| Year |
Citation |
Score |
| 2024 |
Peng Y, Song W, Teif VB, Ovcharenko I, Landsman D, Panchenko AR. Detection of new pioneer transcription factors as cell-type-specific nucleosome binders. Elife. 12. PMID 38293962 DOI: 10.7554/eLife.88936 |
0.317 |
|
| 2023 |
Peng Y, Song W, Teif VB, Ovcharenko I, Landsman D, Panchenko AR. Detection of new pioneer transcription factors as cell-type specific nucleosome binders. Biorxiv : the Preprint Server For Biology. PMID 37425841 DOI: 10.1101/2023.05.10.540098 |
0.315 |
|
| 2022 |
Seal RL, Denny P, Bruford EA, Gribkova AK, Landsman D, Marzluff WF, McAndrews M, Panchenko AR, Shaytan AK, Talbert PB. A standardized nomenclature for mammalian histone genes. Epigenetics & Chromatin. 15: 34. PMID 36180920 DOI: 10.1186/s13072-022-00467-2 |
0.327 |
|
| 2022 |
He B, Zhu I, Postnikov Y, Furusawa T, Jenkins L, Nanduri R, Bustin M, Landsman D. Multiple epigenetic factors co-localize with HMGN proteins in A-compartment chromatin. Epigenetics & Chromatin. 15: 23. PMID 35761366 DOI: 10.1186/s13072-022-00457-4 |
0.325 |
|
| 2021 |
Peng Y, Li S, Onufriev A, Landsman D, Panchenko AR. Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails. Nature Communications. 12: 5280. PMID 34489435 DOI: 10.1038/s41467-021-25568-6 |
0.318 |
|
| 2020 |
Pongor LS, Gross JM, Vera Alvarez R, Murai J, Jang SM, Zhang H, Redon C, Fu H, Huang SY, Thakur B, Baris A, Marino-Ramirez L, Landsman D, Aladjem MI, Pommier Y. BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks. Epigenetics & Chromatin. 13: 21. PMID 32321568 DOI: 10.1186/S13072-020-00343-X |
0.386 |
|
| 2020 |
Knoll ER, Zhu ZI, Sarkar D, Landsman D, Morse RH. Kin28 depletionincreases association of TFIID subunits Taf1 and Taf4 with promoters in Saccharomyces cerevisiae. Nucleic Acids Research. PMID 32182349 DOI: 10.1093/Nar/Gkaa165 |
0.362 |
|
| 2019 |
Kale S, Goncearenco A, Markov Y, Landsman D, Panchenko AR. Molecular recognition of nucleosomes by binding partners. Current Opinion in Structural Biology. 56: 164-170. PMID 30991239 DOI: 10.1016/J.Sbi.2019.03.010 |
0.431 |
|
| 2018 |
Knoll ER, Zhu ZI, Sarkar D, Landsman D, Morse RH. Role of the pre-initiation complex in Mediator recruitment and dynamics. Elife. 7. PMID 30540252 DOI: 10.7554/Elife.39633 |
0.378 |
|
| 2018 |
He B, Deng T, Zhu I, Furusawa T, Zhang S, Tang W, Postnikov Y, Ambs S, Li CC, Livak F, Landsman D, Bustin M. Binding of HMGN proteins to cell specific enhancers stabilizes cell identity. Nature Communications. 9: 5240. PMID 30532006 DOI: 10.1038/S41467-018-07687-9 |
0.416 |
|
| 2018 |
Vera Alvarez R, Pongor LS, Mariño-Ramírez L, Landsman D. TPMCalculator: one-step software to quantify mRNA abundance of genomic features. Bioinformatics (Oxford, England). PMID 30379987 DOI: 10.1093/Bioinformatics/Bty896 |
0.336 |
|
| 2018 |
Shaytan AK, Xiao H, Armeev GA, Gaykalova DA, Komarova GA, Wu C, Studitsky VM, Landsman D, Panchenko AR. Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID. Nature Protocols. PMID 30341436 DOI: 10.1038/S41596-018-0048-Z |
0.331 |
|
| 2018 |
Ciftci-Yilmaz S, Au WC, Mishra PK, Eisenstatt JR, Chang J, Dawson AR, Zhu I, Rahman M, Bilke S, Costanzo M, Baryshnikova A, Myers CL, Meltzer PS, Landsman D, Baker RE, et al. A Genome-Wide Screen Reveals a Role for the HIR Histone Chaperone Complex in Preventing Mislocalization of Budding Yeast CENP-A. Genetics. PMID 30012561 DOI: 10.1534/Genetics.118.301305 |
0.403 |
|
| 2018 |
Deng T, Zhu ZI, Zhang S, Leng F, Cherukuri S, Hansen L, Mariño-Ramírez L, Meshorer E, Landsman D, Bustin M. Correction for Deng et al., "HMGN1 Modulates Nucleosome Occupancy and DNase I Hypersensitivity at the CpG Island Promoters of Embryonic Stem Cells". Molecular and Cellular Biology. 38. PMID 29844108 DOI: 10.1128/Mcb.00185-18 |
0.708 |
|
| 2018 |
Salinero AC, Knoll ER, Zhu ZI, Landsman D, Curcio MJ, Morse RH. The Mediator co-activator complex regulates Ty1 retromobility by controlling the balance between Ty1i and Ty1 promoters. Plos Genetics. 14: e1007232. PMID 29462141 DOI: 10.1371/Journal.Pgen.1007232 |
0.373 |
|
| 2017 |
Xiao H, Wang F, Wisniewski J, Shaytan AK, Ghirlando R, FitzGerald PC, Huang Y, Wei D, Li S, Landsman D, Panchenko AR, Wu C. Molecular basis of CENP-C association with the CENP-A nucleosome at yeast centromeres. Genes & Development. PMID 29074736 DOI: 10.1101/Gad.304782.117 |
0.441 |
|
| 2017 |
Vera Alvarez R, Li S, Landsman D, Ovcharenko I. SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome. Bioinformatics (Oxford, England). PMID 28968739 DOI: 10.1093/Bioinformatics/Btx583 |
0.304 |
|
| 2017 |
Shaytan AK, Xiao H, Armeev GA, Wu C, Landsman D, Panchenko AR. Hydroxyl-radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning. Nucleic Acids Research. 45: 9229-9243. PMID 28934480 DOI: 10.1093/Nar/Gkx616 |
0.391 |
|
| 2017 |
El Kennani S, Adrait A, Shaytan AK, Khochbin S, Bruley C, Panchenko AR, Landsman D, Pflieger D, Govin J. MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones. Epigenetics & Chromatin. 10: 2. PMID 28096900 DOI: 10.1186/S13072-016-0109-X |
0.383 |
|
| 2016 |
Li S, Alvarez RV, Sharan R, Landsman D, Ovcharenko I. Quantifying deleterious effects of regulatory variants. Nucleic Acids Research. PMID 27980060 DOI: 10.1093/Nar/Gkw1263 |
0.421 |
|
| 2016 |
Acevedo-Luna N, Mariño-Ramírez L, Halbert A, Hansen U, Landsman D, Spouge JL. Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules. Bmc Bioinformatics. 17: 479. PMID 27871221 DOI: 10.1186/S12859-016-1354-5 |
0.415 |
|
| 2016 |
Duplat-Bermúdez L, Ruiz-Medrano R, Landsman D, Mariño-Ramírez L, Xoconostle-Cázares B. Dataset of Arabidopsis plants that overexpress FT driven by a meristem-specific KNAT1 promoter. Data in Brief. 8: 520-528. PMID 27366785 DOI: 10.1016/J.Dib.2016.06.002 |
0.368 |
|
| 2016 |
Duplat-Bermúdez L, Ruiz-Medrano R, Landsman D, Mariño-Ramírez L, Xoconostle-Cázares B. Transcriptomic analysis of Arabidopsis overexpressing flowering locus T driven by a meristem-specific promoter that induces early flowering. Gene. 587: 120-131. PMID 27154816 DOI: 10.1016/J.Gene.2016.04.060 |
0.306 |
|
| 2016 |
Gamez RM, Rodríguez F, Ramírez S, Gómez Y, Agarwala R, Landsman D, Mariño-Ramírez L. Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens PS006. Genome Announcements. 4. PMID 27151797 DOI: 10.1128/Genomea.00329-16 |
0.341 |
|
| 2016 |
Zhang S, Zhu I, Deng T, Furusawa T, Rochman M, Vacchio MS, Bosselut R, Yamane A, Casellas R, Landsman D, Bustin M. HMGN proteins modulate chromatin regulatory sites and gene expression during activation of naïve B cells. Nucleic Acids Research. PMID 27112571 DOI: 10.1093/Nar/Gkw323 |
0.421 |
|
| 2016 |
Draizen EJ, Shaytan AK, Mariño-Ramírez L, Talbert PB, Landsman D, Panchenko AR. HistoneDB 2.0: a histone database with variants--an integrated resource to explore histones and their variants. Database : the Journal of Biological Databases and Curation. 2016. PMID 26989147 DOI: 10.1093/Database/Baw014 |
0.473 |
|
| 2016 |
Bernal JF, Donado-Godoy P, Arévalo A, Duarte C, Realpe ME, Díaz PL, Gómez Y, Rodríguez F, Agarwala R, Landsman D, Mariño-Ramírez L. Whole-Genome Sequence of Multidrug-Resistant Campylobacter coli Strain COL B1-266, Isolated from the Colombian Poultry Chain. Genome Announcements. 4. PMID 26988047 DOI: 10.1128/Genomea.00130-16 |
0.312 |
|
| 2016 |
Zhang S, Zhu I, Deng T, Furusawa T, Landsman D, Bustin M. Abstract A23: High mobility group N proteins modulate chromatin regulatory sites and gene expression during LPS-induced B-cell activation Cancer Research. 76. DOI: 10.1158/1538-7445.Chromepi15-A23 |
0.416 |
|
| 2016 |
Draizen EJ, Shaytan AK, Mariño-Ramírez L, Talbert PB, Landsman D, Panchenko AR. HistoneDB 2.0: A histone database with variants - An integrated resource to explore histones and their variants Database. 2016. DOI: 10.1093/database/baw014 |
0.373 |
|
| 2016 |
Shaytan AK, Armeev GA, Goncearenco A, Zhurkin VB, Landsman D, Panchenko AR. Nucleosome Dynamics at Microsecond Timescale: DNA-Protein Interactions, Water-Mediated Interactions and Nucleosome Formation Biophysical Journal. 110: 405. DOI: 10.1016/J.Bpj.2015.11.2189 |
0.426 |
|
| 2015 |
Shaytan AK, Armeev GA, Goncearenco A, Zhurkin VB, Landsman D, Panchenko AR. Coupling between histone conformations and DNA geometry in nucleosomes on a microsecond timescale: atomistic insights into nucleosome functions. Journal of Molecular Biology. PMID 26699921 DOI: 10.1016/J.Jmb.2015.12.004 |
0.425 |
|
| 2015 |
Gamez RM, Rodríguez F, Bernal JF, Agarwala R, Landsman D, Mariño-Ramírez L. Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Bacillus amyloliquefaciens BS006. Genome Announcements. 3. PMID 26607897 DOI: 10.1128/Genomea.01391-15 |
0.34 |
|
| 2015 |
Deng T, Zhu ZI, Zhang S, Postnikov Y, Huang D, Horrsch M, Furusawa T, Beckers J, Rozman J, Klingenspor M, Amarie O, Graw J, Rathkolb B, Wolf E, Adler T, ... ... Landsman D, et al. Functional compensation among HMGN variants modulates the DNase I hypersensitive sites at enhancers. Genome Research. PMID 26156321 DOI: 10.1101/Gr.192229.115 |
0.47 |
|
| 2015 |
Shaytan AK, Armeev GA, Goncearenco A, Zhurkin VB, Landsman D, Panchenko AR. 6 Combined influence of linker DNA and histone tails on nucleosome dynamics as revealed by microsecond molecular dynamics simulations. Journal of Biomolecular Structure & Dynamics. 33: 3. PMID 26103217 DOI: 10.1080/07391102.2015.1032630 |
0.326 |
|
| 2015 |
Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N, O'Donovan C, Pruitt KD, Rawlings ND, Saier M, Sowdhamini R, et al. Key challenges for the creation and maintenance of specialist protein resources. Proteins. 83: 1005-13. PMID 25820941 DOI: 10.1002/Prot.24803 |
0.322 |
|
| 2015 |
Shaytan AK, Landsman D, Panchenko AR. Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers. Current Opinion in Structural Biology. 32: 48-57. PMID 25731851 DOI: 10.1016/J.Sbi.2015.02.004 |
0.428 |
|
| 2015 |
Paul E, Zhu ZI, Landsman D, Morse RH. Genome-wide association of mediator and RNA polymerase II in wild-type and mediator mutant yeast. Molecular and Cellular Biology. 35: 331-42. PMID 25368384 DOI: 10.1128/Mcb.00991-14 |
0.421 |
|
| 2015 |
Shaytan AK, Armeev GA, Zhurkin VB, Landsman D, Panchenko AR. Polymorphism of Histone Tail Interactions in Nucleosome Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.431 |
0.433 |
|
| 2014 |
Yu W, McIntosh C, Lister R, Zhu I, Han Y, Ren J, Landsman D, Lee E, Briones V, Terashima M, Leighty R, Ecker JR, Muegge K. Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways. Genome Research. 24: 1613-23. PMID 25170028 DOI: 10.1101/Gr.172015.114 |
0.43 |
|
| 2013 |
Enciso-Rodríguez FE, González C, Rodríguez EA, López CE, Landsman D, Barrero LS, Mariño-Ramírez L. Identification of immunity related genes to study the Physalis peruviana--Fusarium oxysporum pathosystem. Plos One. 8: e68500. PMID 23844210 DOI: 10.1371/Journal.Pone.0068500 |
0.327 |
|
| 2013 |
Deng T, Zhu ZI, Zhang S, Leng F, Cherukuri S, Hansen L, Mariño-Ramírez L, Meshorer E, Landsman D, Bustin M. HMGN1 modulates nucleosome occupancy and DNase I hypersensitivity at the CpG island promoters of embryonic stem cells. Molecular and Cellular Biology. 33: 3377-89. PMID 23775126 DOI: 10.1128/Mcb.00435-13 |
0.757 |
|
| 2012 |
Hansen L, Mariño-Ramírez L, Landsman D. Differences in local genomic context of bound and unbound motifs. Gene. 506: 125-34. PMID 22692006 DOI: 10.1016/J.Gene.2012.06.005 |
0.765 |
|
| 2012 |
Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, ... ... Landsman D, et al. A unified phylogeny-based nomenclature for histone variants. Epigenetics & Chromatin. 5: 7. PMID 22650316 DOI: 10.1186/1756-8935-5-7 |
0.392 |
|
| 2012 |
Garzón-Martínez GA, Zhu ZI, Landsman D, Barrero LS, Mariño-Ramírez L. The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction. Bmc Genomics. 13: 151. PMID 22533342 DOI: 10.1186/1471-2164-13-151 |
0.332 |
|
| 2011 |
Hansen L, Kim NK, Mariño-Ramírez L, Landsman D. Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae. Plos One. 6: e29711. PMID 22242140 DOI: 10.1371/Journal.Pone.0029711 |
0.745 |
|
| 2011 |
Mariño-Ramírez L, Levine KM, Morales M, Zhang S, Moreland RT, Baxevanis AD, Landsman D. The Histone Database: an integrated resource for histones and histone fold-containing proteins. Database : the Journal of Biological Databases and Curation. 2011: bar048. PMID 22025671 DOI: 10.1093/database/bar048 |
0.337 |
|
| 2011 |
González-Pérez M, Murcia MI, Landsman D, Jordan IK, Mariño-Ramírez L. Genome sequence of the Mycobacterium colombiense type strain, CECT 3035. Journal of Bacteriology. 193: 5866-7. PMID 21952541 DOI: 10.1128/Jb.05928-11 |
0.32 |
|
| 2011 |
Rochman M, Taher L, Kurahashi T, Cherukuri S, Uversky VN, Landsman D, Ovcharenko I, Bustin M. Effects of HMGN variants on the cellular transcription profile. Nucleic Acids Research. 39: 4076-87. PMID 21278158 DOI: 10.1093/Nar/Gkq1343 |
0.324 |
|
| 2010 |
Hansen L, Mariño-Ramírez L, Landsman D. Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome. Nucleic Acids Research. 38: 1772-9. PMID 20047965 DOI: 10.1093/Nar/Gkp1195 |
0.765 |
|
| 2009 |
Huda A, Mariño-Ramírez L, Landsman D, Jordan IK. Repetitive DNA elements, nucleosome binding and human gene expression. Gene. 436: 12-22. PMID 19393174 DOI: 10.1016/J.Gene.2009.01.013 |
0.483 |
|
| 2009 |
Mariño-Ramírez L, Tharakaraman K, Bodenreider O, Spouge J, Landsman D. Identification of cis-regulatory elements in gene co-expression networks using A-GLAM. Methods in Molecular Biology (Clifton, N.J.). 541: 1-22. PMID 19381547 DOI: 10.1007/978-1-59745-243-4_1 |
0.329 |
|
| 2009 |
Mariño-Ramírez L, Tharakaraman K, Spouge JL, Landsman D. Promoter analysis: gene regulatory motif identification with A-GLAM. Methods in Molecular Biology (Clifton, N.J.). 537: 263-76. PMID 19378149 DOI: 10.1007/978-1-59745-251-9_13 |
0.414 |
|
| 2008 |
Ogurtsov AY, Mariño-Ramírez L, Johnson GR, Landsman D, Shabalina SA, Spiridonov NA. Expression patterns of protein kinases correlate with gene architecture and evolutionary rates. Plos One. 3: e3599. PMID 18974838 DOI: 10.1371/Journal.Pone.0003599 |
0.355 |
|
| 2008 |
Polavarapu N, Mariño-Ramírez L, Landsman D, McDonald JF, Jordan IK. Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA. Bmc Genomics. 9: 226. PMID 18485226 DOI: 10.1186/1471-2164-9-226 |
0.455 |
|
| 2008 |
Tharakaraman K, Bodenreider O, Landsman D, Spouge JL, Mariño-Ramírez L. The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site. Nucleic Acids Research. 36: 2777-86. PMID 18367472 DOI: 10.1093/Nar/Gkn137 |
0.439 |
|
| 2007 |
Riz I, Akimov SS, Eaker SS, Baxter KK, Lee HJ, Mariño-Ramírez L, Landsman D, Hawley TS, Hawley RG. TLX1/HOX11-induced hematopoietic differentiation blockade Oncogene. 26: 4115-4123. PMID 17213805 DOI: 10.1038/Sj.Onc.1210185 |
0.432 |
|
| 2006 |
Mariño-Ramírez L, Jordan IK, Landsman D. Multiple independent evolutionary solutions to core histone gene regulation. Genome Biology. 7: R122. PMID 17184543 DOI: 10.1186/Gb-2006-7-12-R122 |
0.389 |
|
| 2006 |
Tharakaraman K, Mariño-Ramírez L, Sheetlin SL, Landsman D, Spouge JL. Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements. Bmc Bioinformatics. 7: 408. PMID 16961919 DOI: 10.1186/1471-2105-7-408 |
0.353 |
|
| 2006 |
Mariño-Ramírez L, Hsu B, Baxevanis AD, Landsman D. The Histone Database: a comprehensive resource for histones and histone fold-containing proteins. Proteins. 62: 838-42. PMID 16345076 DOI: 10.1002/Prot.20814 |
0.432 |
|
| 2006 |
Baxevanis AD, Landsman D. Predictive Methods Using Protein Sequences Methods of Biochemical Analysis. 39: 246-267. PMID 9707934 DOI: 10.1002/9780470110607.Ch11 |
0.323 |
|
| 2005 |
Mariño-Ramírez L, Kann MG, Shoemaker BA, Landsman D. Histone structure and nucleosome stability. Expert Review of Proteomics. 2: 719-29. PMID 16209651 DOI: 10.1586/14789450.2.5.719 |
0.422 |
|
| 2005 |
Eriksson PR, Mendiratta G, McLaughlin NB, Wolfsberg TG, Mariño-RamÃrez L, Pompa TA, Jainerin M, Landsman D, Shen CH, Clark DJ. Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements. Molecular and Cellular Biology. 25: 9127-37. PMID 16199888 DOI: 10.1128/Mcb.25.20.9127-9137.2005 |
0.498 |
|
| 2005 |
Mariño-Ramírez L, Lewis KC, Landsman D, Jordan IK. Transposable elements donate lineage-specific regulatory sequences to host genomes. Cytogenetic and Genome Research. 110: 333-41. PMID 16093685 DOI: 10.1159/000084965 |
0.416 |
|
| 2005 |
Tharakaraman K, Mariño-Ramírez L, Sheetlin S, Landsman D, Spouge JL. Alignments anchored on genomic landmarks can aid in the identification of regulatory elements. Bioinformatics (Oxford, England). 21: i440-8. PMID 15961489 DOI: 10.1093/Bioinformatics/Bti1028 |
0.378 |
|
| 2005 |
Riz I, Akimov SS, Eaker SS, Marino-Ramirez L, Landsman D, Hawley TS, Hawley RG. TLX1/HOX11-Mediated Disruption of Hematopoietic Differentiation Programs. Blood. 106: 2997-2997. DOI: 10.1182/Blood.V106.11.2997.2997 |
0.358 |
|
| 2004 |
Roh TY, Ngau WC, Cui K, Landsman D, Zhao K. High-resolution genome-wide mapping of histone modifications. Nature Biotechnology. 22: 1013-6. PMID 15235610 DOI: 10.1038/Nbt990 |
0.446 |
|
| 2004 |
Mariño-Ramírez L, Spouge JL, Kanga GC, Landsman D. Statistical analysis of over-represented words in human promoter sequences. Nucleic Acids Research. 32: 949-58. PMID 14963262 DOI: 10.1093/Nar/Gkh246 |
0.41 |
|
| 2004 |
Sullivan SA, Landsman D. Mining core histone sequences from public protein databases. Methods in Enzymology. 375: 3-20. PMID 14870656 DOI: 10.1016/S0076-6879(03)75001-0 |
0.446 |
|
| 2003 |
Sullivan SA, Landsman D. Characterization of sequence variability in nucleosome core histone folds. Proteins. 52: 454-65. PMID 12866056 DOI: 10.1002/Prot.10441 |
0.414 |
|
| 2003 |
Szak ST, Pickeral OK, Landsman D, Boeke JD. Identifying related L1 retrotransposons by analyzing 3' transduced sequences. Genome Biology. 4: R30. PMID 12734010 DOI: 10.1186/Gb-2003-4-5-R30 |
0.333 |
|
| 2003 |
Strichman-Almashanu LZ, Bustin M, Landsman D. Retroposed copies of the HMG genes: a window to genome dynamics. Genome Research. 13: 800-12. PMID 12727900 DOI: 10.1101/Gr.893803 |
0.417 |
|
| 2002 |
Szak ST, Pickeral OK, Makalowski W, Boguski MS, Landsman D, Boeke JD. Molecular archeology of L1 insertions in the human genome. Genome Biology. 3: research0052. PMID 12372140 DOI: 10.1186/Gb-2002-3-10-Research0052 |
0.333 |
|
| 2002 |
Fassler J, Landsman D, Acharya A, Moll JR, Bonovich M, Vinson C. B-ZIP proteins encoded by the Drosophila genome: evaluation of potential dimerization partners. Genome Research. 12: 1190-200. PMID 12176927 DOI: 10.1101/Gr.67902 |
0.336 |
|
| 2002 |
Sullivan S, Sink DW, Trout KL, Makalowska I, Taylor PM, Baxevanis AD, Landsman D. The Histone Database. Nucleic Acids Research. 30: 341-2. PMID 11752331 DOI: 10.1093/Nar/30.1.341 |
0.466 |
|
| 2001 |
Fujibuchi W, Anderson JS, Landsman D. PROSPECT improves cis-acting regulatory element prediction by integrating expression profile data with consensus pattern searches. Nucleic Acids Research. 29: 3988-96. PMID 11574681 DOI: 10.1093/Nar/29.19.3988 |
0.355 |
|
| 2001 |
Wolfsberg TG, Landsman D. Expressed sequence tags (ESTs). Methods of Biochemical Analysis. 43: 283-301. PMID 11449729 DOI: 10.1002/0471223921.Ch12 |
0.324 |
|
| 2001 |
Birger Y, Ito Y, West KL, Landsman D, Bustin M. HMGN4, a newly discovered nucleosome-binding protein encoded by an intronless gene. Dna and Cell Biology. 20: 257-64. PMID 11410162 DOI: 10.1089/104454901750232454 |
0.397 |
|
| 2001 |
Nestler EJ, Landsman D. Learning about addiction from the genome. Nature. 409: 834-5. PMID 11237002 DOI: 10.1038/35057015 |
0.301 |
|
| 2000 |
Shirakawa H, Landsman D, Postnikov YV, Bustin M. NBP-45, a Novel Nucleosomal Binding Protein with a Tissue-specific and Developmentally Regulated Expression Journal of Biological Chemistry. 275: 6368-6374. PMID 10692437 DOI: 10.1074/Jbc.275.9.6368 |
0.41 |
|
| 2000 |
Sullivan SA, Aravind L, Makalowska I, Baxevanis AD, Landsman D. The Histone Database: a comprehensive WWW resource for histones and histone fold-containing proteins Nucleic Acids Research. 28: 320-322. PMID 10592260 DOI: 10.1093/Nar/28.1.320 |
0.469 |
|
| 1999 |
Makalowska I, Ferlanti ES, Baxevanis AD, Landsman D. Histone Sequence Database: sequences, structures, post-translational modifications and genetic loci. Nucleic Acids Research. 27: 323-4. PMID 9847217 DOI: 10.1093/Nar/27.1.323 |
0.455 |
|
| 1999 |
Wolfsberg TG, Gabrielian AE, Campbell MJ, Cho RJ, Spouge JL, Landsman D. Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae. Genome Research. 9: 775-792. DOI: 10.1101/Gr.9.8.775 |
0.425 |
|
| 1998 |
Aravind L, Landsman D. AT-hook motifs identified in a wide variety of DNA-binding proteins Nucleic Acids Research. 26: 4413-4421. PMID 9742243 DOI: 10.1093/Nar/26.19.4413 |
0.446 |
|
| 1998 |
Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, Wodicka L, Wolfsberg TG, Gabrielian AE, Landsman D, Lockhart DJ, Davis RW. A genome-wide transcriptional analysis of the mitotic cell cycle. Molecular Cell. 2: 65-73. PMID 9702192 DOI: 10.1016/S1097-2765(00)80114-8 |
0.379 |
|
| 1998 |
Patterton HG, Landel CC, Landsman D, Peterson CL, Simpson RT. The biochemical and phenotypic characterization of Hho1p, the putative linker histone H1 of Saccharomyces cerevisiae. The Journal of Biological Chemistry. 273: 7268-76. PMID 9516420 DOI: 10.1074/Jbc.273.13.7268 |
0.407 |
|
| 1998 |
Baxevanis AD, Landsman D. Histone Sequence Database: new histone fold family members. Nucleic Acids Research. 26: 372-5. PMID 9399877 DOI: 10.1093/Nar/26.1.372 |
0.455 |
|
| 1997 |
Leipe DD, Landsman D. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are members of an ancient protein superfamily Nucleic Acids Research. 25: 3693-3697. PMID 9278492 DOI: 10.1093/Nar/25.18.3693 |
0.486 |
|
| 1997 |
Neuwald AF, Landsman D. GCN5-related histone N-acetyltransferases belong to a diverse superfamily that includes the yeast SPT10 protein Trends in Biochemical Sciences. 22: 154-155. PMID 9175471 DOI: 10.1016/S0968-0004(97)01034-7 |
0.363 |
|
| 1997 |
Wolfsberg TG, Landsman D. A comparison of expressed sequence tags (ESTs) to human genomic sequences. Nucleic Acids Research. 25: 1626-1632. PMID 9092672 DOI: 10.1093/Nar/25.8.1626 |
0.399 |
|
| 1997 |
Baxevanis AD, Landsman D. Histone and histone fold sequences and structures: a database. Nucleic Acids Research. 25: 272-3. PMID 9016552 DOI: 10.1093/Nar/25.1.272 |
0.451 |
|
| 1996 |
Mermelstein F, Yeung K, Cao J, Inostroza JA, Erdjument-Bromage H, Eagelson K, Landsman D, Levitt P, Tempst P, Reinberg D. Requirement of a corepressor for Dr1-mediated repression of transcription. Genes & Development. 10: 1033-48. PMID 8608938 DOI: 10.1101/Gad.10.8.1033 |
0.372 |
|
| 1996 |
Baxevanis AD, Landsman D. Histone Sequence Database: a compilation of highly-conserved nucleoprotein sequences. Nucleic Acids Research. 24: 245-7. PMID 8594591 DOI: 10.1093/Nar/24.1.245 |
0.441 |
|
| 1996 |
Landsman D. Histone H1 inSaccharomyces cerevisiae: a double mystery solved? Trends in Biochemical Sciences. 21: 287-288. DOI: 10.1016/S0968-0004(96)30030-3 |
0.309 |
|
| 1995 |
Baxevanis AD, Landsman D. The HMG-1 box protein family: classification and functional relationships Nucleic Acids Research. 23: 1604-1613. PMID 7784217 DOI: 10.1093/Nar/23.9.1604 |
0.447 |
|
| 1995 |
Baxevanis AD, Bryant SH, Landsman D. Homology model building of the HMG-1 box structural domain. Nucleic Acids Research. 23: 1019-1029. PMID 7731789 DOI: 10.1093/Nar/23.6.1019 |
0.373 |
|
| 1995 |
Baxevanis AD, Arents G, Moudrianakis EN, Landsman D. A variety of DNA-binding and multimeric proteins contain the histone fold motif Nucleic Acids Research. 23: 2685-2691. PMID 7651829 DOI: 10.1093/Nar/23.14.2685 |
0.469 |
|
| 1995 |
Landsman D, Wolffe AP. Common sequence and structural features in the heat-shock factor and Ets families of DNA-binding domains. Trends in Biochemical Sciences. 20: 225-226. PMID 7631419 DOI: 10.1016/S0968-0004(00)89021-0 |
0.366 |
|
| 1993 |
Landsman D, Bustin M. A Signature for the HMG-1 Box DNA-binding Proteins Bioessays. 15: 539-546. PMID 8135767 DOI: 10.1002/Bies.950150807 |
0.433 |
|
| 1992 |
Landsman D. RNP-1, an RNA-binding motif is conserved in the DNA-binding cold shock domain Nucleic Acids Research. 20: 2861-2864. PMID 1614871 DOI: 10.1093/Nar/20.11.2861 |
0.38 |
|
| 1991 |
Landsman D, Bustin M. Assessment of the transcriptional activation potential of the HMG chromosomal proteins. Molecular and Cellular Biology. 11: 4483-4489. PMID 1908554 DOI: 10.1128/Mcb.11.9.4483 |
0.378 |
|
| 1990 |
Landsman D, Bustin M. Mouse non-histone chromosomal protein HMG-14 cDNA sequence. Nucleic Acids Research. 18: 5311-5311. PMID 2402471 DOI: 10.1093/Nar/18.17.5311 |
0.409 |
|
| 1990 |
Popescu N, Landsman D, Bustin M. Mapping the human gene coding for chromosomal protein HMG-17. Human Genetics. 85: 376-378. PMID 2394451 DOI: 10.1007/Bf00206764 |
0.344 |
|
| 1990 |
Bustin M, Lehn DA, Landsman D. Structural features of the HMG chromosomal proteins and their genes. Biochimica Et Biophysica Acta. 1049: 231-243. PMID 2200521 DOI: 10.1016/0167-4781(90)90092-G |
0.35 |
|
| 1990 |
Srikantha T, Landsman D, Bustin M. A single copy gene for chicken chromosomal protein HMG-14b has evolutionarily conserved features, has lost one of its introns and codes for a rapidly evolving protein Journal of Molecular Biology. 211: 49-61. PMID 2153836 DOI: 10.1016/0022-2836(90)90010-J |
0.393 |
|
| 1989 |
Landsman D, McBride OW, Bustin M. Human non-histone chromosomal protein HMG-17: identification, characterization, chromosome localization and RFLPs of a functional gene from the large multigene family Nucleic Acids Research. 17: 2301-2314. PMID 2565024 DOI: 10.1093/Nar/17.6.2301 |
0.435 |
|
| 1988 |
Landsman D, Zavou S, Soares N, Goodwin GH, Bustin M. Mouse non-histone chromosomal protein HMG-17 cDNA sequence Nucleic Acids Research. 16: 10386-10386. PMID 3194220 DOI: 10.1093/Nar/16.21.10386 |
0.409 |
|
| 1987 |
Landsman D, Bustin M. Chicken non-histone chromosomal protein HMG-17 cDNA sequence. Nucleic Acids Research. 15: 6750-6750. PMID 3628013 DOI: 10.1093/Nar/15.16.6750 |
0.41 |
|
| 1987 |
Srikantha T, Landsman D, Bustin M. Retropseudogenes for human chromosomal protein HMG-17 Journal of Molecular Biology. 197: 405-413. PMID 3441004 DOI: 10.1016/0022-2836(87)90554-7 |
0.433 |
|
| 1986 |
Druckmann S, Mendelson E, Landsman D, Bustin M. Immunofractionation of DNA sequences associated with HMG-17 in chromatin. Experimental Cell Research. 166: 486-96. PMID 3743668 DOI: 10.1016/0014-4827(86)90493-3 |
0.444 |
|
| 1986 |
Landsman D, Mendelson E, Druckmann S, Bustin M. Exchange of proteins during immunofractionation of chromatin. Experimental Cell Research. 163: 95-102. PMID 3510889 DOI: 10.1016/0014-4827(86)90561-6 |
0.365 |
|
| 1986 |
Mendelson E, Landsman D, Druckmann S, Bustin M. Immunofractionation of chromatin regions associated with histone H1o. European Journal of Biochemistry / Febs. 160: 253-60. PMID 2429835 DOI: 10.1111/J.1432-1033.1986.Tb09964.X |
0.36 |
|
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