Peter Andolfatto - Related publications

Princeton University, Princeton, NJ 
Population genetics, Genomics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Monroe JG, McKay JK, Weigel D, Flood PJ. The population genomics of adaptive loss of function. Heredity. PMID 33574599 DOI: 10.1038/s41437-021-00403-2   
2021 Schield DR, Scordato ESC, Smith CCR, Carter JK, Cherkaoui SI, Gombobaatar S, Hajib S, Hanane S, Hund AK, Koyama K, Liang W, Liu Y, Magri N, Rubtsov A, Sheta B, et al. Sex-linked genetic diversity and differentiation in a globally distributed avian species complex. Molecular Ecology. PMID 33720472 DOI: 10.1111/mec.15885   
2021 Noble LM, Rockman MV, Teotónio H. Gene-level quantitative trait mapping in Caenorhabditis elegans. G3 (Bethesda, Md.). 11. PMID 33693602 DOI: 10.1093/g3journal/jkaa061   
2021 Lee D, Zdraljevic S, Stevens L, Wang Y, Tanny RE, Crombie TA, Cook DE, Webster AK, Chirakar R, Baugh LR, Sterken MG, Braendle C, Félix MA, Rockman MV, Andersen EC. Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans. Nature Ecology & Evolution. PMID 33820969 DOI: 10.1038/s41559-021-01435-x   
2021 Lim MCW, Bi K, Witt CC, Graham CH, Dávalos LM. Pervasive genomic signatures of local adaptation to altitude across highland specialist Andean hummingbird populations. The Journal of Heredity. PMID 33631009 DOI: 10.1093/jhered/esab008   
2021 von Takach B, Penton CE, Murphy BP, Radford IJ, Davies HF, Hill BM, Banks SC. Population genomics and conservation management of a declining tropical rodent. Heredity. PMID 33664461 DOI: 10.1038/s41437-021-00418-9   
2021 Kawecki TJ, Erkosar B, Dupuis C, Hollis B, Stillwell RC, Kapun M. The genomic architecture of adaptation to larval malnutrition points to a trade-off with adult starvation resistance in Drosophila. Molecular Biology and Evolution. PMID 33677563 DOI: 10.1093/molbev/msab061   
2021 Bassitta M, Brown RP, Pérez-Cembranos A, Pérez-Mellado V, Castro JA, Picornell A, Ramon C. Genomic signatures of drift and selection driven by predation and human pressure in an insular lizard. Scientific Reports. 11: 6136. PMID 33731784 DOI: 10.1038/s41598-021-85591-x   
2021 Palacio-Mejía JD, Grabowski PP, Ortiz EM, Silva-Arias GA, Haque T, Des Marais DL, Bonnette J, Lowry DB, Juenger TE. Geographic patterns of genomic diversity and structure in the C grass across its natural distribution. Aob Plants. 13: plab002. PMID 33708370 DOI: 10.1093/aobpla/plab002   
2021 Duan G, Bao J, Chen X, Xie J, Liu Y, Chen H, Zheng H, Tang W, Wang Z. Large-Scale Genome Scanning within Exonic Regions Revealed the Contributions of Selective Sweep Prone Genes to Host Divergence and Adaptation in Species Complex. Microorganisms. 9. PMID 33803140 DOI: 10.3390/microorganisms9030562   
2021 Rodger YS, Pavlova A, Sinclair S, Pickup M, Sunnucks P. Evolutionary history and genetic connectivity across highly fragmented populations of an endangered daisy. Heredity. PMID 33608651 DOI: 10.1038/s41437-021-00413-0   
2021 Reid JM, Arcese P, Nietlisbach P, Wolak ME, Muff S, Dickel L, Keller LF. Immigration counter-acts local micro-evolution of a major fitness component: Migration-selection balance in free-living song sparrows. Evolution Letters. 5: 48-60. PMID 33552535 DOI: 10.1002/evl3.214   
2021 Benestan LM, Rougemont Q, Senay C, Normandeau E, Parent E, Rideout R, Bernatchez L, Lambert Y, Audet C, Parent GJ. Population genomics and history of speciation reveal fishery management gaps in two related redfish species (and ). Evolutionary Applications. 14: 588-606. PMID 33664797 DOI: 10.1111/eva.13143   
2021 McFarlane SE, Senn HV, Smith SL, Pemberton JM. Locus-specific introgression in young hybrid swarms: drift may dominate selection. Molecular Ecology. PMID 33638185 DOI: 10.1111/mec.15862   
2021 Booker TR, Yeaman S, Whitlock MC. Global adaptation complicates the interpretation of genome scans for local adaptation. Evolution Letters. 5: 4-15. PMID 33552532 DOI: 10.1002/evl3.208   
2021 Han DY, Han PJ, Rumbold K, Koricha AD, Duan SF, Song L, Shi JY, Li K, Wang QM, Bai FY. Adaptive Gene Content and Allele Distribution Variations in the Wild and Domesticated Populations of . Frontiers in Microbiology. 12: 631250. PMID 33679656 DOI: 10.3389/fmicb.2021.631250   
2021 Feiner N, Brun-Usan M, Uller T. Evolvability and evolutionary rescue. Evolution & Development. e12374. PMID 33528902 DOI: 10.1111/ede.12374   
2021 Cayuela H, Dorant Y, Mérot C, Laporte M, Normandeau E, Gagnon-Harvey S, Clément M, Sirois P, Bernatchez L. Thermal adaptation rather than demographic history drives genetic structure inferred by copy number variants in a marine fish. Molecular Ecology. PMID 33565147 DOI: 10.1111/mec.15835   
2021 Reynes L, Thibaut T, Mauger S, Blanfuné A, Holon F, Cruaud C, Couloux A, Valero M, Aurelle D. Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii. Molecular Ecology. PMID 33629449 DOI: 10.1111/mec.15860   
2021 Inoue K, Sietman BE, McMurray SE, Faiman JS, Zanatta DT. New microsatellite markers for Ellipse, Venustaconcha ellipsiformis (Bivalvia: Unionidae), with notes on optimal sample size and cross-species amplification. Molecular Biology Reports. PMID 33770294 DOI: 10.1007/s11033-021-06292-2   
2021 Yue L, Cao LJ, Chen JC, Gong YJ, Lin YH, Hoffmann AA, Wei SJ. Low levels of genetic differentiation with isolation by geography and environment in populations of Drosophila melanogaster from across China. Heredity. PMID 33686193 DOI: 10.1038/s41437-021-00419-8   
2021 Flanagan SP, Rose E, Jones AG. The population genomics of repeated freshwater colonizations by Gulf pipefish. Molecular Ecology. PMID 33580570 DOI: 10.1111/mec.15841   
2021 Wang Y, Ferveur JF, Moussian B. Eco-genetics of desiccation resistance in Drosophila. Biological Reviews of the Cambridge Philosophical Society. PMID 33754475 DOI: 10.1111/brv.12709   
2021 Park S, Kumar P, Shi A, Mou B. Population genetics and genome-wide association studies provide insights into the influence of selective breeding on genetic variation in lettuce. The Plant Genome. e20086. PMID 33629537 DOI: 10.1002/tpg2.20086   
2021 Willis K, Burt A. Double drives and private alleles for localised population genetic control. Plos Genetics. 17: e1009333. PMID 33755671 DOI: 10.1371/journal.pgen.1009333   
2021 Van Belleghem SM, Lewis JJ, Rivera ES, Papa R. Heliconius butterflies: a window into the evolution and development of diversity. Current Opinion in Genetics & Development. 69: 72-81. PMID 33714874 DOI: 10.1016/j.gde.2021.01.010   
2021 Bowers JE, Paterson AH. Chromosome number is key to longevity of polyploid lineages. The New Phytologist. PMID 33772797 DOI: 10.1111/nph.17361   
2021 Barr K, Beichman AC, Kalhori P, Rajbhandary J, Bay RA, Ruegg K, Smith TB. Persistent panmixia despite extreme habitat loss and population decline in the threatened tricolored blackbird (). Evolutionary Applications. 14: 674-684. PMID 33767743 DOI: 10.1111/eva.13147   
2021 Meucci S, Schulte L, Zimmermann HH, Stoof-Leichsenring KR, Epp L, Bronken Eidesen P, Herzschuh U. Holocene chloroplast genetic variation of shrubs (, , sp.) at the siberian tundra-taiga ecotone inferred from modern chloroplast genome assembly and sedimentary ancient DNA analyses. Ecology and Evolution. 11: 2173-2193. PMID 33717447 DOI: 10.1002/ece3.7183   
2021 Trucchi E, Benazzo A, Lari M, Iob A, Vai S, Nanni L, Bellucci E, Bitocchi E, Raffini F, Xu C, Jackson SA, Lema V, Babot P, Oliszewski N, Gil A, et al. Ancient genomes reveal early Andean farmers selected common beans while preserving diversity. Nature Plants. PMID 33558754 DOI: 10.1038/s41477-021-00848-7   
2021 Zeng J, Xue A, Jiang L, Lloyd-Jones LR, Wu Y, Wang H, Zheng Z, Yengo L, Kemper KE, Goddard ME, Wray NR, Visscher PM, Yang J. Widespread signatures of natural selection across human complex traits and functional genomic categories. Nature Communications. 12: 1164. PMID 33608517 DOI: 10.1038/s41467-021-21446-3   
2021 Olofsson JK, Curran EV, Nyirenda F, Bianconi ME, Dunning LT, Milenkovic V, Sotelo G, Hidalgo O, Powell RF, Lundgren MR, Leitch IJ, Nosil P, Osborne CP, Christin PA. Low dispersal and ploidy differences in a grass maintain photosynthetic diversity despite gene flow and habitat overlap. Molecular Ecology. PMID 33682242 DOI: 10.1111/mec.15871   
2021 de Jong M, Lovatt F, Hoelzel AR. Detecting genetic signals of selection in heavily bottlenecked reindeer populations by comparing parallel founder events. Molecular Ecology. PMID 33565631 DOI: 10.1111/mec.15837   
2021 Weller CA, Tilk S, Rajpurohit S, Bergland AO. Accurate, ultra-low coverage genome reconstruction and association studies in Hybrid Swarm mapping populations. G3 (Bethesda, Md.). PMID 33677482 DOI: 10.1093/g3journal/jkab062   
2021 Warren WC, Boggs TE, Borowsky R, Carlson BM, Ferrufino E, Gross JB, Hillier L, Hu Z, Keene AC, Kenzior A, Kowalko JE, Tomlinson C, Kremitzki M, Lemieux ME, Graves-Lindsay T, et al. A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution. Nature Communications. 12: 1447. PMID 33664263 DOI: 10.1038/s41467-021-21733-z   
2021 Le Sage EH, Duncan SI, Seaborn T, Cundiff J, Rissler LJ, Crespi EJ. Ecological adaptation drives wood frog population divergence in life history traits. Heredity. PMID 33536638 DOI: 10.1038/s41437-021-00409-w   
2021 Gompert Z. A population-genomic approach for estimating selection on polygenic traits in heterogeneous environments. Molecular Ecology Resources. PMID 33682340 DOI: 10.1111/1755-0998.13371   
2021 Shi H, Gazal S, Kanai M, Koch EM, Schoech AP, Siewert KM, Kim SS, Luo Y, Amariuta T, Huang H, Okada Y, Raychaudhuri S, Sunyaev SR, Price AL. Population-specific causal disease effect sizes in functionally important regions impacted by selection. Nature Communications. 12: 1098. PMID 33597505 DOI: 10.1038/s41467-021-21286-1   
2021 Oliveira DR, Reid BN, Fitzpatrick SW. Genome-wide diversity and habitat underlie fine-scale phenotypic differentiation in the rainbow darter (). Evolutionary Applications. 14: 498-512. PMID 33664790 DOI: 10.1111/eva.13135   
2021 Boitard S, Paris C, Sevane N, Servin B, Bazi-Kabbaj K, Dunner S. Gene Banks as Reservoirs to Detect Recent Selection: The Example of the Asturiana de los Valles Bovine Breed. Frontiers in Genetics. 12: 575405. PMID 33633776 DOI: 10.3389/fgene.2021.575405   
2021 Yair S, Lee KM, Coop G. The timing of human adaptation from Neanderthal introgression. Genetics. PMID 33787889 DOI: 10.1093/genetics/iyab052   
2021 Goodall J, Westfall KM, Magnúsdóttir H, Pálsson S, Örnólfsdóttir EB, Jónsson ZO. RAD sequencing of common whelk, reveals fine-scale population structuring in Europe and cryptic speciation within the North Atlantic. Ecology and Evolution. 11: 2616-2629. PMID 33767824 DOI: 10.1002/ece3.7219   
2021 Teixeira JC, Huber CD. The inflated significance of neutral genetic diversity in conservation genetics. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33608481 DOI: 10.1073/pnas.2015096118   
2021 Hartmann FE, Ament-Velásquez SL, Vogan AA, Gautier V, Le Prieur S, Berramdane M, Snirc A, Johannesson H, Grognet P, Malagnac F, Silar P, Giraud T. Size variation of the non-recombining region on the mating-type chromosomes in the fungal Podospora anserina species complex. Molecular Biology and Evolution. PMID 33555341 DOI: 10.1093/molbev/msab040   
2021 Taki Y, Vincenot CE, Sato Y, Inoue-Murayama M. Genetic diversity and population structure in the Ryukyu flying fox inferred from remote sampling in the Yaeyama archipelago. Plos One. 16: e0248672. PMID 33735322 DOI: 10.1371/journal.pone.0248672   
2021 Thia JA, McGuigan K, Liggins L, Figueira WF, Bird CE, Mather A, Evans JL, Riginos C. Genetic and phenotypic variation exhibit both predictable and stochastic patterns across an intertidal fish metapopulation. Molecular Ecology. PMID 33544414 DOI: 10.1111/mec.15829   
2021 Bozdag GO, Ono J, Denton JA, Karakoc E, Hunter N, Leu JY, Greig D. Breaking a species barrier by enabling hybrid recombination. Current Biology : Cb. 31: R180-R181. PMID 33621502 DOI: 10.1016/j.cub.2020.12.038   
2021 Johri P, Riall K, Becher H, Excoffier L, Charlesworth B, Jensen JD. The impact of purifying and background selection on the inference of population history: problems and prospects. Molecular Biology and Evolution. PMID 33591322 DOI: 10.1093/molbev/msab050   
2021 Svedberg J, Shchur V, Reinman S, Nielsen R, Corbett-Detig R. Inferring Adaptive Introgression Using Hidden Markov Models. Molecular Biology and Evolution. PMID 33502512 DOI: 10.1093/molbev/msab014   
2021 Meng X, Liu T, Zhang L, Jin L, Sun K, Feng J. Effects of Colonization, Geography and Environment on Genetic Divergence in the Intermediate Leaf-Nosed Bat, . Animals : An Open Access Journal From Mdpi. 11. PMID 33800251 DOI: 10.3390/ani11030733