William B. Yee - Related publications

Affiliations: 
University of Chicago, Chicago, IL 
Area:
Stem cell, cell biology
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Zaib S, Rana N, Khan I. Histone modifications and their role in epigenetics of cancer. Current Medicinal Chemistry. PMID 34749606 DOI: 10.2174/0929867328666211108105214   
2021 Kumar VC, Pai R. Genes of the month: H3.3 histone genes: H3F3A and H3F3B. Journal of Clinical Pathology. PMID 34667098 DOI: 10.1136/jclinpath-2021-207857   
2021 Palli SR. Epigenetic regulation of post-embryonic development. Current Opinion in Insect Science. 43: 63-69. PMID 33068783 DOI: 10.1016/j.cois.2020.09.011   
2021 Min S, Lee HS, Ji JH, Heo Y, Kim Y, Chae S, Choi YW, Kang HC, Nakanishi M, Cho H. The chromatin remodeler RSF1 coordinates epigenetic marks for transcriptional repression and DSB repair. Nucleic Acids Research. PMID 34850117 DOI: 10.1093/nar/gkab1093   
2021 Roopa, Priya B, Bhalla V, Kumar M, Kumar N. Fluorescent molecular probe-based activity and inhibition monitoring of histone deacetylases. Chemical Communications (Cambridge, England). 57: 11153-11164. PMID 34613324 DOI: 10.1039/d1cc04034k   
2021 Chakraborty U, Shen ZJ, Tyler J. Chaperoning histones at the DNA repair dance. Dna Repair. 108: 103240. PMID 34687987 DOI: 10.1016/j.dnarep.2021.103240   
2021 Kumar D, Cinghu S, Oldfield AJ, Yang P, Jothi R. Decoding the function of bivalent chromatin in development and cancer. Genome Research. PMID 34667120 DOI: 10.1101/gr.275736.121   
2021 Ding X, Liu X, Jiang G, Li Z, Song Y, Zhang D, Jiang Y, Duan X. SlJMJ7 orchestrates tomato fruit ripening via crosstalk between H3K4me3 and DML2-mediated DNA demethylation. The New Phytologist. PMID 34729792 DOI: 10.1111/nph.17838   
2021 Ding Q, Edwards MM, Wang N, Zhu X, Bracci AN, Hulke ML, Hu Y, Tong Y, Hsiao J, Charvet CJ, Ghosh S, Handsaker RE, Eggan K, Merkle FT, Gerhardt J, et al. The genetic architecture of DNA replication timing in human pluripotent stem cells. Nature Communications. 12: 6746. PMID 34799581 DOI: 10.1038/s41467-021-27115-9   
2021 Bhagwat M, Nagar S, Kaur P, Mehta R, Vancurova I, Vancura A. Replication stress inhibits synthesis of histone mRNAs in yeast by removing Spt10p and Spt21p from the histone promoters. The Journal of Biological Chemistry. 101246. PMID 34582893 DOI: 10.1016/j.jbc.2021.101246   
2021 Choi J, Ryoo ZY, Cho DH, Lee HS, Ryu HY. Trans-tail regulation-mediated suppression of cryptic transcription. Experimental & Molecular Medicine. PMID 34845331 DOI: 10.1038/s12276-021-00711-x   
2021 Reddy D, Bhattacharya S, Shah S, Rashid M, Gupta S. DNA methylation mediated downregulation of histone H3 variant H3.3 affects cell proliferation contributing to the development of HCC. Biochimica Et Biophysica Acta. Molecular Basis of Disease. 1868: 166284. PMID 34626773 DOI: 10.1016/j.bbadis.2021.166284   
2021 Nirala NK, Li Q, Ghule PN, Chen HJ, Li R, Zhu LJ, Wang R, Rice NP, Mao J, Stein JL, Stein GS, van Wijnen AJ, Ip YT. Hinfp is a guardian of the somatic genome by repressing transposable elements. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34620709 DOI: 10.1073/pnas.2100839118   
2021 Leonen CJA, Shimada M, Weller CE, Nakadai T, Hsu PL, Tyson EL, Mishra A, Shelton PMM, Sadilek M, Hawkins RD, Zheng N, Roeder RG, Chatterjee C. Sumoylation of the human histone H4 tail inhibits p300-mediated transcription by RNA polymerase II in cellular extracts. Elife. 10. PMID 34747692 DOI: 10.7554/eLife.67952   
2021 Bates DA, Bates CE, Earl AS, Skousen C, Fetbrandt AN, Ritchie J, Bodily PM, Johnson SM. Proximal-end bias from in-vitro reconstituted nucleosomes and the result on downstream data analysis. Plos One. 16: e0258737. PMID 34673804 DOI: 10.1371/journal.pone.0258737   
2021 Ahmad S, Côté V, Côté J. DNA damage-induced phosphorylation of histone H2A at serine 15 is linked to DNA end resection. Molecular and Cellular Biology. MCB0005621. PMID 34570618 DOI: 10.1128/MCB.00056-21   
2021 Jethmalani Y, Tran K, Negesse MY, Sun W, Ramos M, Jaiswal D, Jezek M, Amos S, Garcia EJ, Park D, Green EM. Set4 regulates stress response genes and coordinates histone deacetylases within yeast subtelomeres. Life Science Alliance. 4. PMID 34625508 DOI: 10.26508/lsa.202101126   
2021 Lewis TS, Sokolova V, Jung H, Ng H, Tan D. Structural basis of chromatin regulation by histone variant H2A.Z. Nucleic Acids Research. PMID 34643712 DOI: 10.1093/nar/gkab907   
2021 Shirra MK, Kocik RA, Ellison MA, Arndt KM. Opposing functions of the Hda1 complex and histone H2B mono-ubiquitylation in regulating cryptic transcription in Saccharomyces cerevisiae. G3 (Bethesda, Md.). PMID 34499735 DOI: 10.1093/g3journal/jkab298   
2021 Shen CH, Allan J. MNase Digestion Protection Patterns of the Linker DNA in Chromatosomes. Cells. 10. PMID 34571888 DOI: 10.3390/cells10092239   
2021 Bočkaj I, Martini TEI, de Camargo Magalhães ES, Bakker PL, Meeuwsen-de Boer TGJ, Armandari I, Meuleman SL, Mondria MT, Stok C, Kok YP, Bakker B, Wardenaar R, Seiler J, Broekhuis MJC, van den Bos H, et al. The H3.3K27M oncohistone affects replication stress outcome and provokes genomic instability in pediatric glioma. Plos Genetics. 17: e1009868. PMID 34752469 DOI: 10.1371/journal.pgen.1009868   
2021 Murawska M, Greenstein RA, Schauer T, Olsen KCF, Ng H, Ladurner AG, Al-Sady B, Braun S. The histone chaperone FACT facilitates heterochromatin spreading by regulating histone turnover and H3K9 methylation states. Cell Reports. 37: 109944. PMID 34731638 DOI: 10.1016/j.celrep.2021.109944   
2021 Lai D, Huang X, Wang C, Ow DW. Arabidopsis OXIDATIVE STRESS 3 enhances stress tolerance in Schizosaccharomyces pombe by promoting histone subunit replacement that upregulates drug-resistant genes. Genetics. 219. PMID 34740252 DOI: 10.1093/genetics/iyab149   
2021 Galloy M, Lachance C, Cheng X, Distéfano-Gagné F, Côté J, Fradet-Turcotte A. Approaches to Study Native Chromatin-Modifying Complex Activities and Functions. Frontiers in Cell and Developmental Biology. 9: 729338. PMID 34604228 DOI: 10.3389/fcell.2021.729338   
2021 Kumar S. SWI/SNF (BAF) complexes: From framework to a functional role in endothelial mechanotransduction. Current Topics in Membranes. 87: 171-198. PMID 34696885 DOI: 10.1016/bs.ctm.2021.09.006   
2021 Joo YJ, Buratowski S. Gds1 interacts with NuA4 to promote H4 acetylation at ribosomal protein genes. Molecular and Cellular Biology. MCB0037321. PMID 34694912 DOI: 10.1128/MCB.00373-21   
2021 Ide S, Sasaki A, Kawamoto Y, Bando T, Sugiyama H, Maeshima K. Telomere-specific chromatin capture using a pyrrole-imidazole polyamide probe for the identification of proteins and non-coding RNAs. Epigenetics & Chromatin. 14: 46. PMID 34627342 DOI: 10.1186/s13072-021-00421-8   
2021 Cheon Y, Han S, Kim T, Hwang D, Lee D. The chromatin remodeler Ino80 mediates RNAPII pausing site determination. Genome Biology. 22: 294. PMID 34663418 DOI: 10.1186/s13059-021-02500-1   
2021 Fletcher A, Zhao R, Enciso G. Non-cooperative mechanism for bounded and ultrasensitive chromatin remodeling. Journal of Theoretical Biology. 110946. PMID 34717936 DOI: 10.1016/j.jtbi.2021.110946   
2021 Zhao H, Guo M, Zhang F, Shao X, Liu G, Xing Y, Zhao X, Luo L, Cai L. Nucleosome Assembly and Disassembly Are Governed by Chemical Kinetic Principles. Frontiers in Cell and Developmental Biology. 9: 762571. PMID 34692710 DOI: 10.3389/fcell.2021.762571   
2021 Xiao C, Fan T, Tian H, Zheng Y, Zhou Z, Li S, Li C, He J. H3K36 trimethylation-mediated biological functions in cancer. Clinical Epigenetics. 13: 199. PMID 34715919 DOI: 10.1186/s13148-021-01187-2   
2021 Popova LV, Nagarajan P, Lovejoy CM, Sunkel BD, Gardner ML, Wang M, Freitas MA, Stanton BZ, Parthun MR. Epigenetic regulation of nuclear lamina-associated heterochromatin by HAT1 and the acetylation of newly synthesized histones. Nucleic Acids Research. PMID 34788845 DOI: 10.1093/nar/gkab1044   
2021 Hogan AK, Sathyan KM, Willis AB, Khurana S, Srivastava S, Zasadzińska E, Lee AS, Bailey AO, Gaynes MN, Huang J, Bodner J, Rosencrance CD, Wong KA, Morgan MA, Eagen KP, et al. UBR7 acts as a histone chaperone for post-nucleosomal histone H3. The Embo Journal. e108307. PMID 34786730 DOI: 10.15252/embj.2021108307   
2021 Quan H, Tian H, Liu S, Xue Y, Zhang Y, Xie W, Gao YQ. Progressive Domain Segregation in Early Embryonic Development and Underlying Correlation to Genetic and Epigenetic Changes. Cells. 10. PMID 34685501 DOI: 10.3390/cells10102521   
2021 Zhang Y, Jang H, Xiao R, Kakoulidou I, Piecyk RS, Johannes F, Schmitz RJ. Heterochromatin is a quantitative trait associated with spontaneous epiallele formation. Nature Communications. 12: 6958. PMID 34845222 DOI: 10.1038/s41467-021-27320-6   
2021 Chen B, Ali S, Zhang X, Zhang Y, Wang M, Zhang Q, Xie L. Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch. Bmc Genomics. 22: 772. PMID 34711171 DOI: 10.1186/s12864-021-08063-6   
2021 Valencia AM, Pașca SP. Chromatin dynamics in human brain development and disease. Trends in Cell Biology. PMID 34610892 DOI: 10.1016/j.tcb.2021.09.001   
2021 Groh S, Milton AV, Marinelli LK, Sickinger CV, Russo A, Bollig H, de Almeida GP, Schmidt A, Forné I, Imhof A, Schotta G. Morc3 silences endogenous retroviruses by enabling Daxx-mediated histone H3.3 incorporation. Nature Communications. 12: 5996. PMID 34650047 DOI: 10.1038/s41467-021-26288-7   
2021 Zhao F, Zhang H, Zhao T, Li Z, Jiang D. The histone variant H3.3 promotes the active chromatin state to repress flowering in Arabidopsis. Plant Physiology. 186: 2051-2063. PMID 34618105 DOI: 10.1093/plphys/kiab224   
2021 Marcel SS, Quimby AL, Noel MP, Jaimes OC, Mehrab-Mohseni M, Ashur SA, Velasco B, Tsuruta JK, Kasoji SK, Santos CM, Dayton PA, Parker JS, Davis IJ, Pattenden SG. Genome-wide cancer-specific chromatin accessibility patterns derived from archival processed xenograft tumors. Genome Research. PMID 34815311 DOI: 10.1101/gr.275219.121   
2021 Van Rechem C, Ji F, Chakraborty D, Black JC, Sadreyev RI, Whetstine JR. Collective regulation of chromatin modifications predicts replication timing during cell cycle. Cell Reports. 37: 109799. PMID 34610305 DOI: 10.1016/j.celrep.2021.109799   
2021 Kim HS. Genetic Interaction Between Site-Specific Epigenetic Marks and Roles of H4v in Transcription Termination in . Frontiers in Cell and Developmental Biology. 9: 744878. PMID 34722526 DOI: 10.3389/fcell.2021.744878   
2021 Tang G, Yuan J, Wang J, Zhang YZ, Xie SS, Wang H, Tao Z, Liu H, Kistler HC, Zhao Y, Duan CG, Liu W, Ma Z, Chen Y. Fusarium BP1 is a reader of H3K27 methylation. Nucleic Acids Research. 49: 10448-10464. PMID 34570240 DOI: 10.1093/nar/gkab844   
2021 Terranova CJ, Stemler KM, Barrodia P, Jeter-Jones SL, Ge Z, de la Cruz Bonilla M, Raman A, Cheng CW, Allton KL, Arslan E, Yilmaz ÖH, Barton MC, Rai K, Piwnica-Worms H. Reprogramming of H3K9bhb at regulatory elements is a key feature of fasting in the small intestine. Cell Reports. 37: 110044. PMID 34818540 DOI: 10.1016/j.celrep.2021.110044   
2021 Shaukat A, Khan MHF, Ahmad H, Umer Z, Tariq M. Interplay Between BALL and CREB Binding Protein Maintains H3K27 Acetylation on Active Genes in . Frontiers in Cell and Developmental Biology. 9: 740866. PMID 34650987 DOI: 10.3389/fcell.2021.740866   
2021 Khilji S, Li Y, Chen J, Li Q. Multi-Omics Approach to Dissect the Mechanisms of Rexinoid Signaling in Myoblast Differentiation. Frontiers in Pharmacology. 12: 746513. PMID 34603059 DOI: 10.3389/fphar.2021.746513   
2021 Aldera AP, Govender D. Gene of the month: H3F3A and H3F3B. Journal of Clinical Pathology. PMID 34782425 DOI: 10.1136/jclinpath-2021-207751   
2021 Gautam P, Sharma A, Bhatnagar A. Global histone modification analysis reveals hypoacetylated H3 and H4 histones in B Cells from systemic lupus erythematosus patients. Immunology Letters. 240: 41-45. PMID 34614442 DOI: 10.1016/j.imlet.2021.09.007   
2021 Li Z, Kuppe C, Ziegler S, Cheng M, Kabgani N, Menzel S, Zenke M, Kramann R, Costa IG. Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen. Nature Communications. 12: 6386. PMID 34737275 DOI: 10.1038/s41467-021-26530-2   
2021 Matsui H, Iriyama T, Sayama S, Inaoka N, Suzuki K, Yoshikawa M, Ichinose M, Sone K, Kumasawa K, Nagamatsu T, Fujisawa T, Naguro I, Ichijo H, Fujii T, Osuga Y. Elevated placental histone H3K4 methylation via upregulated histone methyltransferases SETD1A and SMYD3 in preeclampsia and its possible involvement in hypoxia-induced pathophysiological process. Placenta. 115: 60-69. PMID 34560329 DOI: 10.1016/j.placenta.2021.09.009