James T. Kadonaga, Ph.D. - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 

140 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Chavez C, Cruz-Becerra G, Fei J, Kassavetis GA, Kadonaga JT. The tardigrade damage suppressor protein binds to nucleosomes and protects DNA from hydroxyl radicals. Elife. 8. PMID 31571581 DOI: 10.7554/eLife.47682  0.92
2019 Vo Ngoc L, Kassavetis GA, Kadonaga JT. The RNA Polymerase II Core Promoter in . Genetics. 212: 13-24. PMID 31053615 DOI: 10.1534/genetics.119.302021  0.44
2019 Shir-Shapira H, Sloutskin A, Adato O, Ovadia-Shochat A, Ideses D, Zehavi Y, Kassavetis G, Kadonaga JT, Unger R, Juven-Gershon T. Identification of evolutionarily conserved downstream core promoter elements required for the transcriptional regulation of Fushi tarazu target genes. Plos One. 14: e0215695. PMID 30998799 DOI: 10.1371/journal.pone.0215695  0.32
2019 Wang W, Xu J, Limbo O, Fei J, Kassavetis GA, Chong J, Kadonaga JT, Russell P, Li B, Wang D. Molecular basis of chromatin remodeling by Rhp26, a yeast CSB ortholog. Proceedings of the National Academy of Sciences of the United States of America. PMID 30867290 DOI: 10.1073/pnas.1818163116  0.92
2018 Fei J, Ishii H, Hoeksema MA, Meitinger F, Kassavetis GA, Glass CK, Ren B, Kadonaga JT. NDF, a nucleosome destabilizing factor that facilitates transcription through nucleosomes. Genes & Development. PMID 29759984 DOI: 10.1101/gad.313973.118  0.92
2017 Khuong MT, Fei J, Cruz-Becerra G, Kadonaga JT. A simple and versatile system for the ATP-dependent assembly of chromatin. The Journal of Biological Chemistry. PMID 28982979 DOI: 10.1074/jbc.M117.815365  0.92
2017 Vo Ngoc L, Wang YL, Kassavetis GA, Kadonaga JT. The punctilious RNA polymerase II core promoter. Genes & Development. 31: 1289-1301. PMID 28808065 DOI: 10.1101/gad.303149.117  0.44
2016 Khuong MT, Fei J, Ishii H, Kadonaga JT. Prenucleosomes and Active Chromatin. Cold Spring Harbor Symposia On Quantitative Biology. PMID 26767995 DOI: 10.1101/sqb.2015.80.027300  0.92
2015 Fei J, Torigoe SE, Brown CR, Khuong MT, Kassavetis GA, Boeger H, Kadonaga JT. The prenucleosome, a stable conformational isomer of the nucleosome. Genes & Development. 29: 2563-75. PMID 26680301 DOI: 10.1101/gad.272633.115  1
2015 Duttke SH, Lacadie SA, Ibrahim MM, Glass CK, Corcoran DL, Benner C, Heinz S, Kadonaga JT, Ohler U. Perspectives on Unidirectional versus Divergent Transcription. Molecular Cell. 60: 348-9. PMID 26545075 DOI: 10.1016/j.molcel.2015.10.014  1
2015 Ishii H, Kadonaga JT, Ren B. MPE-seq, a new method for the genome-wide analysis of chromatin structure. Proceedings of the National Academy of Sciences of the United States of America. 112: E3457-65. PMID 26080409 DOI: 10.1073/pnas.1424804112  1
2015 Duttke SH, Lacadie SA, Ibrahim MM, Glass CK, Corcoran DL, Benner C, Heinz S, Kadonaga JT, Ohler U. Human promoters are intrinsically directional. Molecular Cell. 57: 674-84. PMID 25639469 DOI: 10.1016/j.molcel.2014.12.029  1
2014 Wang L, Limbo O, Fei J, Chen L, Kim B, Luo J, Chong J, Conaway RC, Conaway JW, Ranish JA, Kadonaga JT, Russell P, Wang D. Regulation of the Rhp26ERCC6/CSB chromatin remodeler by a novel conserved leucine latch motif. Proceedings of the National Academy of Sciences of the United States of America. 111: 18566-71. PMID 25512493 DOI: 10.1073/pnas.1420227112  1
2014 Duttke SH, Doolittle RF, Wang YL, Kadonaga JT. TRF2 and the evolution of the bilateria. Genes & Development. 28: 2071-6. PMID 25274724 DOI: 10.1101/gad.250563.114  1
2014 Wang YL, Duttke SH, Chen K, Johnston J, Kassavetis GA, Zeitlinger J, Kadonaga JT. TRF2, but not TBP, mediates the transcription of ribosomal protein genes. Genes & Development. 28: 1550-5. PMID 24958592 DOI: 10.1101/gad.245662.114  1
2014 Kassavetis GA, Kadonaga JT. The annealing helicase and branch migration activities of Drosophila HARP. Plos One. 9: e98173. PMID 24866343 DOI: 10.1371/journal.pone.0098173  1
2013 Torigoe SE, Patel A, Khuong MT, Bowman GD, Kadonaga JT. ATP-dependent chromatin assembly is functionally distinct from chromatin remodeling. Elife. 2: e00863. PMID 23986862 DOI: 10.7554/eLife.00863  1
2013 Theisen JW, Gucwa JS, Yusufzai T, Khuong MT, Kadonaga JT. Biochemical analysis of histone deacetylase-independent transcriptional repression by MeCP2. The Journal of Biological Chemistry. 288: 7096-104. PMID 23349465 DOI: 10.1074/jbc.M112.438697  1
2013 Cianfrocco MA, Kassavetis GA, Grob P, Fang J, Juven-Gershon T, Kadonaga JT, Nogales E. Human TFIID binds to core promoter DNA in a reorganized structural state. Cell. 152: 120-31. PMID 23332750 DOI: 10.1016/j.cell.2012.12.005  1
2012 Kadonaga JT. Perspectives on the RNA polymerase II core promoter. Wiley Interdisciplinary Reviews. Developmental Biology. 1: 40-51. PMID 23801666 DOI: 10.1002/wdev.21  1
2011 Torigoe SE, Urwin DL, Ishii H, Smith DE, Kadonaga JT. Identification of a rapidly formed nonnucleosomal histone-DNA intermediate that is converted into chromatin by ACF. Molecular Cell. 43: 638-48. PMID 21855802 DOI: 10.1016/j.molcel.2011.07.017  1
2011 Yusufzai T, Kadonaga JT. Branching out with DNA helicases. Current Opinion in Genetics & Development. 21: 214-8. PMID 21324673 DOI: 10.1016/j.gde.2011.01.019  1
2010 Yusufzai T, Kadonaga JT. Annealing helicase 2 (AH2), a DNA-rewinding motor with an HNH motif. Proceedings of the National Academy of Sciences of the United States of America. 107: 20970-3. PMID 21078962 DOI: 10.1073/pnas.1011196107  1
2010 Parry TJ, Theisen JW, Hsu JY, Wang YL, Corcoran DL, Eustice M, Ohler U, Kadonaga JT. The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery. Genes & Development. 24: 2013-8. PMID 20801935 DOI: 10.1101/gad.1951110  1
2010 Theisen JW, Lim CY, Kadonaga JT. Three key subregions contribute to the function of the downstream RNA polymerase II core promoter. Molecular and Cellular Biology. 30: 3471-9. PMID 20457814 DOI: 10.1128/MCB.00053-10  1
2010 Juven-Gershon T, Kadonaga JT. Regulation of gene expression via the core promoter and the basal transcriptional machinery. Developmental Biology. 339: 225-9. PMID 19682982 DOI: 10.1016/j.ydbio.2009.08.009  1
2010 Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, Kadonaga JT, Liu XS, Struhl K. Reply to Evidence against a genomic code for nucleosome positioning Nature Structural and Molecular Biology. 17: 920-923. DOI: 10.1038/nsmb0810-920  1
2009 Yusufzai T, Kong X, Yokomori K, Kadonaga JT. The annealing helicase HARP is recruited to DNA repair sites via an interaction with RPA. Genes & Development. 23: 2400-4. PMID 19793863 DOI: 10.1101/gad.1831509  1
2009 Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, Kadonaga JT, Liu XS, Struhl K. Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nature Structural & Molecular Biology. 16: 847-52. PMID 19620965 DOI: 10.1038/nsmb.1636  1
2009 Rattner BP, Yusufzai T, Kadonaga JT. HMGN proteins act in opposition to ATP-dependent chromatin remodeling factors to restrict nucleosome mobility. Molecular Cell. 34: 620-6. PMID 19524541 DOI: 10.1016/j.molcel.2009.04.014  1
2008 Yusufzai T, Kadonaga JT. HARP is an ATP-driven annealing helicase. Science (New York, N.Y.). 322: 748-50. PMID 18974355 DOI: 10.1126/science.1161233  1
2008 Juven-Gershon T, Hsu JY, Kadonaga JT. Caudal, a key developmental regulator, is a DPE-specific transcriptional factor. Genes & Development. 22: 2823-30. PMID 18923080 DOI: 10.1101/gad.1698108  1
2008 Hsu JY, Juven-Gershon T, Marr MT, Wright KJ, Tjian R, Kadonaga JT. TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription. Genes & Development. 22: 2353-8. PMID 18703680 DOI: 10.1101/gad.1681808  1
2008 Pfeiffer BD, Jenett A, Hammonds AS, Ngo TT, Misra S, Murphy C, Scully A, Carlson JW, Wan KH, Laverty TR, Mungall C, Svirskas R, Kadonaga JT, Doe CQ, Eisen MB, et al. Tools for neuroanatomy and neurogenetics in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 105: 9715-20. PMID 18621688 DOI: 10.1073/pnas.0803697105  1
2008 Juven-Gershon T, Hsu JY, Theisen JW, Kadonaga JT. The RNA polymerase II core promoter - the gateway to transcription. Current Opinion in Cell Biology. 20: 253-9. PMID 18436437 DOI: 10.1016/j.ceb.2008.03.003  1
2007 Konev AY, Tribus M, Park SY, Podhraski V, Lim CY, Emelyanov AV, Vershilova E, Pirrotta V, Kadonaga JT, Lusser A, Fyodorov DV. CHD1 motor protein is required for deposition of histone variant H3.3 into chromatin in vivo. Science (New York, N.Y.). 317: 1087-90. PMID 17717186 DOI: 10.1126/science.1145339  1
2006 Juven-Gershon T, Cheng S, Kadonaga JT. Rational design of a super core promoter that enhances gene expression. Nature Methods. 3: 917-22. PMID 17124735 DOI: 10.1038/nmeth937  1
2006 Juven-Gershon T, Hsu JY, Kadonaga JT. Perspectives on the RNA polymerase II core promoter. Biochemical Society Transactions. 34: 1047-50. PMID 17073747 DOI: 10.1042/BST0341047  1
2006 Santoso B, Kadonaga JT. Reconstitution of chromatin transcription with purified components reveals a chromatin-specific repressive activity of p300. Nature Structural & Molecular Biology. 13: 131-9. PMID 16415879 DOI: 10.1038/nsmb1048  1
2005 Lebedeva LA, Nabirochkina EN, Kurshakova MM, Robert F, Krasnov AN, Evgen'ev MB, Kadonaga JT, Georgieva SG, Tora L. Occupancy of the Drosophila hsp70 promoter by a subset of basal transcription factors diminishes upon transcriptional activation. Proceedings of the National Academy of Sciences of the United States of America. 102: 18087-92. PMID 16330756 DOI: 10.1073/pnas.0509063102  1
2005 Gemmen GJ, Sim R, Haushalter KA, Ke PC, Kadonaga JT, Smith DE. Forced unraveling of nucleosomes assembled on heterogeneous DNA using core histones, NAP-1, and ACF. Journal of Molecular Biology. 351: 89-99. PMID 16002089 DOI: 10.1016/j.jmb.2005.05.058  1
2005 Lusser A, Urwin DL, Kadonaga JT. Distinct activities of CHD1 and ACF in ATP-dependent chromatin assembly. Nature Structural & Molecular Biology. 12: 160-6. PMID 15643425 DOI: 10.1038/nsmb884  1
2005 Kadonaga JT. Course 3 Regulation of transcription by RNA polymerase II Les Houches Summer School Proceedings. 82: 73-89. DOI: 10.1016/S0924-8099(05)80030-7  1
2004 Lusser A, Kadonaga JT. Strategies for the reconstitution of chromatin. Nature Methods. 1: 19-26. PMID 15789029 DOI: 10.1038/nmeth709  1
2004 Lim CY, Santoso B, Boulay T, Dong E, Ohler U, Kadonaga JT. The MTE, a new core promoter element for transcription by RNA polymerase II. Genes & Development. 18: 1606-17. PMID 15231738 DOI: 10.1101/gad.1193404  1
2004 Alexiadis V, Lusser A, Kadonaga JT. A conserved N-terminal motif in Rad54 is important for chromatin remodeling and homologous strand pairing. The Journal of Biological Chemistry. 279: 27824-9. PMID 15105430 DOI: 10.1074/jbc.M402648200  1
2004 Fyodorov DV, Blower MD, Karpen GH, Kadonaga JT. Acf1 confers unique activities to ACF/CHRAC and promotes the formation rather than disruption of chromatin in vivo. Genes & Development. 18: 170-83. PMID 14752009 DOI: 10.1101/gad.1139604  1
2004 Kadonaga JT. Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors. Cell. 116: 247-57. PMID 14744435 DOI: 10.1016/S0092-8674(03)01078-X  1
2003 Fyodorov DV, Kadonaga JT. Chromatin assembly in vitro with purified recombinant ACF and NAP-1. Methods in Enzymology. 371: 499-515. PMID 14712724 DOI: 10.1016/S0076-6879(03)71037-4  1
2003 Lusser A, Kadonaga JT. Chromatin remodeling by ATP-dependent molecular machines. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 25: 1192-200. PMID 14635254 DOI: 10.1002/bies.10359  1
2003 Haushalter KA, Kadonaga JT. Chromatin assembly by DNA-translocating motors. Nature Reviews. Molecular Cell Biology. 4: 613-20. PMID 12923523 DOI: 10.1038/nrm1177  1
2003 Smale ST, Kadonaga JT. The RNA polymerase II core promoter. Annual Review of Biochemistry. 72: 449-79. PMID 12651739 DOI: 10.1146/annurev.biochem.72.121801.161520  0.8
2003 Parsons XH, Garcia SN, Pillus L, Kadonaga JT. Histone deacetylation by Sir2 generates a transcriptionally repressed nucleoprotein complex. Proceedings of the National Academy of Sciences of the United States of America. 100: 1609-14. PMID 12571358 DOI: 10.1073/pnas.0434064100  1
2002 Kadonaga JT. The DPE, a core promoter element for transcription by RNA polymerase II. Experimental & Molecular Medicine. 34: 259-64. PMID 12515390 DOI: 10.1038/emm.2002.36  1
2002 Alexiadis V, Kadonaga JT. Strand pairing by Rad54 and Rad51 is enhanced by chromatin. Genes & Development. 16: 2767-71. PMID 12414729 DOI: 10.1101/gad.1032102  1
2002 Butler JE, Kadonaga JT. The RNA polymerase II core promoter: a key component in the regulation of gene expression. Genes & Development. 16: 2583-92. PMID 12381658 DOI: 10.1101/gad.1026202  1
2002 Fyodorov DV, Kadonaga JT. Dynamics of ATP-dependent chromatin assembly by ACF. Nature. 418: 897-900. PMID 12192415 DOI: 10.1038/nature00929  1
2002 Fyodorov DV, Kadonaga JT. Binding of Acf1 to DNA involves a WAC motif and is important for ACF-mediated chromatin assembly. Molecular and Cellular Biology. 22: 6344-53. PMID 12192034 DOI: 10.1128/MCB.22.18.6344-6353.2002  1
2002 Levenstein ME, Kadonaga JT. Biochemical analysis of chromatin containing recombinant Drosophila core histones. The Journal of Biological Chemistry. 277: 8749-54. PMID 11773058 DOI: 10.1074/jbc.M111212200  1
2001 Kerrigan LA, Kadonaga JT. Purification of sequence-specific DNA-binding proteins by affinity chromatography. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 9.6. PMID 18429215 DOI: 10.1002/0471140864.ps0906s11  1
2001 Kerrigan LA, Kadonaga JT. Purification of sequence-specific DNA-binding proteins by affinity chromatography. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 12.10. PMID 18265082 DOI: 10.1002/0471142727.mb1210s24  1
2001 Butler JE, Kadonaga JT. Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs. Genes & Development. 15: 2515-9. PMID 11581157 DOI: 10.1101/gad.924301  1
2001 Fyodorov DV, Kadonaga JT. The many faces of chromatin remodeling: SWItching beyond transcription. Cell. 106: 523-5. PMID 11551498 DOI: 10.1016/S0092-8674(01)00478-0  1
2001 Tyler JK, Collins KA, Prasad-Sinha J, Amiott E, Bulger M, Harte PJ, Kobayashi R, Kadonaga JT. Interaction between the Drosophila CAF-1 and ASF1 chromatin assembly factors. Molecular and Cellular Biology. 21: 6574-84. PMID 11533245 DOI: 10.1128/MCB.21.19.6574-6584.2001  1
2001 Manning ET, Ikehara T, Ito T, Kadonaga JT, Kraus WL. p300 forms a stable, template-committed complex with chromatin: role for the bromodomain. Molecular and Cellular Biology. 21: 3876-87. PMID 11359896 DOI: 10.1128/MCB.21.12.3876-3887.2001  1
2001 Huang X, Kadonaga JT. Biochemical analysis of transcriptional repression by Drosophila histone deacetylase 1. The Journal of Biological Chemistry. 276: 12497-500. PMID 11278256 DOI: 10.1074/jbc.C100034200  1
2000 Willy PJ, Kobayashi R, Kadonaga JT. A basal transcription factor that activates or represses transcription. Science (New York, N.Y.). 290: 982-5. PMID 11062130 DOI: 10.1126/science.290.5493.982  1
2000 Jiang W, Nordeen SK, Kadonaga JT. Transcriptional analysis of chromatin assembled with purified ACF and dNAP1 reveals that acetyl-CoA is required for preinitiation complex assembly. The Journal of Biological Chemistry. 275: 39819-22. PMID 11054407 DOI: 10.1074/jbc.C000713200  1
2000 Jones KA, Kadonaga JT. Exploring the transcription-chromatin interface. Genes & Development. 14: 1992-6. PMID 10950863  1
2000 Kutach AK, Kadonaga JT. The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters. Molecular and Cellular Biology. 20: 4754-64. PMID 10848601 DOI: 10.1128/MCB.20.13.4754-4764.2000  1
1999 Tyler JK, Adams CR, Chen SR, Kobayashi R, Kamakaka RT, Kadonaga JT. The RCAF complex mediates chromatin assembly during DNA replication and repair. Nature. 402: 555-60. PMID 10591219 DOI: 10.1038/990147  1
1999 Tyler JK, Kadonaga JT. The "dark side" of chromatin remodeling: repressive effects on transcription. Cell. 99: 443-6. PMID 10589670  1
1999 Kraus WL, Manning ET, Kadonaga JT. Biochemical analysis of distinct activation functions in p300 that enhance transcription initiation with chromatin templates. Molecular and Cellular Biology. 19: 8123-35. PMID 10567538  1
1999 Ito T, Levenstein ME, Fyodorov DV, Kutach AK, Kobayashi R, Kadonaga JT. ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in the ATP-dependent catalysis of chromatin assembly. Genes & Development. 13: 1529-39. PMID 10385622  1
1999 Kadonaga JT, Grunstein M. Chromatin: The packaging is the message Current Opinion in Genetics and Development. 9: 129-131. DOI: 10.1016/S0959-437X(99)80019-7  1
1999 Ausio J, Pazin MJ, Bhargava P, Geiduschek EP, Kadonaga JT. Nucleosome mobility and the maintenance of nucleosome positioning Chemtracts. 12: 165-170.  1
1998 Burke TW, Willy PJ, Kutach AK, Butler JE, Kadonaga JT. The DPE, a conserved downstream core promoter element that is functionally analogous to the TATA box. Cold Spring Harbor Symposia On Quantitative Biology. 63: 75-82. PMID 10384272  1
1998 Pazin MJ, Hermann JW, Kadonaga JT. Promoter structure and transcriptional activation with chromatin templates assembled in vitro. A single Gal4-VP16 dimer binds to chromatin or to DNA with comparable affinity. The Journal of Biological Chemistry. 273: 34653-60. PMID 9852139 DOI: 10.1074/jbc.273.51.34653  1
1998 Ito T, Muramatsu M, Kadonaga JT. [Chromatin assembly and reconfiguration]. Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 43: 2087-93. PMID 9838850  1
1998 Näär AM, Beaurang PA, Robinson KM, Oliner JD, Avizonis D, Scheek S, Zwicker J, Kadonaga JT, Tjian R. Chromatin, TAFs, and a novel multiprotein coactivator are required for synergistic activation by Sp1 and SREBP-1a in vitro. Genes & Development. 12: 3020-31. PMID 9765204  1
1998 Robinson KM, Kadonaga JT. The use of chromatin templates to recreate transcriptional regulatory phenomena in vitro. Biochimica Et Biophysica Acta. 1378: M1-6. PMID 9739762 DOI: 10.1016/S0304-419X(98)00008-0  1
1998 Blackwood EM, Kadonaga JT. Going the distance: a current view of enhancer action. Science (New York, N.Y.). 281: 60-3. PMID 9679020 DOI: 10.1126/science.281.5373.60  1
1998 Kadonaga JT. Eukaryotic transcription: an interlaced network of transcription factors and chromatin-modifying machines. Cell. 92: 307-13. PMID 9476891 DOI: 10.1016/S0092-8674(00)80924-1  1
1998 Kraus WL, Kadonaga JT. p300 and estrogen receptor cooperatively activate transcription via differential enhancement of initiation and reinitiation. Genes & Development. 12: 331-42. PMID 9450928  1
1997 Ito T, Tyler JK, Kadonaga JT. Chromatin assembly factors: a dual function in nucleosome formation and mobilization? Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 2: 593-600. PMID 9427281  1
1997 Burke TW, Kadonaga JT. The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila. Genes & Development. 11: 3020-31. PMID 9367984  1
1997 Ito T, Bulger M, Pazin MJ, Kobayashi R, Kadonaga JT. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell. 90: 145-55. PMID 9230310 DOI: 10.1016/S0092-8674(00)80321-9  1
1997 Ouhammouch M, Sayre MH, Kadonaga JT, Geiduschek EP. Activation of RNA polymerase II by topologically linked DNA-tracking proteins. Proceedings of the National Academy of Sciences of the United States of America. 94: 6718-23. PMID 9192631 DOI: 10.1073/pnas.94.13.6718  1
1997 Pazin MJ, Kadonaga JT. What's up and down with histone deacetylation and transcription? Cell. 89: 325-8. PMID 9150131 DOI: 10.1016/S0092-8674(00)80211-1  1
1997 Pazin MJ, Kadonaga JT. SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions? Cell. 88: 737-40. PMID 9118215 DOI: 10.1016/S0092-8674(00)81918-2  1
1997 Pazin MJ, Bhargava P, Geiduschek EP, Kadonaga JT. Nucleosome mobility and the maintenance of nucleosome positioning. Science (New York, N.Y.). 276: 809-12. PMID 9115208 DOI: 10.1126/science.276.5313.809  1
1996 Tyler JK, Bulger M, Kamakaka RT, Kobayashi R, Kadonaga JT. The p55 subunit of Drosophila chromatin assembly factor 1 is homologous to a histone deacetylase-associated protein. Molecular and Cellular Biology. 16: 6149-59. PMID 8887645  1
1996 Ito T, Tyler JK, Bulger M, Kobayashi R, Kadonaga JT. ATP-facilitated chromatin assembly with a nucleoplasmin-like protein from Drosophila melanogaster. The Journal of Biological Chemistry. 271: 25041-8. PMID 8798787 DOI: 10.1074/jbc.271.40.25041  1
1996 Ito T, Bulger M, Kobayashi R, Kadonaga JT. Drosophila NAP-1 is a core histone chaperone that functions in ATP-facilitated assembly of regularly spaced nucleosomal arrays. Molecular and Cellular Biology. 16: 3112-24. PMID 8649423  1
1996 Kamakaka RT, Bulger M, Kaufman PD, Stillman B, Kadonaga JT. Postreplicative chromatin assembly by Drosophila and human chromatin assembly factor 1. Molecular and Cellular Biology. 16: 810-7. PMID 8622682  1
1996 Burke TW, Kadonaga JT. Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters. Genes & Development. 10: 711-24. PMID 8598298  1
1996 Pazin MJ, Sheridan PL, Cannon K, Cao Z, Keck JG, Kadonaga JT, Jones KA. NF-kappa B-mediated chromatin reconfiguration and transcriptional activation of the HIV-1 enhancer in vitro. Genes & Development. 10: 37-49. PMID 8557193  1
1995 Bulger M, Ito T, Kamakaka RT, Kadonaga JT. Assembly of regularly spaced nucleosome arrays by Drosophila chromatin assembly factor 1 and a 56-kDa histone-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 92: 11726-30. PMID 8524837 DOI: 10.1073/pnas.92.25.11726  1
1995 Frank DJ, Tyree CM, George CP, Kadonaga JT. Structure and function of the small subunit of TFIIF (RAP30) from Drosophila melanogaster. The Journal of Biological Chemistry. 270: 6292-7. PMID 7890767 DOI: 10.1074/jbc.270.11.6292  1
1995 Lira-DeVito LM, Burke TW, Kadonaga JT. Structure of the genes encoding transcription factor IIB and TATA box-binding protein from Drosophila melanogaster. Gene. 153: 203-7. PMID 7875589 DOI: 10.1016/0378-1119(94)00764-J  1
1995 George CP, Lira-DeVito LM, Wampler SL, Kadonaga JT. A spectrum of mechanisms for the assembly of the RNA polymerase II transcription preinitiation complex. Molecular and Cellular Biology. 15: 1049-59. PMID 7823920  1
1995 Sheridan PL, Sheline CT, Cannon K, Voz ML, Pazin MJ, Kadonaga JT, Jones KA. Activation of the HIV-1 enhancer by the LEF-1 HMG protein on nucleosome-assembled DNA in vitro. Genes & Development. 9: 2090-104. PMID 7657162  1
1995 Paranjape SM, Krumm A, Kadonaga JT. HMG17 is a chromatin-specific transcriptional coactivator that increases the efficiency of transcription initiation. Genes & Development. 9: 1978-91. PMID 7649479  1
1994 Kamakaka RT, Kaufman PD, Stillman B, Mitsis PG, Kadonaga JT. Simian virus 40 origin- and T-antigen-dependent DNA replication with Drosophila factors in vitro. Molecular and Cellular Biology. 14: 5114-22. PMID 8035793  1
1994 Paranjape SM, Kamakaka RT, Kadonaga JT. Role of chromatin structure in the regulation of transcription by RNA polymerase II. Annual Review of Biochemistry. 63: 265-97. PMID 7979240 DOI: 10.1146/annurev.bi.63.070194.001405  1
1994 Pazin MJ, Kamakaka RT, Kadonaga JT. ATP-dependent nucleosome reconfiguration and transcriptional activation from preassembled chromatin templates. Science (New York, N.Y.). 266: 2007-11. PMID 7801129  1
1994 Kamakaka RT, Kadonaga JT. The soluble nuclear fraction, a highly efficient transcription extract from Drosophila embryos. Methods in Cell Biology. 44: 225-35. PMID 7707954 DOI: 10.1016/S0091-679X(08)60916-4  1
1993 Klucher KM, Sommer M, Kadonaga JT, Spector DH. In vivo and in vitro analysis of transcriptional activation mediated by the human cytomegalovirus major immediate-early proteins. Molecular and Cellular Biology. 13: 1238-50. PMID 8423789  1
1993 Kamakaka RT, Bulger M, Kadonaga JT. Potentiation of RNA polymerase II transcription by Gal4-VP16 during but not after DNA replication and chromatin assembly. Genes & Development. 7: 1779-95. PMID 8370526  1
1993 Croston GE, Kadonaga JT. Role of chromatin structure in the regulation of transcription by RNA polymerase II. Current Opinion in Cell Biology. 5: 417-23. PMID 8352958 DOI: 10.1016/0955-0674(93)90006-C  1
1993 Tyree CM, George CP, Lira-DeVito LM, Wampler SL, Dahmus ME, Zawel L, Kadonaga JT. Identification of a minimal set of proteins that is sufficient for accurate initiation of transcription by RNA polymerase II. Genes & Development. 7: 1254-65. PMID 8319911  1
1993 Kamakaka RT, Kadonaga JT. Biochemical analysis of the role of chromatin structure in the regulation of transcription by RNA polymerase II. Cold Spring Harbor Symposia On Quantitative Biology. 58: 205-12. PMID 7956031  1
1992 Wampler SL, Kadonaga JT. Functional analysis of Drosophila transcription factor IIB. Genes & Development. 6: 1542-52. PMID 1644295  1
1992 Kerrigan LA, Kadonaga JT. Periodic binding of individual core histones to DNA: inadvertent purification of the core histone H2B as a putative enhancer-binding factor. Nucleic Acids Research. 20: 6673-80. PMID 1480489  1
1992 Croston GE, Laybourn PJ, Paranjape SM, Kadonaga JT. Mechanism of transcriptional antirepression by GAL4-VP16. Genes & Development. 6: 2270-81. PMID 1459451  1
1992 Laybourn PJ, Kadonaga JT. Threshold phenomena and long-distance activation of transcription by RNA polymerase II. Science (New York, N.Y.). 257: 1682-5. PMID 1388287  1
1991 Kamakaka RT, Tyree CM, Kadonaga JT. Accurate and efficient RNA polymerase II transcription with a soluble nuclear fraction derived from Drosophila embryos. Proceedings of the National Academy of Sciences of the United States of America. 88: 1024-8. PMID 1992453 DOI: 10.1073/pnas.88.3.1024  1
1991 Kerrigan LA, Croston GE, Lira LM, Kadonaga JT. Sequence-specific transcriptional antirepression of the Drosophila Krüppel gene by the GAGA factor. The Journal of Biological Chemistry. 266: 574-82. PMID 1985916  1
1991 Croston GE, Kerrigan LA, Lira LM, Marshak DR, Kadonaga JT. Sequence-specific antirepression of histone H1-mediated inhibition of basal RNA polymerase II transcription. Science (New York, N.Y.). 251: 643-9. PMID 1899487  1
1991 Croston GE, Lira LM, Kadonaga JT. A general method for purification of H1 histones that are active for repression of basal RNA polymerase II transcription. Protein Expression and Purification. 2: 162-9. PMID 1821786 DOI: 10.1016/1046-5928(91)90066-R  1
1991 Kadonaga JT. Purification of sequence-specific binding proteins by DNA affinity chromatography. Methods in Enzymology. 208: 10-23. PMID 1779831  1
1991 Laybourn PJ, Kadonaga JT. Role of nucleosomal cores and histone H1 in regulation of transcription by RNA polymerase II. Science (New York, N.Y.). 254: 238-45. PMID 1718039  1
1990 Wampler SL, Tyree CM, Kadonaga JT. Fractionation of the general RNA polymerase II transcription factors from Drosophila embryos. The Journal of Biological Chemistry. 265: 21223-31. PMID 2250021  1
1990 Kadonaga JT. Gene transcription: basal and regulated transcription by RNA polymerase II. Current Opinion in Cell Biology. 2: 496-501. PMID 2198898 DOI: 10.1016/0955-0674(90)90133-Y  1
1990 Kadonaga JT. Assembly and disassembly of the Drosophila RNA polymerase II complex during transcription. The Journal of Biological Chemistry. 265: 2624-31. PMID 1689291  1
1988 Kadonaga JT, Courey AJ, Ladika J, Tjian R. Distinct regions of Sp1 modulate DNA binding and transcriptional activation. Science (New York, N.Y.). 242: 1566-70. PMID 3059495  1
1988 Kadonaga JT, Courey AJ, Ladika J, Tjian R. Distinct regions of Sp1 modulate DNA binding and transcriptional activation Science. 242: 1566-1570.  1
1987 Kadonaga JT, Carner KR, Masiarz FR, Tjian R. Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain. Cell. 51: 1079-90. PMID 3319186 DOI: 10.1016/0092-8674(87)90594-0  1
1987 Jones KA, Kadonaga JT, Rosenfeld PJ, Kelly TJ, Tjian R. A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication. Cell. 48: 79-89. PMID 3024847 DOI: 10.1016/0092-8674(87)90358-8  1
1986 Briggs MR, Kadonaga JT, Bell SP, Tjian R. Purification and biochemical characterization of the promoter-specific transcription factor, Sp1. Science (New York, N.Y.). 234: 47-52. PMID 3529394  1
1986 Kadonaga JT, Tjian R. Affinity purification of sequence-specific DNA binding proteins. Proceedings of the National Academy of Sciences of the United States of America. 83: 5889-93. PMID 3461465  1
1986 Ishii S, Kadonaga JT, Tjian R, Brady JN, Merlino GT, Pastan I. Binding of the Sp1 transcription factor by the human Harvey ras1 proto-oncogene promoter. Science (New York, N.Y.). 232: 1410-3. PMID 3012774 DOI: 10.1126/science.3012774  1
1986 Jones KA, Kadonaga JT, Luciw PA, Tjian R. Activation of the AIDS retrovirus promoter by the cellular transcription factor, Sp1. Science (New York, N.Y.). 232: 755-9. PMID 3008338  1
1986 Kadonaga JT, Jones KA, Tjian R. Promoter-specific activation of RNA polymerase II transcription by Sp1 Trends in Biochemical Sciences. 11: 20-23. DOI: 10.1016/0968-0004(86)90226-4  1
1985 Kadonaga JT, Plückthun A, Knowles JR. Signal sequence mutants of beta-lactamase. The Journal of Biological Chemistry. 260: 16192-9. PMID 3905810  1
1985 Kadonaga JT, Knowles JR. A simple and efficient method for chemical mutagenesis of DNA. Nucleic Acids Research. 13: 1733-45. PMID 3889841 DOI: 10.1093/nar/13.5.1733  1
1985 Gidoni D, Kadonaga JT, Barrera-Saldaña H, Takahashi K, Chambon P, Tjian R. Bidirectional SV40 transcription mediated by tandem Sp1 binding interactions. Science (New York, N.Y.). 230: 511-7. PMID 2996137 DOI: 10.1126/science.2996137  1
1984 Frost JW, Bender JL, Kadonaga JT, Knowles JR. Dehydroquinate synthase from Escherichia coli: purification, cloning, and construction of overproducers of the enzyme. Biochemistry. 23: 4470-5. PMID 6386050  1
1984 Kadonaga JT, Gautier AE, Straus DR, Charles AD, Edge MD, Knowles JR. The role of the beta-lactamase signal sequence in the secretion of proteins by Escherichia coli. The Journal of Biological Chemistry. 259: 2149-54. PMID 6365904  1
1983 Kadonaga JT, Knowles JR. Role of mono- and divalent metal cations in the catalysis by yeast aldolase. Biochemistry. 22: 130-6. PMID 6338913  1
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