology. 13: 124-125. DOI: 10.2298/A000503124T  0.395
2004 Jeffrey Chen Z, Wang J, Tian L, Lee HS, Wang JJ, Chen M, Lee JJ, Josefsson C, Madlung A, Watson B, Lippman Z, Vaughn M, Chris Pires J, Colot V, Doerge RW, Martienssen RA, et al. The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects. Biological Journal of the Linnean Society. Linnean Society of London. 82: 689-700. PMID 18079994 DOI: 10.1111/J.1095-8312.2004.00351.X  0.446
2004 Martienssen R, Lippman Z, May B, Ronemus M, Vaughn MW. Transposons, tandem repeats, and the silencing of imprinted genes. Cold Spring Harbor Symposia On Quantitative Biology. 69: 371-380. PMID 16117670 DOI: 10.1101/Sqb.2004.69.371  0.709
2004 Lippman Z, Martienssen R. The role of RNA interference in heterochromatic silencing. Nature. 431: 364-70. PMID 15372044 DOI: 10.1038/Nature02875  0.733
2004 Lippman Z, Gendrel AV, Black M, Vaughn MW, Dedhia N, McCombie WR, Lavine K, Mittal V, May B, Kasschau KD, Carrington JC, Doerge RW, Colot V, Martienssen R. Role of transposable elements in heterochromatin and epigenetic control. Nature. 430: 471-6. PMID 15269773 DOI: 10.1038/Nature02651  0.751
2004 Groover A, Fontana JR, Dupper G, Ma C, Martienssen R, Strauss S, Meilan R. Gene and enhancer trap tagging of vascular-expressed genes in poplar trees. Plant Physiology. 134: 1742-51. PMID 15051863 DOI: 10.1104/Pp.103.034330  0.428
2004 Martienssen RA, Rabinowicz PD, O'Shaughnessy A, McCombie WR. Sequencing the maize genome. Current Opinion in Plant Biology. 7: 102-7. PMID 15003207 DOI: 10.1016/J.Pbi.2004.01.010  0.376
2004 Kidner CA, Martienssen RA. Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature. 428: 81-4. PMID 14999284 DOI: 10.1038/Nature02366  0.338
2004 Bastow R, Mylne JS, Lister C, Lippman Z, Martienssen RA, Dean C. Vernalization requires epigenetic silencing of FLC by histone methylation. Nature. 427: 164-7. PMID 14712277 DOI: 10.1038/Nature02269  0.736
2004 Martienssen RA. Crop Plant Genome Sequence Crop Science. 44: 1898-1899. DOI: 10.2135/Cropsci2004.1898  0.392
2003 Lippman Z, May B, Yordan C, Singer T, Martienssen R. Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. Plos Biology. 1: E67. PMID 14691539 DOI: 10.1371/Journal.Pbio.0000067  0.752
2003 Palmer LE, Rabinowicz PD, O'Shaughnessy AL, Balija VS, Nascimento LU, Dike S, de la Bastide M, Martienssen RA, McCombie WR. Maize genome sequencing by methylation filtration. Science (New York, N.Y.). 302: 2115-7. PMID 14684820 DOI: 10.1126/Science.1091265  0.432
2003 Brenner ED, Stevenson DW, McCombie RW, Katari MS, Rudd SA, Mayer KF, Palenchar PM, Runko SJ, Twigg RW, Dai G, Martienssen RA, Benfey PN, Coruzzi GM. Expressed sequence tag analysis in Cycas, the most primitive living seed plant. Genome Biology. 4: R78. PMID 14659015 DOI: 10.1186/Gb-2003-4-12-R78  0.418
2003 Rabinowicz PD, Palmer LE, May BP, Hemann MT, Lowe SW, McCombie WR, Martienssen RA. Genes and transposons are differentially methylated in plants, but not in mammals. Genome Research. 13: 2658-64. PMID 14656970 DOI: 10.1101/Gr.1784803  0.481
2003 Song JJ, Liu J, Tolia NH, Schneiderman J, Smith SK, Martienssen RA, Hannon GJ, Joshua-Tor L. The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes. Nature Structural Biology. 10: 1026-32. PMID 14625589 DOI: 10.1038/Nsb1016  0.303
2003 Martienssen RA. Maintenance of heterochromatin by RNA interference of tandem repeats. Nature Genetics. 35: 213-4. PMID 14593407 DOI: 10.1038/Ng1252  0.347
2003 Byrne ME, Kidner CA, Martienssen RA. Plant stem cells: divergent pathways and common themes in shoots and roots. Current Opinion in Genetics & Development. 13: 551-7. PMID 14550423 DOI: 10.1016/J.Gde.2003.08.008  0.337
2003 May BP, Liu H, Vollbrecht E, Senior L, Rabinowicz PD, Roh D, Pan X, Stein L, Freeling M, Alexander D, Martienssen R. Maize-targeted mutagenesis: A knockout resource for maize. Proceedings of the National Academy of Sciences of the United States of America. 100: 11541-6. PMID 12954979 DOI: 10.1073/Pnas.1831119100  0.793
2003 Byrne ME, Groover AT, Fontana JR, Martienssen RA. Phyllotactic pattern and stem cell fate are determined by the Arabidopsis homeobox gene BELLRINGER. Development (Cambridge, England). 130: 3941-50. PMID 12874117 DOI: 10.1242/Dev.00620  0.324
2003 Groover AT, Fontana JR, Arroyo JM, Yordan C, McCombie WR, Martienssen RA. Secretion trap tagging of secreted and membrane-spanning proteins using Arabidopsis gene traps. Plant Physiology. 132: 698-708. PMID 12805598 DOI: 10.1104/Pp.103.020099  0.371
2003 Muskett PR, Clissold L, Marocco A, Springer PS, Martienssen R, Dean C. A resource of mapped dissociation launch pads for targeted insertional mutagenesis in the Arabidopsis genome. Plant Physiology. 132: 506-16. PMID 12805583 DOI: 10.1104/Pp.102.016535  0.77
2003 Yu Y, Rambo T, Currie J, Saski C, Kim HR, Collura K, Thompson S, Simmons J, Yang TJ, Nah G, Patel AJ, Thurmond S, Henry D, Oates R, Palmer M, ... ... Martienssen RA, et al. In-depth view of structure, activity, and evolution of rice chromosome 10 Science. 300: 1566-1569. PMID 12791992 DOI: 10.1126/Science.1083523  0.38
2003 Volpe T, Schramke V, Hamilton GL, White SA, Teng G, Martienssen RA, Allshire RC. RNA interference is required for normal centromere function in fission yeast. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 11: 137-46. PMID 12733640 DOI: 10.1023/A:1022815931524  0.462
2003 Rabinowicz PD, McCombie WR, Martienssen RA. Gene enrichment in plant genomic shotgun libraries. Current Opinion in Plant Biology. 6: 150-6. PMID 12667872 DOI: 10.1016/S1369-5266(03)00008-6  0.393
2003 Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA. Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics : Tig. 19: 141-7. PMID 12615008 DOI: 10.1016/S0168-9525(03)00015-5  0.419
2003 Kidner CA, Martienssen RA. Macro effects of microRNAs in plants. Trends in Genetics : Tig. 19: 13-6. PMID 12493243 DOI: 10.1016/S0168-9525(02)00011-2  0.318
2003 May BP, Martienssen RA. Transposon Mutagenesis in the Study of Plant Development Critical Reviews in Plant Sciences. 22: 1-35. DOI: 10.1080/713610849  0.429
2002 Volpe TA, Kidner C, Hall IM, Teng G, Grewal SI, Martienssen RA. Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science (New York, N.Y.). 297: 1833-7. PMID 12193640 DOI: 10.1126/Science.1074973  0.458
2002 Gendrel AV, Lippman Z, Yordan C, Colot V, Martienssen RA. Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science (New York, N.Y.). 297: 1871-3. PMID 12077425 DOI: 10.1126/Science.1074950  0.719
2002 Mardis E, McPherson J, Martienssen R, Wilson RK, Richard McCombie W. What is finished, and why does it matter Genome Research. 12: 669-671. PMID 11997333 DOI: 10.1101/Gr.032102  0.329
2002 Venglat SP, Dumonceaux T, Rozwadowski K, Parnell L, Babic V, Keller W, Martienssen R, Selvaraj G, Datla R. The homeobox gene brevipedicellus is a key regulator of inflorescence architecture in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 99: 4730-4735. PMID 11917137 DOI: 10.1073/Pnas.072626099  0.402
2002 Kidner CA, Timmermans MCP, Byrne ME, Martienssen RA. Developmental genetics of the angiosperm leaf Advances in Botanical Research. 38: 191-234. DOI: 10.1016/S0065-2296(02)38030-3  0.353
2001 Martienssen RA, Colot V. DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science (New York, N.Y.). 293: 1070-4. PMID 11498574 DOI: 10.1126/Science.293.5532.1070  0.468
2001 Martienssen R, McCombie WR. The first plant genome. Cell. 105: 571-4. PMID 11389827 DOI: 10.1016/S0092-8674(01)00382-8  0.367
2001 Martienssen R. Chipping away at chromatin. Nature Genetics. 27: 240-241. PMID 11242099 DOI: 10.1038/85787  0.385
2001 Singer T, Yordan C, Martienssen RA. Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes & Development. 15: 591-602. PMID 11238379 DOI: 10.1101/Gad.193701  0.472
2001 Byrne M, Timmermans M, Kidner C, Martienssen R. Development of leaf shape. Current Opinion in Plant Biology. 4: 38-43. PMID 11163166 DOI: 10.1016/S1369-5266(00)00133-3  0.379
2001 Settles AM, Baron A, Barkan A, Martienssen RA. Duplication and suppression of chloroplast protein translocation genes in maize. Genetics. 157: 349-60. PMID 11139515  0.7
2000 Martienssen RA. Weeding out the genes: the Arabidopsis genome project. Functional & Integrative Genomics. 1: 2-11. PMID 11793217 DOI: 10.1007/S101420000006  0.407
2000 Petersen M, Brodersen P, Naested H, Andreasson E, Lindhart U, Johansen B, Nielsen HB, Lacy M, Austin MJ, Parker JE, Sharma SB, Klessig DF, Martienssen R, Mattsson O, Jensen AB, et al. Arabidopsis map kinase 4 negatively regulates systemic acquired resistance. Cell. 103: 1111-20. PMID 11163186 DOI: 10.1016/S0092-8674(00)00213-0  0.33
2000 Byrne ME, Barley R, Curtis M, Arroyo JM, Dunham M, Hudson A, Martienssen RA. Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis. Nature. 408: 967-71. PMID 11140682 DOI: 10.1038/35050091  0.414
2000 Chory J, Ecker JR, Briggs S, Caboche M, Coruzzi GM, Cook D, Dangl J, Grant S, Guerinot ML, Henikoff S, Martienssen R, Okada K, Raikhel NV, Somerville CR, Weigel D. National Science Foundation-Sponsored Workshop Report: 'The 2010 Project': Functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them Plant Physiology. 123: 423-425. PMID 10859172 DOI: 10.1104/Pp.123.2.423  0.31
2000 Springer PS, Holding DR, Groover A, Yordan C, Martienssen RA. The essential Mcm7 protein PROLIFERA is localized to the nucleus of dividing cells during the G(1) phase and is required maternally for early Arabidopsis development. Development (Cambridge, England). 127: 1815-22. PMID 10751170  0.75
2000 McCombie WR, De la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Yordan C, Sehkon M, Murray J, Sheet P, Cordes M, Threideh J, ... ... Martienssen R, et al. The complete sequence of a heterochromatic island from a higher eukaryote Cell. 100: 377-386. PMID 10676819 DOI: 10.1016/S0092-8674(00)80673-X  0.359
2000 Park SH, Park SH, Chin HG, Cho MJ, Martienssen RA, Han C. Inhibitor of striate conditionally suppresses cell proliferation in variegated maize. Genes & Development. 14: 1005-1016. DOI: 10.1101/Gad.14.8.1005  0.366
2000 Martienssen RA. Weeding out the genes: the Functional and Integrative Genomics. 1: 2. DOI: 10.1007/S101420050002  0.349
1999 Copenhaver GP, Nickel K, Kuromori T, Benito MI, Kaul S, Lin X, Bevan M, Murphy G, Harris B, Parnell LD, McCombie WR, Martienssen RA, Marra M, Preuss D. Genetic definition and sequence analysis of Arabidopsis centromeres. Science (New York, N.Y.). 286: 2468-74. PMID 10617454 DOI: 10.1126/Science.286.5449.2468  0.415
1999 Mayer K, Schüller C, Wambutt R, Murphy G, Volckaert G, Pohl T, Düsterhöft A, Stiekema W, Entian KD, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, ... ... Martienssen R, et al. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Nature. 402: 769-77. PMID 10617198 DOI: 10.1038/47134  0.472
1999 Rabinowicz PD, Schutz K, Dedhia N, Yordan C, Parnell LD, Stein L, McCombie WR, Martienssen RA. Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nature Genetics. 23: 305-8. PMID 10545948 DOI: 10.1038/15479  0.498
1999 Martienssen R, Irish V. Copying out our ABCs: the role of gene redundancy in interpreting genetic hierarchies. Trends in Genetics : Tig. 15: 435-7. PMID 10529802 DOI: 10.1016/S0168-9525(99)01833-8  0.422
1999 Mozo T, Dewar K, Dunn P, Ecker JR, Fischer S, Kloska S, Lehrach H, Marra M, Martienssen R, Meier-Ewert S, Altmann T. A complete BAC-based physical map of the Arabidopsis thaliana genome Nature Genetics. 22: 271-275. PMID 10391215 DOI: 10.1038/10334  0.37
1999 Marra M, Kucaba T, Sekhon M, Hillier L, Martienssen R, Chinwalla A, Crockett J, Fedele J, Grover H, Gund C, McCombie WR, McDonald K, McPherson J, Mudd N, Parnell L, et al. zA map for sequence analysis of the Arabidopsis thaliana genome. Nature Genetics. 22: 265-70. PMID 10391214 DOI: 10.1038/10327  0.362
1999 Martienssen R, Henikoff S. The House and Garden guide to chromatin remodelling Nature Genetics. 22: 6-7. PMID 10319848 DOI: 10.1038/8708  0.451
1999 Bevan M, Bancroft I, Mewes HW, Martienssen R, McCombie R. Clearing a path through the jungle: Progress in Arabidopsis genomics Bioessays. 21: 110-120. PMID 10193185 DOI: 10.1002/(Sici)1521-1878(199902)21:2<110::Aid-Bies5>3.0.Co;2-V  0.419
1998 Bevan M, Bennetzen JL, Martienssen R. Genome studies and molecular evolution. Commonalities, contrasts, continuity and change in plant genomes Current Opinion in Plant Biology. 1: 101-102. PMID 10066580 DOI: 10.1016/S1369-5266(98)80009-5  0.586
1998 Settles AM, Martienssen R. Old and new pathways of protein export in chloroplasts and bacteria. Trends in Cell Biology. 8: 494-501. PMID 9861672 DOI: 10.1016/S0962-8924(98)01387-7  0.674
1998 Martienssen R. Transposons, DNA methylation and gene control Trends in Genetics. 14: 263-264. PMID 9676527 DOI: 10.1016/S0168-9525(98)01518-2  0.468
1998 Martienssen R. Chromosomal imprinting in plants. Current Opinion in Genetics & Development. 8: 240-4. PMID 9610416 DOI: 10.1016/S0959-437X(98)80147-0  0.443
1998 Martienssen RA. Functional genomics: probing plant gene function and expression with transposons. Proceedings of the National Academy of Sciences of the United States of America. 95: 2021-6. PMID 9482828 DOI: 10.1073/Pnas.95.5.2021  0.469
1998 Martienssen R. Cell death: fatal induction in plants. Current Biology : Cb. 7: R534-7. PMID 9285704 DOI: 10.1016/S0960-9822(06)00274-0  0.381
1997 Settles AM, Yonetani A, Baron A, Bush DR, Cline K, Martienssen R. Sec-independent protein translocation by the maize Hcf106 protein. Science (New York, N.Y.). 278: 1467-70. PMID 9367960 DOI: 10.1126/Science.278.5342.1467  0.71
1997 Martienssen R. Epigenetic phenomena: paramutation and gene silencing in plants. Current Biology : Cb. 6: 810-3. PMID 8805298 DOI: 10.1016/S0960-9822(02)00601-2  0.465
1996 Nussaume L, Harrison K, Klimyuk V, Martienssen R, Sundaresan V, Jones JD. Analysis of splice donor and acceptor site function in a transposable gene trap derived from the maize element Activator. Molecular & General Genetics : Mgg. 249: 91-101. PMID 8552039 DOI: 10.1007/Bf00290240  0.649
1996 Russo VEA, Martienssen RA, Riggs AD. Preface/Front Matter Cold Spring Harbor Monograph Archive. 32. DOI: 10.1101/087969490.32.I  0.404
1996 Martienssen RA. Essentials of Plant Development Cold Spring Harbor Monograph Archive. 32: 611-617. DOI: 10.1101/087969490.32.611  0.414
1996 Martienssen RA. Epigenetic Silencing of Mu Transposable Elements in Maize Cold Spring Harbor Monograph Archive. 32: 593-608. DOI: 10.1101/087969490.32.593  0.477
1996 Meins F, Russo VEA, Martienssen RA, Riggs AD. Epigenetic modifications and gene silencing in plants. Cold Spring Harbor Monograph Archive. 32: 415-442. DOI: 10.1101/087969490.32.415  0.424
1996 Kermicle JL, Russo VEA, Martienssen RA, Riggs AD. Epigenetic Silencing and Activation of a Maize r Gene Cold Spring Harbor Monograph Archive. 32: 267-287. DOI: 10.1101/087969490.32.267  0.324
1996 Finnegan EJ, Russo VEA, Martienssen RA, Riggs AD. The Role of DNA Methylation in Plant Development Cold Spring Harbor Monograph Archive. 32: 127-140. DOI: 10.1101/087969490.32.127  0.406
1996 Jost JP, Russo VEA, Martienssen RA, Riggs AD. Mechanism of DNA methlyation in vertebrates and its biological significance. Cold Spring Harbor Monograph Archive. 32: 109-125. DOI: 10.1101/087969490.32.109  0.353
1995 Springer PS, McCombie WR, Sundaresan V, Martienssen RA. Gene trap tagging of PROLIFERA, an essential MCM2-3-5-like gene in Arabidopsis. Science (New York, N.Y.). 268: 877-80. PMID 7754372 DOI: 10.1126/Science.7754372  0.815
1995 Das L, Martienssen R. Site-selected transposon mutagenesis at the hcf106 locus in maize. The Plant Cell. 7: 287-294. PMID 7734963 DOI: 10.1105/Tpc.7.3.287  0.364
1995 Sundaresan V, Springer P, Volpe T, Haward S, Jones JD, Dean C, Ma H, Martienssen R. Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes & Development. 9: 1797-810. PMID 7622040 DOI: 10.1101/Gad.9.14.1797  0.81
1995 Martienssen RA, Richards EJ. DNA methylation in eukaryotes. Current Opinion in Genetics & Development. 5: 234-42. PMID 7613094 DOI: 10.1016/0959-437X(95)80014-X  0.388
1993 Vongs A, Kakutani T, Martienssen RA, Richards EJ. Arabidopsis thaliana DNA methylation mutants. Science (New York, N.Y.). 260: 1926-8. PMID 8316832 DOI: 10.1126/Science.8316832  0.404
1992 Han CD, Coe EH, Martienssen RA. Molecular cloning and characterization of iojap (ij), a pattern striping gene of maize. The Embo Journal. 11: 4037-46. PMID 1382980 DOI: 10.1002/J.1460-2075.1992.Tb05497.X  0.467
1991 Barkan A, Martienssen RA. Inactivation of maize transposon Mu suppresses a mutant phenotype by activating an outward-reading promoter near the end of Mu1 Proceedings of the National Academy of Sciences of the United States of America. 88: 3502-3506. PMID 1849660 DOI: 10.1073/Pnas.88.8.3502  0.358
1991 Doseff A, Martienssen R, Sundaresan V. Somatic excision of the Mu1 transposable element of maize. Nucleic Acids Research. 19: 579-84. PMID 1849263 DOI: 10.1093/Nar/19.3.579  0.633
1990 Martienssen R, Barkan A, Taylor WC, Freeling M. Somatically heritable switches in the DNA modification of Mu transposable elements monitored with a suppressible mutant in maize Genes and Development. 4: 331-343. PMID 2159936 DOI: 10.1101/Gad.4.3.331  0.716
1989 Martienssen RA, Baulcombe DC. An unusual wheat insertion sequence (WIS1) lies upstream of an alpha-amylase gene in hexaploid wheat, and carries a "minisatellite" array. Molecular & General Genetics : Mgg. 217: 401-10. PMID 2549380 DOI: 10.1007/Bf02464910  0.347
1989 Martienssen RA, Barkan A, Freeling M, Taylor WC. Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator Embo Journal. 8: 1633-1639. PMID 2548850  0.695
1989 Martienssen RA, Barkan A, Freeling M, Taylor WC. Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator. The Embo Journal. 8: 1633-1639. DOI: 10.1002/J.1460-2075.1989.Tb03553.X  0.716
1988 Huttly AK, Martienssen RA, Baulcombe DC. Sequence heterogeneity and differential expression of the alpha-Amy2 gene family in wheat. Molecular & General Genetics : Mgg. 214: 232-40. PMID 2467183 DOI: 10.1007/Bf00337716  0.363
1987 Baulcombe DC, Huttly AK, Martienssen RA, Barker RF, Jarvis MG. A novel wheat α-amylase gene (α-Amy3) Mgg Molecular &Amp; General Genetics. 209: 33-40. PMID 17186618 DOI: 10.1007/Bf00329833  0.301
1987 Baulcombe D, Huttly A, Martienssen R. Hormonal and development control of gene expression in wheat. Biochemical Society Transactions. 15: 9-11. PMID 3556746 DOI: 10.1042/Bst0150009  0.554
1987 Taylor WC, Barkan A, Martienssen RA. Use of nuclear mutants in the analysis of chloroplast development. Developmental Genetics. 8: 305-320. PMID 3502977 DOI: 10.1002/Dvg.1020080503  0.325
1983 Pfeifer F, Betlach M, Martienssen R, Friedman J, Boyer HW. Transposable elements of Halobacterium halobium Mgg Molecular & General Genetics. 191: 182-188. DOI: 10.1007/Bf00334811  0.368
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