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Bomyi Lim - Publications

Affiliations: 
Princeton University, Princeton, NJ 
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Syed S, Duan Y, Lim B. Modulation of protein-DNA binding reveals mechanisms of spatiotemporal gene control in early embryos. Elife. 12. PMID 37934571 DOI: 10.7554/eLife.85997  0.383
2023 Leyes Porello EA, Trudeau RT, Lim B. Transcriptional bursting: stochasticity in deterministic development. Development (Cambridge, England). 150. PMID 37337971 DOI: 10.1242/dev.201546  0.366
2023 Syed S, Duan Y, Lim B. Modulation of protein-DNA binding reveals mechanisms of spatiotemporal gene control in early embryos. Biorxiv : the Preprint Server For Biology. PMID 36711729 DOI: 10.1101/2023.01.05.522923  0.383
2022 Deng H, Jin G, Lim B. Unveiling dynamic enhancer-promoter interactions in Drosophila melanogaster. Biochemical Society Transactions. PMID 36350004 DOI: 10.1042/BST20220325  0.327
2022 Deng H, Lim B. Shared Transcriptional Machinery at Homologous Alleles Leads to Reduced Transcription in Early Embryos. Frontiers in Cell and Developmental Biology. 10: 912838. PMID 35898395 DOI: 10.3389/fcell.2022.912838  0.415
2021 McCarthy RL, Kaeding KE, Keller SH, Zhong Y, Xu L, Hsieh A, Hou Y, Donahue G, Becker JS, Alberto O, Lim B, Zaret KS. Diverse heterochromatin-associated proteins repress distinct classes of genes and repetitive elements. Nature Cell Biology. PMID 34354237 DOI: 10.1038/s41556-021-00725-7  0.331
2020 Lim B, Levine MS. Enhancer-promoter communication: hubs or loops? Current Opinion in Genetics & Development. 67: 5-9. PMID 33202367 DOI: 10.1016/j.gde.2020.10.001  0.383
2020 Keller SH, Jena SG, Yamazaki Y, Lim B. Regulation of spatiotemporal limits of developmental gene expression via enhancer grammar. Proceedings of the National Academy of Sciences of the United States of America. PMID 32541043 DOI: 10.1073/Pnas.1917040117  0.461
2018 Lim B, Fukaya T, Heist T, Levine M. Temporal dynamics of pair-rule stripes in living embryos. Proceedings of the National Academy of Sciences of the United States of America. PMID 30061421 DOI: 10.1073/Pnas.1810430115  0.731
2018 Lim B, Heist T, Levine M, Fukaya T. Visualization of Transvection in Living Drosophila Embryos. Molecular Cell. PMID 29606591 DOI: 10.1016/J.Molcel.2018.02.029  0.71
2018 Lim B. Imaging transcriptional dynamics. Current Opinion in Biotechnology. 52: 49-55. PMID 29501816 DOI: 10.1016/J.Copbio.2018.02.008  0.457
2017 Villoutreix P, Andén J, Lim B, Lu H, Kevrekidis IG, Singer A, Shvartsman SY. Synthesizing developmental trajectories. Plos Computational Biology. 13: e1005742. PMID 28922353 DOI: 10.1371/Journal.Pcbi.1005742  0.719
2017 Cardoso MA, Fontenele M, Lim B, Bisch PM, Shvartsman S, Araujo HM. A novel function for Cactus/IκB inhibitor to promote Dl nuclear localization and activity in the Drosophila embryo. Development (Cambridge, England). PMID 28705899 DOI: 10.1242/Dev.145557  0.639
2017 Fukaya T, Lim B, Levine M. Rapid Rates of Pol II Elongation in the Drosophila Embryo. Current Biology : Cb. PMID 28457866 DOI: 10.1016/J.Cub.2017.03.069  0.688
2017 Lim B, Levine M, Yamazaki Y. Transcriptional Pre-patterning of Drosophila Gastrulation. Current Biology : Cb. 27: 610. PMID 28222282 DOI: 10.1016/j.cub.2017.01.067  0.513
2017 Lim B, Levine M, Yamakazi Y. Transcriptional Pre-patterning of Drosophila Gastrulation. Current Biology : Cb. PMID 28089518 DOI: 10.1016/J.Cub.2016.11.047  0.644
2017 Lim B, Dsilva CJ, Kevrekidis IG, Shvartsman SY. Reconstructing ERK Signaling in the Drosophila Embryo from Fixed Images. Methods in Molecular Biology (Clifton, N.J.). 1487: 337-351. PMID 27924579 DOI: 10.1007/978-1-4939-6424-6_25  0.712
2016 Esposito E, Lim B, Guessous G, Falahati H, Levine M. Mitosis-associated repression in development. Genes & Development. 30: 1503-8. PMID 27401553 DOI: 10.1101/Gad.281188.116  0.74
2016 Fukaya T, Lim B, Levine M. Enhancer Control of Transcriptional Bursting. Cell. PMID 27293191 DOI: 10.1016/J.Cell.2016.05.025  0.735
2016 Levario TJ, Lim B, Shvartsman SY, Lu H. Microfluidics for High-Throughput Quantitative Studies of Early Development. Annual Review of Biomedical Engineering. PMID 26928208 DOI: 10.1146/Annurev-Bioeng-100515-013926  0.575
2015 Samee MA, Lim B, Samper N, Lu H, Rushlow CA, Jiménez G, Shvartsman SY, Sinha S. A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data. Cell Systems. 1: 396-407. PMID 27136354 DOI: 10.1016/J.Cels.2015.12.002  0.656
2015 Lim B, Dsilva CJ, Levario TJ, Lu H, Schüpbach T, Kevrekidis IG, Shvartsman SY. Dynamics of Inductive ERK Signaling in the Drosophila Embryo. Current Biology : Cb. PMID 26096970 DOI: 10.1016/J.Cub.2015.05.039  0.714
2015 Dsilva CJ, Lim B, Lu H, Singer A, Kevrekidis IG, Shvartsman SY. Temporal ordering and registration of images in studies of developmental dynamics. Development (Cambridge, England). 142: 1717-24. PMID 25834019 DOI: 10.1242/Dev.119396  0.651
2015 Samee MAH, Lim B, Samper N, Lu H, Rushlow CA, Jiménez G, Shvartsman SY, Sinha S. A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data Cell Systems. 1: 396-407. DOI: 10.1016/j.cels.2015.12.002  0.742
2014 Foo SM, Sun Y, Lim B, Ziukaite R, O'Brien K, Nien CY, Kirov N, Shvartsman SY, Rushlow CA. Zelda potentiates morphogen activity by increasing chromatin accessibility. Current Biology : Cb. 24: 1341-6. PMID 24909324 DOI: 10.1016/J.Cub.2014.04.032  0.783
2013 Fontenele M, Lim B, Oliveira D, Buffolo M, Perlman DH, Schupbach T, Araujo H. Calpain A modulates Toll responses by limited Cactus/IκB proteolysis. Molecular Biology of the Cell. 24: 2966-80. PMID 23864715 DOI: 10.1091/Mbc.E13-02-0113  0.33
2013 Lim B, Samper N, Lu H, Rushlow C, Jiménez G, Shvartsman SY. Kinetics of gene derepression by ERK signaling. Proceedings of the National Academy of Sciences of the United States of America. 110: 10330-5. PMID 23733957 DOI: 10.1073/Pnas.1303635110  0.794
2013 Levario TJ, Zhan M, Lim B, Shvartsman SY, Lu H. Microfluidic trap array for massively parallel imaging of Drosophila embryos. Nature Protocols. 8: 721-36. PMID 23493069 DOI: 10.1038/Nprot.2013.034  0.555
2012 Helman A, Lim B, Andreu MJ, Kim Y, Shestkin T, Lu H, Jiménez G, Shvartsman SY, Paroush Z. RTK signaling modulates the Dorsal gradient. Development (Cambridge, England). 139: 3032-9. PMID 22791891 DOI: 10.1242/Dev.075812  0.774
2012 Kanodia JS, Liang HL, Kim Y, Lim B, Zhan M, Lu H, Rushlow CA, Shvartsman SY. Pattern formation by graded and uniform signals in the early Drosophila embryo. Biophysical Journal. 102: 427-33. PMID 22325264 DOI: 10.1016/J.Bpj.2011.12.042  0.736
2011 Kim Y, Andreu MJ, Lim B, Chung K, Terayama M, Jiménez G, Berg CA, Lu H, Shvartsman SY. Gene regulation by MAPK substrate competition. Developmental Cell. 20: 880-7. PMID 21664584 DOI: 10.1016/J.Devcel.2011.05.009  0.795
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