Hodaka Fujii - Publications

Affiliations: 
Basic Medical Science New York University, New York, NY, United States 
Area:
Immunology, Molecular Biology, Pathology

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Husain A, Xu J, Fujii H, Nakata M, Kobayashi M, Wang JY, Rehwinkel J, Honjo T, Begum NA. SAMHD1-mediated dNTP degradation is required for efficient DNA repair during antibody class switch recombination. The Embo Journal. e102931. PMID 32511795 DOI: 10.15252/Embj.2019102931  0.347
2020 Nasrallah R, Imianowski CJ, Bossini-Castillo L, Grant FM, Dogan M, Placek L, Kozhaya L, Kuo P, Sadiyah F, Whiteside SK, Mumbach MR, Glinos D, Vardaka P, Whyte CE, Lozano T, ... ... Fujii H, et al. A distal enhancer at risk locus 11q13.5 promotes suppression of colitis by T cells. Nature. PMID 32499651 DOI: 10.1038/S41586-020-2296-7  0.408
2019 Fujita T, Fujii H. Purification of specific DNA species using the CRISPR system. Biology Methods & Protocols. 4: bpz008. PMID 32395626 DOI: 10.1093/Biomethods/Bpz008  0.325
2019 Kitaura F, Yuno M, Fujita T, Wakana S, Ueda J, Yamagata K, Fujii H. Normal B cell development and Pax5 expression in Thy28/ThyN1-deficient mice. Plos One. 14: e0220199. PMID 31329649 DOI: 10.1371/Journal.Pone.0220199  0.352
2018 Fujita T, Yuno M, Fujii H. An enChIP system for the analysis of bacterial genome functions. Bmc Research Notes. 11: 387. PMID 29898790 DOI: 10.1186/S13104-018-3486-3  0.31
2018 Fujita T, Yuno M, Kitaura F, Fujii H. Detection of genome-edited cells by oligoribonucleotide interference-PCR. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 29718217 DOI: 10.1093/Dnares/Dsy012  0.322
2018 Hamidian A, Vaapil M, von Stedingk K, Fujita T, Persson CU, Eriksson P, Veerla S, De Preter K, Speleman F, Fujii H, Påhlman S, Mohlin S. Promoter-associated proteins of EPAS1 identified by enChIP-MS - A putative role of HDX as a negative regulator. Biochemical and Biophysical Research Communications. PMID 29577908 DOI: 10.1016/J.Bbrc.2018.03.150  0.379
2018 Fujita T, Yuno M, Fujii H. enChIP systems using different CRISPR orthologues and epitope tags. Bmc Research Notes. 11: 154. PMID 29482606 DOI: 10.1186/S13104-018-3262-4  0.308
2018 Fujita T, Kitaura F, Oji A, Tanigawa N, Yuno M, Ikawa M, Taniuchi I, Fujii H. Transgenic mouse lines expressing the 3xFLAG-dCas9 protein for enChIP analysis. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 29480524 DOI: 10.1111/Gtc.12573  0.377
2017 Fujita T, Kitaura F, Yuno M, Suzuki Y, Sugano S, Fujii H. Locus-specific ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5 promoter in a chicken B cell line. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 28586432 DOI: 10.1093/Dnares/Dsx023  0.342
2017 Fujita T, Yuno M, Suzuki Y, Sugano S, Fujii H. Identification of physical interactions between genomic regions by enChIP-Seq. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 28474362 DOI: 10.1111/Gtc.12492  0.336
2016 Fujita T, Fujii H. Isolation of Specific Genomic Regions and Identification of Associated Molecules by enChIP. Journal of Visualized Experiments : Jove. e53478. PMID 26862718 DOI: 10.3791/53478  0.344
2016 Fujita T, Yuno M, Fujii H. Efficient sequence-specific isolation of DNA fragments and chromatin by in vitro enChIP technology using recombinant CRISPR ribonucleoproteins. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 21: 370-7. PMID 26848818 DOI: 10.1111/Gtc.12341  0.33
2016 Fujita T, Fujii H. Biochemical Analysis of Genome Functions Using Locus-Specific Chromatin Immunoprecipitation Technologies. Gene Regulation and Systems Biology. 10: 1-9. PMID 26819551 DOI: 10.4137/Grsb.S32520  0.357
2015 Fujita T, Fujii H. Applications of Engineered DNA-Binding Molecules Such as TAL Proteins and the CRISPR/Cas System in Biology Research. International Journal of Molecular Sciences. 16: 23143-64. PMID 26404236 DOI: 10.3390/Ijms161023143  0.348
2015 Fujii H, Fujita T. Isolation of Specific Genomic Regions and Identification of Their Associated Molecules by Engineered DNA-Binding Molecule-Mediated Chromatin Immunoprecipitation (enChIP) Using the CRISPR System and TAL Proteins. International Journal of Molecular Sciences. 16: 21802-12. PMID 26370991 DOI: 10.3390/Ijms160921802  0.355
2015 Fujita T, Fujii H. Isolation of specific genomic regions and identification of associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR. Methods in Molecular Biology (Clifton, N.J.). 1288: 43-52. PMID 25827874 DOI: 10.1007/978-1-4939-2474-5_4  0.324
2015 Fujita T, Kitaura F, Fujii H. A critical role of the Thy28-MYH9 axis in B cell-specific expression of the Pax5 gene in chicken B cells. Plos One. 10: e0116579. PMID 25607658 DOI: 10.1371/Journal.Pone.0116579  0.39
2014 Fujita T, Fujii H. Efficient isolation of specific genomic regions retaining molecular interactions by the iChIP system using recombinant exogenous DNA-binding proteins. Bmc Molecular Biology. 15: 26. PMID 25428274 DOI: 10.1186/S12867-014-0026-0  0.387
2014 Fujita T, Fujii H. Identification of proteins associated with an IFNγ-responsive promoter by a retroviral expression system for enChIP using CRISPR. Plos One. 9: e103084. PMID 25051498 DOI: 10.1371/Journal.Pone.0103084  0.428
2013 Fujita T, Fujii H. Locus-specific biochemical epigenetics/chromatin biochemistry by insertional chromatin immunoprecipitation. Isrn Biochemistry. 2013: 913273. PMID 25969763 DOI: 10.1155/2013/913273  0.334
2013 Fujita T, Asano Y, Ohtsuka J, Takada Y, Saito K, Ohki R, Fujii H. Identification of telomere-associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP). Scientific Reports. 3: 3171. PMID 24201379 DOI: 10.1038/Srep03171  0.364
2013 Fujita T, Fujii H. Efficient isolation of specific genomic regions and identification of associated proteins by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR. Biochemical and Biophysical Research Communications. 439: 132-6. PMID 23942116 DOI: 10.1016/J.Bbrc.2013.08.013  0.34
2013 Edwards JP, Fujii H, Zhou AX, Creemers J, Unutmaz D, Shevach EM. Regulation of the expression of GARP/latent TGF-β1 complexes on mouse T cells and their role in regulatory T cell and Th17 differentiation. Journal of Immunology (Baltimore, Md. : 1950). 190: 5506-15. PMID 23645881 DOI: 10.4049/Jimmunol.1300199  0.356
2013 Zhou AX, Kozhaya L, Fujii H, Unutmaz D. GARP-TGF-β complexes negatively regulate regulatory T cell development and maintenance of peripheral CD4+ T cells in vivo. Journal of Immunology (Baltimore, Md. : 1950). 190: 5057-64. PMID 23576681 DOI: 10.4049/Jimmunol.1300065  0.427
2013 Fujita T, Fujii H. Locus-specific biochemical epigenetics/chromatin biochemistry by insertional chromatin immnoprecipitation (iChIP) Epigenetics & Chromatin. 6. DOI: 10.1186/1756-8935-6-S1-P20  0.401
2012 Fujita T, Fujii H. Transcription start sites and usage of the first exon of mouse Foxp3 gene. Molecular Biology Reports. 39: 9613-9. PMID 22723000 DOI: 10.1007/S11033-012-1825-3  0.311
2012 Juliana FM, Nara H, Onoda T, Rahman M, Araki A, Jin L, Fujii H, Tanaka N, Hoshino T, Asao H. Apurinic/apyrimidinic endonuclease1/redox factor-1 (Ape1/Ref-1) is essential for IL-21-induced signal transduction through ERK1/2 pathway. Biochemical and Biophysical Research Communications. 420: 628-34. PMID 22450323 DOI: 10.1016/J.Bbrc.2012.03.051  0.421
2012 Fujita T, Fujii H. Efficient isolation of specific genomic regions by insertional chromatin immunoprecipitation (iChIP) with a second-generation tagged LexA DNA-binding domain Advances in Bioscience and Biotechnology. 3: 626-629. DOI: 10.4236/Abb.2012.35081  0.355
2011 Fujita T, Fujii H. Direct identification of insulator components by insertional chromatin immunoprecipitation. Plos One. 6: e26109. PMID 22043306 DOI: 10.1371/Journal.Pone.0026109  0.355
2009 Hoshino A, Fujii H. Insertional chromatin immunoprecipitation: A method for isolating specific genomic regions Journal of Bioscience and Bioengineering. 108: 446-449. PMID 19804873 DOI: 10.1016/J.Jbiosc.2009.05.005  0.311
2009 Fujii H. Novel reporter cell line to analyze cytokine-mediated expression regulation of c-myc gene. Journal of Bioscience and Bioengineering. 108: 438-40. PMID 19804871 DOI: 10.1016/J.Jbiosc.2009.04.022  0.402
2009 Wang R, Kozhaya L, Mercer F, Khaitan A, Fujii H, Unutmaz D. Expression of GARP selectively identifies activated human FOXP3+ regulatory T cells. Proceedings of the National Academy of Sciences of the United States of America. 106: 13439-44. PMID 19666573 DOI: 10.1073/Pnas.0901965106  0.426
2009 Saint Fleur S, Hoshino A, Kondo K, Egawa T, Fujii H. Regulation of Fas-mediated immune homeostasis by an activation-induced protein, Cyclon. Blood. 114: 1355-65. PMID 19528538 DOI: 10.1182/Blood-2008-11-189118  0.621
2009 Fujii H, Hoshino A. Lack of nuclear translocation of cytoplasmic domains of IL-2/IL-15 receptor subunits Cytokine. 46: 302-308. PMID 19329337 DOI: 10.1016/J.Cyto.2009.02.014  0.371
2008 Wang R, Wan Q, Kozhaya L, Fujii H, Unutmaz D. Identification of a regulatory T cell specific cell surface molecule that mediates suppressive signals and induces Foxp3 expression. Plos One. 3: e2705. PMID 18628982 DOI: 10.1371/Journal.Pone.0002705  0.425
2008 Fujii H. Receptor expression is essential for proliferation induced by dimerized Jak kinases. Biochemical and Biophysical Research Communications. 370: 557-60. PMID 18381062 DOI: 10.1016/J.Bbrc.2008.03.095  0.385
2008 Saint Fleur S, Fujii H. Cytokine-induced nuclear translocation of signaling proteins and their analysis using the inducible translocation trap system. Cytokine. 41: 187-97. PMID 18203617 DOI: 10.1016/J.Cyto.2007.11.023  0.617
2007 Fujii H. Mechanisms of Signal Transduction from Receptors of Type I and Type II Cytokines. Journal of Immunotoxicology. 4: 69-76. PMID 18958714 DOI: 10.1080/15476910601154779  0.393
2007 Hoshino A, Fujii H. Nuclear translocation of 2-amino-3-ketobutyrate coenzyme A ligase by cold and osmotic stress Cell Stress and Chaperones. 12: 186-191. PMID 17688197 DOI: 10.1379/Csc-264R.1  0.315
2007 Hoshino A, Fujii H. Temporal regulation of Stat5 activity in determination of cell differentiation program Biochemical and Biophysical Research Communications. 358: 914-919. PMID 17511959 DOI: 10.1016/J.Bbrc.2007.05.018  0.389
2007 Hoshino A, Hirst JA, Fujii H. Regulation of cell proliferation by interleukin-3-induced nuclear translocation of pyruvate kinase Journal of Biological Chemistry. 282: 17706-17711. PMID 17446165 DOI: 10.1074/Jbc.M700094200  0.42
2007 Hoshino A, Fujii H. Redundant promoter elements mediate IL-3-induced expression of a novel cytokine-inducible gene, cyclon Febs Letters. 581: 975-980. PMID 17300783 DOI: 10.1016/J.Febslet.2007.01.083  0.415
2007 Fujii H. Cell type-specific roles of Jak3 in IL-2-induced proliferative signal transduction. Biochemical and Biophysical Research Communications. 354: 825-9. PMID 17266928 DOI: 10.1016/J.Bbrc.2007.01.067  0.418
2006 Hoshino A, Fleur SS, Fujii H. Regulation of Stat1 protein expression by phenylalanine 172 in the coiled-coil domain Biochemical and Biophysical Research Communications. 346: 1062-1066. PMID 16782051 DOI: 10.1016/J.Bbrc.2006.06.026  0.448
2004 Hoshino A, Matsumura S, Kondo K, Hirst JA, Fujii H. Inducible translocation trap: a system for detecting inducible nuclear translocation. Molecular Cell. 15: 153-9. PMID 15225556 DOI: 10.1016/J.Molcel.2004.06.017  0.474
2002 Tucker SN, Jessup HK, Fujii H, Wilson CB. Enforced expression of the Ikaros isoform IK5 decreases the numbers of extrathymic intraepithelial lymphocytes and natural killer 1.1+ T cells. Blood. 99: 513-9. PMID 11781232 DOI: 10.1182/blood.V99.2.513  0.319
2000 Tsujino S, Santo JPD, Takaoka A, McKernan TL, Noguchi S, Taya C, Yonekawa H, Saito T, Taniguchi T, Fujii H. Differential requirement of the cytoplasmic subregions of γc chain in T cell development and function Proceedings of the National Academy of Sciences of the United States of America. 97: 10514-10519. PMID 10962026 DOI: 10.1073/Pnas.180063297  0.408
1999 Tsujino S, Miyazaki T, Kawahara A, Maeda M, Taniguchi T, Fujii H. Critical role of the membrane-proximal, proline-rich motif of the interleukin-2 receptor gammac chain in the Jak3-independent signal transduction. Genes to Cells. 4: 363-373. PMID 10421845 DOI: 10.1046/J.1365-2443.1999.00266.X  0.358
1999 Takaoka A, Tanaka N, Mitani Y, Miyazaki T, Fujii H, Sato M, Kovarik P, Decker T, Schlessinger J, Taniguchi T. Protein tyrosine kinase Pyk2 mediates the Jak-dependent activation of MAPK and Stat1 in IFN-gamma, but not IFN-alpha, signaling. The Embo Journal. 18: 2480-8. PMID 10228162 DOI: 10.1093/Emboj/18.9.2480  0.347
1998 Fujii H, Ogasawara K, Otsuka H, Suzuki M, Yamamura KI, Yokochi T, Miyazaki T, Suzuki H, Mak TW, Taki S, Taniguchi T. Functional dissection of the cytoplasmic subregions of the IL-2 receptor βc chain in primary lymphocyte populations The Embo Journal. 17: 6551-6557. PMID 9822600 DOI: 10.1093/Emboj/17.22.6551  0.388
1998 Miyazaki T, Takaoka A, Nogueira L, Dikic I, Fujii H, Tsujino S, Mitani Y, Maeda M, Schlessinger J, Taniguchi T. Pyk2 is a downstream mediator of the IL-2 receptor-coupled Jak signaling pathway. Genes & Development. 12: 770-5. PMID 9512511 DOI: 10.1101/Gad.12.6.770  0.397
1995 Fujii H, Nakagawa Y, Schindler U, Kawahara A, Mori H, Gouilleux F, Groner B, Ihle JN, Minami Y, Miyazaki T, Taniguchi A. Activation of Stat5 by interleukin 2 requires a carboxyl-terminal region of the interleukin 2 receptor β chain but is not essential for the proliferative signal transmission Proceedings of the National Academy of Sciences of the United States of America. 92: 5482-5486. PMID 7777534 DOI: 10.1073/Pnas.92.12.5482  0.343
1995 Taniguchi T, Miyazaki T, Minami Y, Kawahara A, Fujii H, Nakagawa Y, Hatakeyama M, Liu ZJ. IL-2 signaling involves recruitment and activation of multiple protein tyrosine kinases by the IL-2 receptor. Annals of the New York Academy of Sciences. 766: 235-44. PMID 7486666 DOI: 10.1111/J.1749-6632.1995.Tb26671.X  0.328
1995 Kanno H, Morimoto M, Fujii H, Tsujimura T, Asai H, Noguchi T, Kitamura Y, Miwa S. Primary structure of murine red blood cell-type pyruvate kinase (PK) and molecular characterization of PK deficiency identified in the CBA strain Blood. 86: 3205-3210. DOI: 10.1182/Blood.V86.8.3205.3205  0.301
1994 Miyazaki T, Kawahara A, Fujii H, Nakagawa Y, Minami Y, Liu ZJ, Oishi I, Silvennoinen O, Witthuhn BA, Ihle JN, Taniguchi T. Functional activation of Jak1 and Jak3 by selective association with IL-2 receptor subunits Science. 266: 1045-1047. PMID 7973659 DOI: 10.1126/Science.7973659  0.307
1993 Tsutsumi A, Kubo M, Fujii H, Freire-Moar J, Turck CW, Ransom JT. Regulation of protein kinase C isoform proteins in phorbol ester-stimulated Jurkat T lymphoma cells. Journal of Immunology. 150: 1746-1754. DOI: 10.11501/3112098  0.387
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