| Year |
Citation |
Score |
| 2020 |
Gallagher RV, Falster DS, Maitner BS, Salguero-Gómez R, Vandvik V, Pearse WD, Schneider FD, Kattge J, Poelen JH, Madin JS, Ankenbrand MJ, Penone C, Feng X, Adams VM, Alroy J, ... ... Mabee P, et al. Open Science principles for accelerating trait-based science across the Tree of Life. Nature Ecology & Evolution. PMID 32066887 DOI: 10.1038/S41559-020-1109-6 |
0.365 |
|
| 2019 |
Mabee P. Answering Research Questions Using Semantic Traits Biodiversity Information Science and Standards. 3. DOI: 10.3897/BISS.3.37567 |
0.343 |
|
| 2018 |
Jackson LM, Fernando PC, Hanscom JS, Balhoff JP, Mabee PM. Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes. Systematic Biology. PMID 29325126 DOI: 10.1093/Sysbio/Syx098 |
0.308 |
|
| 2017 |
Fernando P, Jackson L, Balhoff J, Zeng E, Mabee P. A generic bioinformatics pipeline to integrate large-scale trait data with large phylogenies F1000research. 6. DOI: 10.7490/F1000Research.1114056.1 |
0.313 |
|
| 2016 |
Dececchi TA, Mabee PM, Blackburn DC. Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices. Plos One. 11: e0155680. PMID 27191170 DOI: 10.1371/Journal.Pone.0155680 |
0.346 |
|
| 2015 |
Thessen AE, Bunker DE, Buttigieg PL, Cooper LD, Dahdul WM, Domisch S, Franz NM, Jaiswal P, Lawrence-Dill CJ, Midford PE, Mungall CJ, Ramírez MJ, Specht CD, Vogt L, Vos RA, ... ... Mabee PM, et al. Emerging semantics to link phenotype and environment. Peerj. 3: e1470. PMID 26713234 DOI: 10.7717/Peerj.1470 |
0.326 |
|
| 2015 |
Edmunds RC, Su B, Balhoff JP, Eames BF, Dahdul WM, Lapp H, Lundberg JG, Vision TJ, Dunham RA, Mabee PM, Westerfield M. Phenoscape: Identifying candidate genes for evolutionary phenotypes. Molecular Biology and Evolution. PMID 26500251 DOI: 10.1093/Molbev/Msv223 |
0.629 |
|
| 2015 |
Manda P, Balhoff JP, Lapp H, Mabee P, Vision TJ. Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution. Genesis (New York, N.Y. : 2000). 53: 561-71. PMID 26220875 DOI: 10.1002/Dvg.22878 |
0.438 |
|
| 2015 |
Dececchi TA, Balhoff JP, Lapp H, Mabee PM. Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies. Systematic Biology. PMID 26018570 DOI: 10.1093/Sysbio/Syv031 |
0.318 |
|
| 2015 |
Dahdul W, Dececchi TA, Ibrahim N, Lapp H, Mabee P. Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy. Database : the Journal of Biological Databases and Curation. 2015: bav040. PMID 25972520 DOI: 10.1093/database/bav040 |
0.348 |
|
| 2015 |
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Mabee P, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033 |
0.641 |
|
| 2015 |
Balhoff J, Manda P, Lapp H, Mabee P, Vision T. Connecting genes with evolutionary knowledge using semantic similarity and ancestral profiles of variation F1000research. 4. DOI: 10.7490/F1000Research.1000199.1 |
0.396 |
|
| 2014 |
Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, Comte A, Dahdul WM, Dececchi TA, Druzinsky RE, Hayamizu TF, Ibrahim N, Lewis SE, Mabee PM, Niknejad A, et al. Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. Journal of Biomedical Semantics. 5: 21. PMID 25009735 DOI: 10.1186/2041-1480-5-21 |
0.379 |
|
| 2014 |
Balhoff J, Dececchi A, Lapp H, Mabee P. Synthetic morphological supermatrices: revealing unknown knowns and reducing missing data F1000research. 5. DOI: 10.7490/F1000Research.1095873.1 |
0.307 |
|
| 2013 |
Midford PE, Dececchi TA, Balhoff JP, Dahdul WM, Ibrahim N, Lapp H, Lundberg JG, Mabee PM, Sereno PC, Westerfield M, Vision TJ, Blackburn DC. The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. Journal of Biomedical Semantics. 4: 34. PMID 24267744 DOI: 10.1186/2041-1480-4-34 |
0.658 |
|
| 2013 |
Druzinsky R, Mungall C, Haendel M, Lapp H, Mabee P. What is an anatomy ontology? Anatomical Record (Hoboken, N.J. : 2007). 296: 1797-9. PMID 24127438 DOI: 10.1002/Ar.22805 |
0.372 |
|
| 2013 |
Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, et al. An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database : the Journal of Biological Databases and Curation. 2013: bas056. PMID 23327936 DOI: 10.1093/Database/Bas056 |
0.303 |
|
| 2012 |
Mabee P, Deans A, Huala E, Lewis SE. Phenotype Ontology Research Coordination Network meeting report: creating a community network for comparing and leveraging phenotype-genotype knowledge across species. Standards in Genomic Sciences. 6: 440-3. PMID 23409218 DOI: 10.4056/Sigs.2926219 |
0.332 |
|
| 2012 |
Dahdul WM, Balhoff JP, Blackburn DC, Diehl AD, Haendel MA, Hall BK, Lapp H, Lundberg JG, Mungall CJ, Ringwald M, Segerdell E, Van Slyke CE, Vickaryous MK, Westerfield M, Mabee PM. A unified anatomy ontology of the vertebrate skeletal system. Plos One. 7: e51070. PMID 23251424 DOI: 10.1371/Journal.Pone.0051070 |
0.739 |
|
| 2010 |
Dahdul WM, Lundberg JG, Midford PE, Balhoff JP, Lapp H, Vision TJ, Haendel MA, Westerfield M, Mabee PM. The teleost anatomy ontology: anatomical representation for the genomics age. Systematic Biology. 59: 369-83. PMID 20547776 DOI: 10.1093/Sysbio/Syq013 |
0.67 |
|
| 2010 |
Dahdul WM, Balhoff JP, Engeman J, Grande T, Hilton EJ, Kothari C, Lapp H, Lundberg JG, Midford PE, Vision TJ, Westerfield M, Mabee PM. Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature. Plos One. 5: e10708. PMID 20505755 DOI: 10.1371/Journal.Pone.0010708 |
0.669 |
|
| 2010 |
Balhoff JP, Dahdul WM, Kothari CR, Lapp H, Lundberg JG, Mabee P, Midford PE, Westerfield M, Vision TJ. Phenex: ontological annotation of phenotypic diversity. Plos One. 5: e10500. PMID 20463926 DOI: 10.1371/Journal.Pone.0010500 |
0.676 |
|
| 2010 |
Midford PE, Balhoff JP, Dahdul W, Kothari CR, Lapp H, Lundberg J, Mabee P, Westerfield M. The Teleost Taxonomy Ontology Nature Precedings. DOI: 10.1038/Npre.2010.4629.1 |
0.629 |
|
| 2009 |
Midford P, Mabee P, Vision T, Lapp H, Balhoff J, Dahdul W, Kothari C, Lundberg J, Westerfield M. Phenoscape: Ontologies for Large Multi-species Phenotype Datasets Nature Precedings. DOI: 10.1038/Npre.2009.3594.1 |
0.579 |
|
| 2007 |
Crotwell PL, Mabee PM. Gene expression patterns underlying proximal-distal skeletal segmentation in late-stage zebrafish, Danio rerio. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 236: 3111-28. PMID 17948314 DOI: 10.1002/Dvdy.21352 |
0.714 |
|
| 2007 |
Mabee PM, Arratia G, Coburn M, Haendel M, Hilton EJ, Lundberg JG, Mayden RL, Rios N, Westerfield M. Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 308: 655-68. PMID 17599725 DOI: 10.1002/Jez.B.21181 |
0.673 |
|
| 2007 |
Mabee PM, Ashburner M, Cronk Q, Gkoutos GV, Haendel M, Segerdell E, Mungall C, Westerfield M. Phenotype ontologies: the bridge between genomics and evolution. Trends in Ecology & Evolution. 22: 345-50. PMID 17416439 DOI: 10.1016/J.Tree.2007.03.013 |
0.331 |
|
| 2004 |
Crotwell PL, Sommervold AR, Mabee PM. Expression of bmp2a and bmp2b in late-stage zebrafish median fin development. Gene Expression Patterns : Gep. 5: 291-6. PMID 15567728 DOI: 10.1016/J.Modgep.2004.07.001 |
0.704 |
|
| 2003 |
Bird NC, Mabee PM. Developmental morphology of the axial skeleton of the zebrafish, Danio rerio (Ostariophysi: Cyprinidae). Developmental Dynamics : An Official Publication of the American Association of Anatomists. 228: 337-57. PMID 14579374 DOI: 10.1002/Dvdy.10387 |
0.36 |
|
| 2002 |
Mabee PM, Crotwell PL, Bird NC, Burke AC. Evolution of median fin modules in the axial skeleton of fishes. The Journal of Experimental Zoology. 294: 77-90. PMID 12210109 DOI: 10.1002/Jez.10076 |
0.718 |
|
| 2002 |
MABEE P. Thinking about Developmental Evolution Bioscience. 52: 1043. DOI: 10.1641/0006-3568(2002)052[1043:Tade]2.0.Co;2 |
0.357 |
|
| 2001 |
Crotwell PL, Clark TG, Mabee PM. Gdf5 is expressed in the developing skeleton of median fins of late-stage zebrafish, Danio rerio. Development Genes and Evolution. 211: 555-8. PMID 11862461 DOI: 10.1007/S00427-001-0186-Z |
0.707 |
|
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