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Andrew Feinberg - Publications

Affiliations: 
Johns Hopkins University, Baltimore, MD 
Area:
Biochemistry, Molecular Biology
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102 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Schrott R, Feinberg JI, Newschaffer CJ, Hertz-Picciotto I, Croen LA, Fallin MD, Volk HE, Ladd-Acosta C, Feinberg AP. Exposure to air pollution is associated with DNA methylation changes in sperm. Environmental Epigenetics. 10: dvae003. PMID 38559770 DOI: 10.1093/eep/dvae003  0.594
2023 Feinberg JI, Schrott R, Ladd-Acosta C, Newschaffer CJ, Hertz-Picciotto I, Croen LA, Daniele Fallin M, Feinberg AP, Volk HE. Epigenetic changes in sperm are associated with paternal and child quantitative autistic traits in an autism-enriched cohort. Molecular Psychiatry. PMID 37100868 DOI: 10.1038/s41380-023-02046-7  0.637
2023 Fang Y, Ji Z, Zhou W, Abante J, Koldobskiy MA, Ji H, Feinberg AP. DNA methylation entropy is associated with DNA sequence features and developmental epigenetic divergence. Nucleic Acids Research. PMID 36762477 DOI: 10.1093/nar/gkad050  0.355
2021 Bakulski KM, Dou JF, Feinberg JI, Aung MT, Ladd-Acosta C, Volk HE, Newschaffer CJ, Croen LA, Hertz-Picciotto I, Levy SE, Landa R, Feinberg AP, Fallin MD. Autism-Associated DNA Methylation at Birth From Multiple Tissues Is Enriched for Autism Genes in the Early Autism Risk Longitudinal Investigation. Frontiers in Molecular Neuroscience. 14: 775390. PMID 34899183 DOI: 10.3389/fnmol.2021.775390  0.655
2021 Koldobskiy MA, Jenkinson G, Abante J, Rodriguez DiBlasi VA, Zhou W, Pujadas E, Idrizi A, Tryggvadottir R, Callahan C, Bonifant CL, Rabin KR, Brown PA, Ji H, Goutsias J, Feinberg AP. Converging genetic and epigenetic drivers of paediatric acute lymphoblastic leukaemia identified by an information-theoretic analysis. Nature Biomedical Engineering. 5: 360-376. PMID 33859388 DOI: 10.1038/s41551-021-00703-2  0.373
2020 Koldobskiy MA, Abante J, Jenkinson G, Pujadas E, Tetens A, Zhao F, Tryggvadottir R, Idrizi A, Reinisch A, Majeti R, Goutsias J, Feinberg AP. A Dysregulated DNA Methylation Landscape Linked to Gene Expression in MLL-Rearranged AML. Epigenetics. 1-18. PMID 32114880 DOI: 10.1080/15592294.2020.1734149  0.385
2019 Küpers LK, Monnereau C, Sharp GC, Yousefi P, Salas LA, Ghantous A, Page CM, Reese SE, Wilcox AJ, Czamara D, Starling AP, Novoloaca A, Lent S, Roy R, Hoyo C, ... ... Feinberg AP, et al. Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight. Nature Communications. 10: 1893. PMID 31015461 DOI: 10.1038/S41467-019-09671-3  0.312
2019 Jenkinson G, Abante J, Koldobskiy MA, Feinberg AP, Goutsias J. Ranking genomic features using an information-theoretic measure of epigenetic discordance. Bmc Bioinformatics. 20: 175. PMID 30961526 DOI: 10.1186/S12859-019-2777-6  0.344
2019 Ladd-Acosta C, Feinberg JI, Brown SC, Lurmann FW, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Feinberg AP, Fallin MD, Volk HE. Epigenetic marks of prenatal air pollution exposure found in multiple tissues relevant for child health. Environment International. 126: 363-376. PMID 30826615 DOI: 10.1016/J.Envint.2019.02.028  0.617
2018 Andrews SV, Sheppard B, Windham GC, Schieve LA, Schendel DE, Croen LA, Chopra P, Alisch RS, Newschaffer CJ, Warren ST, Feinberg AP, Fallin MD, Ladd-Acosta C. Case-control meta-analysis of blood DNA methylation and autism spectrum disorder. Molecular Autism. 9: 40. PMID 29988321 DOI: 10.1186/S13229-018-0224-6  0.58
2018 Kular L, Liu Y, Ruhrmann S, Zheleznyakova G, Marabita F, Gomez-Cabrero D, James T, Ewing E, Lindén M, Górnikiewicz B, Aeinehband S, Stridh P, Link J, Andlauer TFM, Gasperi C, ... ... Feinberg AP, et al. DNA methylation as a mediator of HLA-DRB1*15:01 and a protective variant in multiple sclerosis. Nature Communications. 9: 2397. PMID 29921915 DOI: 10.1038/S41467-018-04732-5  0.346
2018 Jenkinson G, Abante J, Feinberg AP, Goutsias J. An information-theoretic approach to the modeling and analysis of whole-genome bisulfite sequencing data. Bmc Bioinformatics. 19: 87. PMID 29514626 DOI: 10.1186/s12859-018-2086-5  0.313
2018 Koldobskiy M, Jenkinson G, Pujadas E, Martin A, Eberhart C, Goutsias J, Raabe E, Feinberg A. DIPG-74. DNA METHYLATION STOCHASTICITY IN DIPG Neuro-Oncology. 20: i64-i64. DOI: 10.1093/Neuonc/Noy059.166  0.39
2017 Marabita F, Almgren M, Sjöholm LK, Kular L, Liu Y, James T, Kiss NB, Feinberg AP, Olsson T, Kockum I, Alfredsson L, Ekström TJ, Jagodic M. Smoking induces DNA methylation changes in Multiple Sclerosis patients with exposure-response relationship. Scientific Reports. 7: 14589. PMID 29109506 DOI: 10.1038/S41598-017-14788-W  0.348
2017 Andrews SV, Ellis SE, Bakulski KM, Sheppard B, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Feinberg AP, Arking DE, Ladd-Acosta C, Fallin MD. Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder. Nature Communications. 8: 1011. PMID 29066808 DOI: 10.1038/S41467-017-00868-Y  0.61
2017 McDonald OG, Li X, Saunders T, Tryggvadottir R, Mentch SJ, Warmoes MO, Word AE, Carrer A, Salz TH, Natsume S, Stauffer KM, Makohon-Moore A, Zhong Y, Wu H, Wellen KE, ... ... Feinberg AP, et al. Epigenomic reprogramming during pancreatic cancer progression links anabolic glucose metabolism to distant metastasis. Nature Genetics. PMID 28092686 DOI: 10.1038/Ng.3753  0.337
2016 Andrews SV, Ladd-Acosta C, Feinberg AP, Hansen KD, Fallin MD. "Gap hunting" to characterize clustered probe signals in Illumina methylation array data. Epigenetics & Chromatin. 9: 56. PMID 27980682 DOI: 10.1186/S13072-016-0107-Z  0.608
2016 Li X, Liu Y, Salz T, Hansen KD, Feinberg AP. Whole genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver. Genome Research. PMID 27737935 DOI: 10.1101/Gr.211854.116  0.511
2016 Joubert BR, Felix JF, Yousefi P, Bakulski KM, Just AC, Breton C, Reese SE, Markunas CA, Richmond RC, Xu CJ, Küpers LK, Oh SS, Hoyo C, Gruzieva O, Söderhäll C, ... ... Feinberg AP, et al. DNA Methylation in Newborns and Maternal Smoking in Pregnancy: Genome-wide Consortium Meta-analysis. American Journal of Human Genetics. PMID 27040690 DOI: 10.1016/J.Ajhg.2016.02.019  0.644
2015 Vandiver AR, Idrizi A, Rizzardi L, Feinberg AP, Hansen KD. DNA methylation is stable during replication and cell cycle arrest. Scientific Reports. 5: 17911. PMID 26648411 DOI: 10.1038/Srep17911  0.301
2015 Ladd-Acosta C, Shu C, Lee BK, Gidaya N, Singer A, Schieve LA, Schendel DE, Jones N, Daniels JL, Windham GC, Newschaffer CJ, Croen LA, Feinberg AP, Daniele Fallin M. Presence of an epigenetic signature of prenatal cigarette smoke exposure in childhood. Environmental Research. 144: 139-148. PMID 26610292 DOI: 10.1016/J.Envres.2015.11.014  0.565
2015 Jung N, Dai B, Gentles AJ, Majeti R, Feinberg AP. An LSC epigenetic signature is largely mutation independent and implicates the HOXA cluster in AML pathogenesis. Nature Communications. 6: 8489. PMID 26444494 DOI: 10.1038/Ncomms9489  0.331
2015 Feinberg JI, Bakulski KM, Jaffe AE, Tryggvadottir R, Brown SC, Goldman LR, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Daniele Fallin M, Feinberg AP. Paternal sperm DNA methylation associated with early signs of autism risk in an autism-enriched cohort. International Journal of Epidemiology. 44: 1199-210. PMID 25878217 DOI: 10.1093/Ije/Dyv028  0.305
2015 Schlaeger TM, Daheron L, Brickler TR, Entwisle S, Chan K, Cianci A, DeVine A, Ettenger A, Fitzgerald K, Godfrey M, Gupta D, McPherson J, Malwadkar P, Gupta M, Bell B, ... ... Feinberg AP, et al. A comparison of non-integrating reprogramming methods. Nature Biotechnology. 33: 58-63. PMID 25437882 DOI: 10.1038/Nbt.3070  0.73
2015 Sinha S, Thomas D, Yu L, Gentles AJ, Jung N, Corces-Zimmerman MR, Chan SM, Reinisch A, Feinberg AP, Dill DL, Majeti R. Mutant WT1 is associated with DNA hypermethylation of PRC2 targets in AML and responds to EZH2 inhibition. Blood. 125: 316-26. PMID 25398938 DOI: 10.1182/Blood-2014-03-566018  0.322
2015 Beerman I, Ziller M, Vandiver A, Gaudin R, Kirchhausen T, Feinberg A, Meissner A, Rossi D. AGE-associated clonal dominance of myeloid-biased HSC is underwritten by unique transcriptional and epigenetic alterations Experimental Hematology. 43: S49. DOI: 10.1016/J.Exphem.2015.06.065  0.342
2014 Timp W, Bravo HC, McDonald OG, Goggins M, Umbricht C, Zeiger M, Feinberg AP, Irizarry RA. Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors. Genome Medicine. 6: 61. PMID 25191524 DOI: 10.1186/S13073-014-0061-Y  0.3
2014 Feinberg A. DNA methylation in cancer: three decades of discovery. Genome Medicine. 6: 36. PMID 25031622 DOI: 10.1186/Gm553  0.372
2014 Prusevich P, Kalin JH, Ming SA, Basso M, Givens J, Li X, Hu J, Taylor MS, Cieniewicz AM, Hsiao PY, Huang R, Roberson H, Adejola N, Avery LB, Casero RA, ... ... Feinberg AP, et al. A selective phenelzine analogue inhibitor of histone demethylase LSD1. Acs Chemical Biology. 9: 1284-93. PMID 24707965 DOI: 10.1021/Cb500018S  0.357
2014 Liu Y, Li X, Aryee MJ, Ekström TJ, Padyukov L, Klareskog L, Vandiver A, Moore AZ, Tanaka T, Ferrucci L, Fallin MD, Feinberg AP. GeMes, clusters of DNA methylation under genetic control, can inform genetic and epigenetic analysis of disease. American Journal of Human Genetics. 94: 485-95. PMID 24656863 DOI: 10.1016/J.Ajhg.2014.02.011  0.451
2014 Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays. Bioinformatics (Oxford, England). 30: 1363-9. PMID 24478339 DOI: 10.1093/Bioinformatics/Btu049  0.616
2014 Hansen KD, Sabunciyan S, Langmead B, Nagy N, Curley R, Klein G, Klein E, Salamon D, Feinberg AP. Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization. Genome Research. 24: 177-84. PMID 24068705 DOI: 10.1101/Gr.157743.113  0.303
2014 Ladd-Acosta C, Hansen KD, Briem E, Fallin MD, Kaufmann WE, Feinberg AP. Common DNA methylation alterations in multiple brain regions in autism. Molecular Psychiatry. 19: 862-71. PMID 23999529 DOI: 10.1038/Mp.2013.114  0.645
2014 Jung N, Dai B, Gentles AJ, Murakami P, Majeti R, Feinberg AP. Epigenetic Signature of Leukemia Stem Cells Defines Subgroups Associated with Clinical Outcome and Cell of Origin in AML Blood. 124: 2147-2147. DOI: 10.1182/Blood.V124.21.2147.2147  0.333
2014 Thomas D, Sinha S, Gentles A, Jung N, Feinberg A, Dill D, Majeti R. Wilms' tumor 1 mutation drives DNA hypermethylation in AML and responds to EZH2-inhibitor Experimental Hematology. 42: S62. DOI: 10.1016/J.Exphem.2014.07.237  0.337
2013 Timp W, Feinberg AP. Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host. Nature Reviews. Cancer. 13: 497-510. PMID 23760024 DOI: 10.1038/nrc3486  0.304
2013 Liu Y, Aryee MJ, Padyukov L, Fallin MD, Hesselberg E, Runarsson A, Reinius L, Acevedo N, Taub M, Ronninger M, Shchetynsky K, Scheynius A, Kere J, Alfredsson L, Klareskog L, ... ... Feinberg AP, et al. Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis. Nature Biotechnology. 31: 142-7. PMID 23334450 DOI: 10.1038/Nbt.2487  0.407
2013 Feinberg AP. Epigenetics of Hematopoiesis, Stem Cell Reprogramming, and Cancer Blood. 122: SCI-47-SCI-47. DOI: 10.1182/blood.v122.21.sci-47.sci-47  0.374
2012 Sabunciyan S, Aryee MJ, Irizarry RA, Rongione M, Webster MJ, Kaufman WE, Murakami P, Lessard A, Yolken RH, Feinberg AP, Potash JB. Genome-wide DNA methylation scan in major depressive disorder. Plos One. 7: e34451. PMID 22511943 DOI: 10.1371/Journal.Pone.0034451  0.323
2012 Lee H, Jaffe AE, Feinberg JI, Tryggvadottir R, Brown S, Montano C, Aryee MJ, Irizarry RA, Herbstman J, Witter FR, Goldman LR, Feinberg AP, Fallin MD. DNA methylation shows genome-wide association of NFIX, RAPGEF2 and MSRB3 with gestational age at birth. International Journal of Epidemiology. 41: 188-99. PMID 22422452 DOI: 10.1093/Ije/Dyr237  0.354
2012 Jaffe AE, Feinberg AP, Irizarry RA, Leek JT. Significance analysis and statistical dissection of variably methylated regions. Biostatistics (Oxford, England). 13: 166-78. PMID 21685414 DOI: 10.1093/Biostatistics/Kxr013  0.354
2011 Kim K, Zhao R, Doi A, Ng K, Unternaehrer J, Cahan P, Huo H, Loh YH, Aryee MJ, Lensch MW, Li H, Collins JJ, Feinberg AP, Daley GQ. Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells. Nature Biotechnology. 29: 1117-9. PMID 22119740 DOI: 10.1038/Nbt.2052  0.776
2011 McDonald OG, Wu H, Timp W, Doi A, Feinberg AP. Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition. Nature Structural & Molecular Biology. 18: 867-74. PMID 21725293 DOI: 10.1038/Nsmb.2084  0.78
2011 Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, Feinberg AP. Increased methylation variation in epigenetic domains across cancer types. Nature Genetics. 43: 768-75. PMID 21706001 DOI: 10.1038/Ng.865  0.443
2011 Aryee MJ, Wu Z, Ladd-Acosta C, Herb B, Feinberg AP, Yegnasubramanian S, Irizarry RA. Accurate genome-scale percentage DNA methylation estimates from microarray data. Biostatistics (Oxford, England). 12: 197-210. PMID 20858772 DOI: 10.1093/Biostatistics/Kxq055  0.67
2010 Feinberg AP, Irizarry RA, Fradin D, Aryee MJ, Murakami P, Aspelund T, Eiriksdottir G, Harris TB, Launer L, Gudnason V, Fallin MD. Personalized epigenomic signatures that are stable over time and covary with body mass index. Science Translational Medicine. 2: 49ra67. PMID 20844285 DOI: 10.1126/Scitranslmed.3001262  0.31
2010 Fradin D, Cheslack-Postava K, Ladd-Acosta C, Newschaffer C, Chakravarti A, Arking DE, Feinberg A, Fallin MD. Parent-of-origin effects in autism identified through genome-wide linkage analysis of 16,000 SNPs. Plos One. 5. PMID 20824079 DOI: 10.1371/Journal.Pone.0012513  0.6
2010 Ji H, Ehrlich LI, Seita J, Murakami P, Doi A, Lindau P, Lee H, Aryee MJ, Irizarry RA, Kim K, Rossi DJ, Inlay MA, Serwold T, Karsunky H, Ho L, ... ... Feinberg AP, et al. Comprehensive methylome map of lineage commitment from haematopoietic progenitors. Nature. 467: 338-42. PMID 20720541 DOI: 10.1038/Nature09367  0.795
2010 Kim K, Doi A, Wen B, Ng K, Zhao R, Cahan P, Kim J, Aryee MJ, Ji H, Ehrlich LI, Yabuuchi A, Takeuchi A, Cunniff KC, Hongguang H, McKinney-Freeman S, ... ... Feinberg AP, et al. Epigenetic memory in induced pluripotent stem cells. Nature. 467: 285-90. PMID 20644535 DOI: 10.1038/Nature09342  0.77
2010 Ladd-Acosta C, Aryee MJ, Ordway JM, Feinberg AP. Comprehensive high-throughput arrays for relative methylation (CHARM). Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. Unit 20.1.1-19. PMID 20373514 DOI: 10.1002/0471142905.hg2001s65  0.662
2009 Doi A, Park IH, Wen B, Murakami P, Aryee MJ, Irizarry R, Herb B, Ladd-Acosta C, Rho J, Loewer S, Miller J, Schlaeger T, Daley GQ, Feinberg AP. Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nature Genetics. 41: 1350-3. PMID 19881528 DOI: 10.1038/Ng.471  0.789
2009 Cruz-Correa M, Zhao R, Oviedo M, Bernabe RD, Lacourt M, Cardona A, Lopez-Enriquez R, Wexner S, Cuffari C, Hylind L, Platz E, Cui H, Feinberg AP, Giardiello FM. Temporal stability and age-related prevalence of loss of imprinting of the insulin-like growth factor-2 gene. Epigenetics : Official Journal of the Dna Methylation Society. 4: 114-8. PMID 19242102 DOI: 10.4161/Epi.4.2.7954  0.334
2009 Wen B, Wu H, Shinkai Y, Irizarry RA, Feinberg AP. Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells. Nature Genetics. 41: 246-50. PMID 19151716 DOI: 10.1038/Ng.297  0.315
2009 Irizarry RA, Ladd-Acosta C, Wen B, Wu Z, Montano C, Onyango P, Cui H, Gabo K, Rongione M, Webster M, Ji H, Potash JB, Sabunciyan S, Feinberg AP. The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nature Genetics. 41: 178-86. PMID 19151715 DOI: 10.1038/Ng.298  0.668
2008 Wen B, Wu H, Bjornsson H, Green RD, Irizarry R, Feinberg AP. Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification. Genome Research. 18: 1806-13. PMID 18849526 DOI: 10.1101/Gr.067587.108  0.345
2008 Nguyen P, Cui H, Bisht KS, Sun L, Patel K, Lee RS, Kugoh H, Oshimura M, Feinberg AP, Gius D. CTCFL/BORIS is a methylation-independent DNA-binding protein that preferentially binds to the paternal H19 differentially methylated region. Cancer Research. 68: 5546-51. PMID 18632606 DOI: 10.1158/0008-5472.CAN-08-1005  0.342
2008 Bjornsson HT, Albert TJ, Ladd-Acosta CM, Green RD, Rongione MA, Middle CM, Irizarry RA, Broman KW, Feinberg AP. SNP-specific array-based allele-specific expression analysis. Genome Research. 18: 771-9. PMID 18369178 DOI: 10.1101/Gr.073254.107  0.603
2008 Irizarry RA, Ladd-Acosta C, Carvalho B, Wu H, Brandenburg SA, Jeddeloh JA, Wen B, Feinberg AP. Comprehensive high-throughput arrays for relative methylation (CHARM). Genome Research. 18: 780-90. PMID 18316654 DOI: 10.1101/Gr.7301508  0.653
2008 Yu W, Gius D, Onyango P, Muldoon-Jacobs K, Karp J, Feinberg AP, Cui H. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature. 451: 202-6. PMID 18185590 DOI: 10.1038/nature06468  0.304
2007 Ladd-Acosta C, Pevsner J, Sabunciyan S, Yolken RH, Webster MJ, Dinkins T, Callinan PA, Fan JB, Potash JB, Feinberg AP. DNA methylation signatures within the human brain. American Journal of Human Genetics. 81: 1304-15. PMID 17999367 DOI: 10.1086/524110  0.661
2007 Bjornsson HT, Brown LJ, Fallin MD, Rongione MA, Bibikova M, Wickham E, Fan JB, Feinberg AP. Epigenetic specificity of loss of imprinting of the IGF2 gene in Wilms tumors. Journal of the National Cancer Institute. 99: 1270-3. PMID 17686827 DOI: 10.1093/jnci/djm069  0.403
2007 Reinhold WC, Reimers MA, Maunakea AK, Kim S, Lababidi S, Scherf U, Shankavaram UT, Ziegler MS, Stewart C, Kouros-Mehr H, Cui H, Dolginow D, Scudiero DA, Pommier YG, Munroe DJ, ... Feinberg AP, et al. Detailed DNA methylation profiles of the E-cadherin promoter in the NCI-60 cancer cells. Molecular Cancer Therapeutics. 6: 391-403. PMID 17272646 DOI: 10.1158/1535-7163.Mct-06-0609  0.308
2005 Kaneda A, Feinberg AP. Loss of imprinting of IGF2: a common epigenetic modifier of intestinal tumor risk. Cancer Research. 65: 11236-40. PMID 16357124 DOI: 10.1158/0008-5472.CAN-05-2959  0.305
2005 Niemitz EL, Feinberg AP, Brandenburg SA, Grundy PE, DeBaun MR. Children with idiopathic hemihypertrophy and beckwith-wiedemann syndrome have different constitutional epigenotypes associated with wilms tumor. American Journal of Human Genetics. 77: 887-91. PMID 16252245 DOI: 10.1086/497540  0.647
2005 Mummert SK, Lobanenkov VA, Feinberg AP. Association of chromosome arm 16q loss with loss of imprinting of insulin-like growth factor-II in Wilms tumor. Genes, Chromosomes & Cancer. 43: 155-61. PMID 15761865 DOI: 10.1002/Gcc.20176  0.725
2004 Feinberg AP. The epigenetics of cancer etiology. Seminars in Cancer Biology. 14: 427-32. PMID 15489135 DOI: 10.1016/j.semcancer.2004.06.005  0.324
2004 Gius D, Cui H, Bradbury CM, Cook J, Smart DK, Zhao S, Young L, Brandenburg SA, Hu Y, Bisht KS, Ho AS, Mattson D, Sun L, Munson PJ, Chuang EY, ... ... Feinberg AP, et al. Distinct effects on gene expression of chemical and genetic manipulation of the cancer epigenome revealed by a multimodality approach. Cancer Cell. 6: 361-71. PMID 15488759 DOI: 10.1016/j.ccr.2004.08.029  0.335
2004 Niemitz EL, DeBaun MR, Fallon J, Murakami K, Kugoh H, Oshimura M, Feinberg AP. Microdeletion of LIT1 in familial Beckwith-Wiedemann syndrome. American Journal of Human Genetics. 75: 844-9. PMID 15372379 DOI: 10.1086/425343  0.676
2004 Niemitz EL, Feinberg AP. Epigenetics and assisted reproductive technology: a call for investigation. American Journal of Human Genetics. 74: 599-609. PMID 14991528 DOI: 10.1086/382897  0.64
2003 DeBaun MR, Niemitz EL, Feinberg AP. Association of in vitro fertilization with Beckwith-Wiedemann syndrome and epigenetic alterations of LIT1 and H19. American Journal of Human Genetics. 72: 156-60. PMID 12439823 DOI: 10.1086/346031  0.636
2003 Cruz-Correa M, Cui H, Giardiello FM, Palmer A, Hylind L, Feinberg A. Loss of imprinting of IGF2 is an epigenetic marker independently associated with colorectal cancer and not related to tobacco or alcohol consumption Gastroenterology. 124. DOI: 10.1016/S0016-5085(03)82783-X  0.315
2003 Cruz-Correa M, Cui H, Giardiello FM, Palmer A, Hylind L, Feinberg A. Loss of genomic imprinting is an epigenetic biomarker associated with early colorectal neoplasia in the general population Gastroenterology. 124. DOI: 10.1016/S0016-5085(03)82777-4  0.338
2002 Cui H, Onyango P, Brandenburg S, Wu Y, Hsieh CL, Feinberg AP. Loss of imprinting in colorectal cancer linked to hypomethylation of H19 and IGF2. Cancer Research. 62: 6442-6. PMID 12438232  0.372
2002 Feinberg AP, Cui H, Ohlsson R. DNA methylation and genomic imprinting: insights from cancer into epigenetic mechanisms. Seminars in Cancer Biology. 12: 389-98. PMID 12191638  0.334
2002 Onyango P, Jiang S, Uejima H, Shamblott MJ, Gearhart JD, Cui H, Feinberg AP. Monoallelic expression and methylation of imprinted genes in human and mouse embryonic germ cell lineages. Proceedings of the National Academy of Sciences of the United States of America. 99: 10599-604. PMID 12114541 DOI: 10.1073/Pnas.152327599  0.329
2002 Loukinov DI, Pugacheva E, Vatolin S, Pack SD, Moon H, Chernukhin I, Mannan P, Larsson E, Kanduri C, Vostrov AA, Cui H, Niemitz EL, Rasko JE, Docquier FM, Kistler M, ... ... Feinberg AP, et al. BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma. Proceedings of the National Academy of Sciences of the United States of America. 99: 6806-11. PMID 12011441 DOI: 10.1073/Pnas.092123699  0.68
2002 Rhee I, Bachman KE, Park BH, Jair KW, Yen RW, Schuebel KE, Cui H, Feinberg AP, Lengauer C, Kinzler KW, Baylin SB, Vogelstein B. DNMT1 and DNMT3b cooperate to silence genes in human cancer cells. Nature. 416: 552-6. PMID 11932749 DOI: 10.1038/416552A  0.702
2002 Strichman-Almashanu LZ, Lee RS, Onyango PO, Perlman E, Flam F, Frieman MB, Feinberg AP. A genome-wide screen for normally methylated human CpG islands that can identify novel imprinted genes. Genome Research. 12: 543-54. PMID 11932239 DOI: 10.1101/Gr.224102.  0.804
2002 DeBaun MR, Niemitz EL, McNeil DE, Brandenburg SA, Lee MP, Feinberg AP. Epigenetic alterations of H19 and LIT1 distinguish patients with Beckwith-Wiedemann syndrome with cancer and birth defects. American Journal of Human Genetics. 70: 604-11. PMID 11813134 DOI: 10.1086/338934  0.664
2002 Filippova GN, Qi CF, Ulmer JE, Moore JM, Ward MD, Hu YJ, Loukinov DI, Pugacheva EM, Klenova EM, Grundy PE, Feinberg AP, Cleton-Jansen AM, Moerland EW, Cornelisse CJ, Suzuki H, et al. Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter tts DNA-binding specificity. Cancer Research. 62: 48-52. PMID 11782357  0.31
2001 Ravenel JD, Broman KW, Perlman EJ, Niemitz EL, Jayawardena TM, Bell DW, Haber DA, Uejima H, Feinberg AP. Loss of imprinting of insulin-like growth factor-II (IGF2) gene in distinguishing specific biologic subtypes of Wilms tumor. Journal of the National Cancer Institute. 93: 1698-703. PMID 11717330 DOI: 10.1093/Jnci/93.22.1698  0.76
2001 Cui H, Niemitz EL, Ravenel JD, Onyango P, Brandenburg SA, Lobanenkov VV, Feinberg AP. Loss of imprinting of insulin-like growth factor-II in Wilms' tumor commonly involves altered methylation but not mutations of CTCF or its binding site. Cancer Research. 61: 4947-50. PMID 11431321  0.775
2000 Lee MP, Ravenel JD, Hu RJ, Lustig LR, Tomaselli G, Berger RD, Brandenburg SA, Litzi TJ, Bunton TE, Limb C, Francis H, Gorelikow M, Gu H, Washington K, Argani P, ... ... Feinberg AP, et al. Targeted disruption of the Kvlqt1 gene causes deafness and gastric hyperplasia in mice. The Journal of Clinical Investigation. 106: 1447-55. PMID 11120752 DOI: 10.1172/Jci10897  0.741
1999 Mitsuya K, Meguro M, Lee MP, Katoh M, Schulz TC, Kugoh H, Yoshida MA, Niikawa N, Feinberg AP, Oshimura M. LIT1, an imprinted antisense RNA in the human KvLQT1 locus identified by screening for differentially expressed transcripts using monochromosomal hybrids. Human Molecular Genetics. 8: 1209-17. PMID 10369866 DOI: 10.1093/HMG/8.7.1209  0.394
1999 Lee MP, DeBaun MR, Mitsuya K, Galonek HL, Brandenburg S, Oshimura M, Feinberg AP. Loss of imprinting of a paternally expressed transcript, with antisense orientation to KVLQT1, occurs frequently in Beckwith-Wiedemann syndrome and is independent of insulin-like growth factor II imprinting. Proceedings of the National Academy of Sciences of the United States of America. 96: 5203-8. PMID 10220444 DOI: 10.1073/Pnas.96.9.5203  0.373
1998 Randhawa GS, Cui H, Barletta JA, Strichman-Almashanu LZ, Talpaz M, Kantarjian H, Deisseroth AB, Champlin RC, Feinberg AP. Loss of imprinting in disease progression in chronic myelogenous leukemia. Blood. 91: 3144-7. PMID 9558368 DOI: 10.1182/Blood.V91.9.3144.3144_3144_3147  0.781
1997 Lee MP, DeBaun M, Randhawa G, Reichard BA, Elledge SJ, Feinberg AP. Low frequency of p57KIP2 mutation in Beckwith-Wiedemann syndrome. American Journal of Human Genetics. 61: 304-9. PMID 9311734 DOI: 10.1086/514858  0.304
1997 Lee MP, Hu RJ, Johnson LA, Feinberg AP. Human KVLQT1 gene shows tissue-specific imprinting and encompasses Beckwith-Wiedemann syndrome chromosomal rearrangements. Nature Genetics. 15: 181-5. PMID 9020845 DOI: 10.1038/ng0297-181  0.311
1996 Hu RJ, Lee MP, Johnson LA, Feinberg AP. A novel human homologue of yeast nucleosome assembly protein, 65 kb centromeric to the p57KIP2 gene, is biallelically expressed in fetal and adult tissues. Human Molecular Genetics. 5: 1743-8. PMID 8923002 DOI: 10.1093/hmg/5.11.1743  0.305
1996 Alders M, Bliek J, Redeker B, Ryan A, Feinberg A, Westerveld A, Little P, Mannens M. Cloning of candidate genes involved in the Beckwith-Wiedemann syndrome and childhood tumors. Medical and Pediatric Oncology. 27: 495-7. PMID 8827080 DOI: 10.1002/(Sici)1096-911X(199611)27:5<495::Aid-Mpo18>3.0.Co;2-9  0.36
1996 Matsuoka S, Thompson JS, Edwards MC, Barletta JM, Grundy P, Kalikin LM, Harper JW, Elledge SJ, Feinberg AP. Imprinting of the gene encoding a human cyclin-dependent kinase inhibitor, p57KIP2, on chromosome 11p15 Proceedings of the National Academy of Sciences of the United States of America. 93: 3026-3030. PMID 8610162 DOI: 10.1073/Pnas.93.7.3026  0.339
1994 Steenman MJ, Rainier S, Dobry CJ, Grundy P, Horon IL, Feinberg AP. Loss of imprinting of IGF2 is linked to reduced expression and abnormal methylation of H19 in Wilms' tumour. Nature Genetics. 7: 433-9. PMID 7920665 DOI: 10.1038/Ng0794-433  0.345
1993 Rainier S, Johnson LA, Dobry CJ, Ping AJ, Grundy PE, Feinberg AP. Relaxation of imprinted genes in human cancer. Nature. 362: 747-9. PMID 8385745 DOI: 10.1038/362747a0  0.348
1987 Feinberg AP, Vogelstein B. Alterations in DNA methylation in human colon neoplasia. Seminars in Surgical Oncology. 3: 149-51. PMID 3659719 DOI: 10.1002/Ssu.2980030304  0.519
1986 Trent J, Meltzer P, Rosenblum M, Harsh G, Kinzler K, Mashal R, Feinberg A, Vogelstein B. Evidence for rearrangement, amplification, and expression of c-myc in a human glioblastoma Proceedings of the National Academy of Sciences of the United States of America. 83: 470-473. PMID 3001737 DOI: 10.1073/Pnas.83.2.470  0.526
1985 Fearon ER, Feinberg AP, Hamilton SH, Vogelstein B. Loss of genes on the short arm of chromosome 11 in bladder cancer. Nature. 318: 377-80. PMID 2999610 DOI: 10.1038/318377A0  0.442
1985 Vogelstein B, Fearon ER, Hamilton SR, Feinberg AP. Use of restriction fragment length polymorphisms to determine the clonal origin of human tumors. Science (New York, N.Y.). 227: 642-5. PMID 2982210 DOI: 10.1126/Science.2982210  0.492
1985 Goelz SE, Vogelstein B, Hamilton SR, Feinberg AP. Hypomethylation of DNA from benign and malignant human colon neoplasms. Science (New York, N.Y.). 228: 187-90. PMID 2579435 DOI: 10.1126/Science.2579435  0.472
1984 Feinberg AP, Vogelstein B. "A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity". Addendum. Analytical Biochemistry. 137: 266-7. PMID 6329026 DOI: 10.1016/0003-2697(84)90381-6  0.366
1984 Fearon ER, Vogelstein B, Feinberg AP. Somatic deletion and duplication of genes on chromosome 11 in Wilms' tumours. Nature. 309: 176-8. PMID 6325939 DOI: 10.1038/309176A0  0.433
1983 Feinberg AP, Vogelstein B, Droller MJ, Baylin SB, Nelkin BD. Mutation affecting the 12th amino acid of the c-Ha-ras oncogene product occurs infrequently in human cancer. Science (New York, N.Y.). 220: 1175-7. PMID 6304875 DOI: 10.1126/Science.6304875  0.391
1983 Feinberg AP, Vogelstein B. Hypomethylation distinguishes genes of some human cancers from their normal counterparts. Nature. 301: 89-92. PMID 6185846 DOI: 10.1038/301089A0  0.537
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