| Year |
Citation |
Score |
| 2024 |
Galindo-Trigo S, Bågman AM, Ishida T, Sawa S, Brady SM, Butenko MA. Dissection of the IDA promoter identifies WRKY transcription factors as abscission regulators in Arabidopsis. Journal of Experimental Botany. PMID 38294133 DOI: 10.1093/jxb/erae014 |
0.84 |
|
| 2024 |
Cantó-Pastor A, Kajala K, Shaar-Moshe L, Manzano C, Timilsena P, De Bellis D, Gray S, Holbein J, Yang H, Mohammad S, Nirmal N, Suresh K, Ursache R, Mason GA, Gouran M, ... ... Brady SM, et al. A suberized exodermis is required for tomato drought tolerance. Nature Plants. PMID 38168610 DOI: 10.1038/s41477-023-01567-x |
0.834 |
|
| 2023 |
Bennett MJ, Brady SM, Dinneny JR, Helariutta Y, Sozzani R. Philip N. Benfey (1953-2023). Developmental Cell. 58: 2413-2415. PMID 37989080 DOI: 10.1016/j.devcel.2023.10.013 |
0.533 |
|
| 2022 |
Shaar-Moshe L, Brady SM. SHORT-ROOT and SCARECROW homologs regulate patterning of diverse cell types within and between species. The New Phytologist. PMID 36457304 DOI: 10.1111/nph.18654 |
0.378 |
|
| 2022 |
Nicolas A, Maugarny-Calès A, Adroher B, Chelysheva L, Li Y, Burguet J, Bågman AM, Smit ME, Brady SM, Li Y, Laufs P. De novo stem cell establishment in meristems requires repression of organ boundary cell fate. The Plant Cell. PMID 36029254 DOI: 10.1093/plcell/koac269 |
0.809 |
|
| 2022 |
Reynoso MA, Borowsky AT, Pauluzzi GC, Yeung E, Zhang J, Formentin E, Velasco J, Cabanlit S, Duvenjian C, Prior MJ, Akmakjian GZ, Deal RB, Sinha NR, Brady SM, Girke T, et al. Gene regulatory networks shape developmental plasticity of root cell types under water extremes in rice. Developmental Cell. 57: 1177-1192.e6. PMID 35504287 DOI: 10.1016/j.devcel.2022.04.013 |
0.382 |
|
| 2022 |
Shaar-Moshe L, Brady SM. Forming roots from shoot. Science (New York, N.Y.). 375: 974-975. PMID 35239389 DOI: 10.1126/science.abo2170 |
0.312 |
|
| 2021 |
Tang M, Li B, Zhou X, Bolt T, Li JJ, Cruz N, Gaudinier A, Ngo R, Clark-Wiest C, Kliebenstein DJ, Brady SM. A genome-scale TF-DNA interaction network of transcriptional regulation of Arabidopsis primary and specialized metabolism. Molecular Systems Biology. 17: e10625. PMID 34816587 DOI: 10.15252/msb.202110625 |
0.813 |
|
| 2021 |
Schmitz RJ, Marand AP, Zhang X, Mosher RA, Turck F, Chen X, Axtell MJ, Zhong X, Brady SM, Megraw M, Meyers BC. Quality control and evaluation of plant epigenomics data. The Plant Cell. PMID 34648025 DOI: 10.1093/plcell/koab255 |
0.313 |
|
| 2021 |
Kajala K, Gouran M, Shaar-Moshe L, Mason GA, Rodriguez-Medina J, Kawa D, Pauluzzi G, Reynoso M, Canto-Pastor A, Manzano C, Lau V, Artur MAS, West DA, Gray SB, Borowsky AT, ... ... Brady SM, et al. Innovation, conservation, and repurposing of gene function in root cell type development. Cell. 184: 5070. PMID 34534466 DOI: 10.1016/j.cell.2021.08.032 |
0.799 |
|
| 2021 |
González-Grandío E, Demirer GS, Ma W, Brady S, Landry MP. A Ratiometric Dual Color Luciferase Reporter for Fast Characterization of Transcriptional Regulatory Elements in Plants. Acs Synthetic Biology. PMID 34520169 DOI: 10.1021/acssynbio.1c00248 |
0.367 |
|
| 2021 |
Cole B, Bergmann D, Blaby-Haas CE, Blaby IK, Bouchard KE, Brady SM, Ciobanu D, Coleman-Derr D, Leiboff S, Mortimer JC, Nobori T, Rhee SY, Schmutz J, Simmons BA, Singh AK, et al. Plant single-cell solutions for energy and the environment. Communications Biology. 4: 962. PMID 34385583 DOI: 10.1038/s42003-021-02477-4 |
0.302 |
|
| 2021 |
Kajala K, Gouran M, Shaar-Moshe L, Mason GA, Rodriguez-Medina J, Kawa D, Pauluzzi G, Reynoso M, Canto-Pastor A, Manzano C, Lau V, Artur MAS, West DA, Gray SB, Borowsky AT, ... ... Brady SM, et al. Innovation, conservation, and repurposing of gene function in root cell type development. Cell. PMID 34010619 DOI: 10.1016/j.cell.2021.04.024 |
0.839 |
|
| 2021 |
Friesner J, Colón-Carmona A, Schnoes AM, Stepanova A, Mason GA, Macintosh GC, Ullah H, Baxter I, Callis J, Sierra-Cajas K, Elliott K, Haswell ES, Zavala ME, Wildermuth M, Williams M, ... ... Brady S, et al. Broadening the impact of plant science through innovative, integrative, and inclusive outreach. Plant Direct. 5: e00316. PMID 33870032 DOI: 10.1002/pld3.316 |
0.767 |
|
| 2020 |
Provart NJ, Brady SM, Parry G, Schmitz RJ, Queitsch C, Bonetta D, Waese J, Schneeberger K, Loraine AE. Anno genominis XX: 20 years of Arabidopsis genomics. The Plant Cell. PMID 33793861 DOI: 10.1093/plcell/koaa038 |
0.725 |
|
| 2020 |
Truskina J, Han J, Chrysanthou E, Galvan-Ampudia CS, Lainé S, Brunoud G, Macé J, Bellows S, Legrand J, Bågman AM, Smit ME, Smetana O, Stigliani A, Porco S, Bennett MJ, ... ... Brady SM, et al. Publisher Correction: A network of transcriptional repressors modulates auxin responses. Nature. PMID 33361820 DOI: 10.1038/s41586-020-03066-x |
0.796 |
|
| 2020 |
Dickinson PJ, Kneřová J, Szecówka M, Stevenson SR, Burgess SJ, Mulvey H, Bågman AM, Gaudinier A, Brady SM, Hibberd JM. A bipartite transcription factor module controlling expression in the bundle sheath of Arabidopsis thaliana. Nature Plants. PMID 33230313 DOI: 10.1038/s41477-020-00805-w |
0.819 |
|
| 2020 |
Truskina J, Han J, Chrysanthou E, Galvan-Ampudia CS, Lainé S, Brunoud G, Macé J, Bellows S, Legrand J, Bågman AM, Smit ME, Smetana O, Stigliani A, Porco S, Bennett MJ, ... ... Brady SM, et al. A network of transcriptional repressors modulates auxin responses. Nature. PMID 33208947 DOI: 10.1038/s41586-020-2940-2 |
0.846 |
|
| 2020 |
Fernández-Calvo P, Iñigo S, Glauser G, Vanden Bossche R, Tang M, Li B, De Clercq R, Nagels Durand A, Eeckhout D, Gevaert K, De Jaeger G, Brady SM, Kliebenstein DJ, Pauwels L, Goossens A, et al. FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes. The New Phytologist. PMID 32266972 DOI: 10.1111/Nph.16586 |
0.838 |
|
| 2020 |
Smit ME, Llavata-Peris CI, Roosjen M, van Beijnum H, Novikova D, Levitsky V, Sevilem I, Roszak P, Slane D, Jürgens G, Mironova V, Brady SM, Weijers D. Specification and regulation of vascular tissue identity in the embryo. Development (Cambridge, England). PMID 32198154 DOI: 10.1242/Dev.186130 |
0.32 |
|
| 2019 |
Li B, Tang M, Caseys C, Nelson A, Zhou M, Zhou X, Brady SM, Kliebenstein DJ. Epistatic Transcription Factor Networks Differentially Modulate Arabidopsis Growth and Defense. Genetics. PMID 31852726 DOI: 10.1534/Genetics.119.302996 |
0.793 |
|
| 2019 |
Smit M, McGregor S, Sun H, Gough C, Bågman AM, Soyars CL, Kroon JTM, Gaudinier A, Williams CJ, Yang X, Nimchuk ZL, Weijers D, Turner SR, Brady SM, Etchells P. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. The Plant Cell. PMID 31806676 DOI: 10.1105/Tpc.19.00562 |
0.807 |
|
| 2019 |
Gray SB, Rodriguez-Medina J, Rusoff S, Toal TW, Kajala K, Runcie D, Brady SM. Translational regulation contributes to the elevated CO response in two Solanum species. The Plant Journal : For Cell and Molecular Biology. PMID 31797460 DOI: 10.1111/Tpj.14632 |
0.788 |
|
| 2019 |
Reynoso MA, Kajala K, Bajic M, West DA, Pauluzzi G, Yao AI, Hatch K, Zumstein K, Woodhouse M, Rodriguez-Medina J, Sinha N, Brady SM, Deal RB, Bailey-Serres J. Evolutionary flexibility in flooding response circuitry in angiosperms. Science (New York, N.Y.). 365: 1291-1295. PMID 31604238 DOI: 10.1126/Science.Aax8862 |
0.765 |
|
| 2019 |
Kajala K, Walker KL, Mitchell GS, Krämer U, Cherry SR, Brady SM. Real-time whole-plant dynamics of heavy metal transport in and by gamma-ray imaging. Plant Direct. 3: e00131. PMID 31309170 DOI: 10.1002/pld3.131 |
0.723 |
|
| 2019 |
Turco GM, Rodriguez-Medina J, Siebert S, Han D, Valderrama-Gómez MÁ, Vahldick H, Shulse CN, Cole BJ, Juliano CE, Dickel DE, Savageau MA, Brady SM. Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation. Cell Reports. 28: 342-351.e4. PMID 31291572 DOI: 10.1016/J.Celrep.2019.06.041 |
0.824 |
|
| 2019 |
Falter-Braun P, Brady S, Gutiérrez RA, Coruzzi GM, Krouk G. iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community. Molecular Plant. 12: 727-730. PMID 31125688 DOI: 10.1016/J.Molp.2019.05.005 |
0.351 |
|
| 2019 |
Telléz-Robledo B, Manzano C, Saez A, Navarro-Neila S, Silva-Navas J, de Lorenzo L, González-García MP, Toribio R, Hunt AG, Baigorri R, Casimiro I, Brady SM, Castellano MM, Del Pozo JC. The polyadenylation factor FIP1 is important for plant development and root responses to abiotic stresses. The Plant Journal : For Cell and Molecular Biology. PMID 31111599 DOI: 10.1111/Tpj.14416 |
0.33 |
|
| 2019 |
Shulse CN, Cole BJ, Ciobanu D, Lin J, Yoshinaga Y, Gouran M, Turco GM, Zhu Y, O'Malley RC, Brady SM, Dickel DE. High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types. Cell Reports. 27: 2241-2247.e4. PMID 31091459 DOI: 10.1016/J.Celrep.2019.04.054 |
0.832 |
|
| 2019 |
Rodriguez-Villalon A, Brady SM. Single cell RNA sequencing and its promise in reconstructing plant vascular cell lineages. Current Opinion in Plant Biology. 48: 47-56. PMID 31071514 DOI: 10.1016/J.Pbi.2019.04.002 |
0.312 |
|
| 2019 |
Dong S, Lau V, Song R, Ierullo M, Esteban E, Wu Y, Sivieng T, Nahal-Bose HK, Gaudinier A, Pasha A, Oughtred R, Dolinski K, Tyers M, Brady SM, Grene R, et al. Proteome-Wide, Structure-Based Prediction of Protein-protein Interactions / New Molecular Interactions Viewer. Plant Physiology. PMID 30679268 DOI: 10.1104/Pp.18.01216 |
0.73 |
|
| 2019 |
Hussey S, Grima-Pettenati J, Myburg AA, Mizrachi E, Brady SM, Yoshikuni Y, Deutsch S. A standardized synthetic Eucalyptus transcription factor and promoter panel for re-engineering secondary cell wall regulation in biomass and bioenergy crops. Acs Synthetic Biology. PMID 30605615 DOI: 10.1021/Acssynbio.8B00440 |
0.374 |
|
| 2018 |
Reynoso MA, Pauluzzi GC, Cabanlit S, Velasco J, Bazin J, Deal R, Brady S, Sinha N, Bailey-Serres J, Kajala K. Isolation of Nuclei in Tagged Cell Types (INTACT), RNA Extraction and Ribosomal RNA Degradation to Prepare Material for RNA-Seq. Bio-Protocol. 8: e2458. PMID 34286007 DOI: 10.21769/BioProtoc.2458 |
0.701 |
|
| 2018 |
Gaudinier A, Rodriguez-Medina J, Zhang L, Olson A, Liseron-Monfils C, Bågman AM, Foret J, Abbitt S, Tang M, Li B, Runcie DE, Kliebenstein DJ, Shen B, Frank MJ, Ware D, ... Brady SM, et al. Transcriptional regulation of nitrogen-associated metabolism and growth. Nature. PMID 30356219 DOI: 10.1038/S41586-018-0656-3 |
0.812 |
|
| 2018 |
Toal TW, Ron M, Gibson D, Kajala K, Splitt B, Johnson LS, Miller ND, Slovak R, Gaudinier A, Patel R, de Lucas M, Provart NJ, Spalding EP, Busch W, Kliebenstein DJ, ... Brady SM, et al. Regulation of Root Angle and Gravitropism. G3 (Bethesda, Md.). PMID 30322904 DOI: 10.1534/G3.118.200540 |
0.79 |
|
| 2018 |
Sakamoto S, Somssich M, Nakata MT, Unda F, Atsuzawa K, Kaneko Y, Wang T, Bågman AM, Gaudinier A, Yoshida K, Brady SM, Mansfield SD, Persson S, Mitsuda N. Complete substitution of a secondary cell wall with a primary cell wall in Arabidopsis. Nature Plants. 4: 777-783. PMID 30287954 DOI: 10.1038/S41477-018-0260-4 |
0.797 |
|
| 2018 |
Ikeuchi M, Shibata M, Rymen B, Iwase A, Bågman AM, Watt L, Coleman D, Favero DS, Takahashi T, Ahnert SE, Brady SM, Sugimoto K. A Gene Regulatory Network for Cellular Reprogramming in Plant Regeneration. Plant & Cell Physiology. PMID 29462363 DOI: 10.1093/pcp/pcy013 |
0.849 |
|
| 2018 |
Li B, Tang M, Nelson A, Caligagan H, Zhou X, Wiest CC, Ngo R, Brady SM, Kliebenstein DJ. Network-guided Discovery of Extensive Epistasis Between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. The Plant Cell. PMID 29317470 DOI: 10.1105/Tpc.17.00805 |
0.802 |
|
| 2018 |
Reynoso M, Pauluzzi G, Cabanlit S, Velasco J, Bazin J, Deal R, Brady S, Sinha N, Bailey-Serres J, Kajala K. Isolation of Nuclei in Tagged Cell Types (INTACT), RNA Extraction and Ribosomal RNA Degradation to Prepare Material for RNA-Seq Bio-Protocol. 8. DOI: 10.21769/BIOPROTOC.2458 |
0.672 |
|
| 2017 |
Maher KA, Bajic M, Kajala K, Reynoso M, Pauluzzi G, West D, Zumstein K, Woodhouse M, Bubb KL, Dorrity MW, Queitsch C, Bailey-Serres J, Sinha N, Brady SM, Deal R. Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules. The Plant Cell. PMID 29229750 DOI: 10.1105/Tpc.17.00581 |
0.787 |
|
| 2017 |
Johnson RA, Conklin P, Tjahjadi M, Missirian V, Toal T, Brady SM, Britt AB. SUPPRESSOR OF GAMMA RESPONSE 1 links DNA damage response to organ regeneration. Plant Physiology. PMID 29222192 DOI: 10.1104/Pp.17.01274 |
0.792 |
|
| 2017 |
Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, ... ... Brady SM, et al. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiology. 175: 1499-1509. PMID 29208732 DOI: 10.1104/Pp.17.01490 |
0.76 |
|
| 2017 |
Reynoso M, Pauluzzi G, Kajala K, Cabanlit S, Velasco J, Bazin J, Deal R, Sinha N, Brady SM, Bailey-Serres J. Nuclear transcriptomes at high resolution using retooled INTACT. Plant Physiology. PMID 28956755 DOI: 10.1104/Pp.17.00688 |
0.742 |
|
| 2017 |
Gaudinier A, Tang M, Bågman AM, Brady SM. Identification of Protein-DNA Interactions Using Enhanced Yeast One-Hybrid Assays and a Semiautomated Approach. Methods in Molecular Biology (Clifton, N.J.). 1610: 187-215. PMID 28439865 DOI: 10.1007/978-1-4939-7003-2_13 |
0.788 |
|
| 2017 |
Turco GM, Kajala K, Kunde-Ramamoorthy G, Ngan CY, Olson A, Deshphande S, Tolkunov D, Waring B, Stelpflug S, Klein P, Schmutz J, Kaeppler S, Ware D, Wei CL, Etchells JP, ... Brady SM, et al. DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor. The New Phytologist. PMID 28186631 DOI: 10.1111/Nph.14448 |
0.799 |
|
| 2016 |
Sparks EE, Drapek C, Gaudinier A, Li S, Ansariola M, Shen N, Hennacy JH, Zhang J, Turco G, Petricka JJ, Foret J, Hartemink AJ, Gordân R, Megraw M, Brady SM, et al. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Developmental Cell. 39: 585-596. PMID 27923776 DOI: 10.1016/J.Devcel.2016.09.031 |
0.806 |
|
| 2016 |
de Lucas M, Pu L, Turco GM, Gaudinier A, Marao AK, Harashima H, Kim D, Ron M, Sugimoto K, Roudier FM, Brady SM. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell Type Proliferation and Differentiation. The Plant Cell. PMID 27650334 DOI: 10.1105/Tpc.15.00744 |
0.825 |
|
| 2016 |
Porco S, Larrieu A, Du Y, Gaudinier A, Goh T, Swarup K, Swarup R, Kuempers B, Bishopp A, Lavenus J, Casimiro I, Hill K, Benkova E, Fukaki H, Brady SM, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulating auxin influx carrier LAX3. Development (Cambridge, England). PMID 27578783 DOI: 10.1242/Dev.136283 |
0.835 |
|
| 2016 |
Murphy E, Vu LD, Van den Broeck L, Lin Z, Ramakrishna P, van de Cotte B, Gaudinier A, Goh T, Slane D, Beeckman T, Inzé D, Brady SM, Fukaki H, De Smet I. RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation. Journal of Experimental Botany. 67: 4863-75. PMID 27521602 DOI: 10.1093/Jxb/Erw281 |
0.809 |
|
| 2016 |
Gray SB, Brady SM. Plant Developmental Responses to Climate Change. Developmental Biology. PMID 27521050 DOI: 10.1016/j.ydbio.2016.07.023 |
0.71 |
|
| 2016 |
Toal T, Burkart-Waco D, Howell T, Ron M, Kuppu S, Britt AB, Chetelat RT, Brady SM. Indel Group in Genomes (IGG) Molecular Genetic Markers. Plant Physiology. PMID 27436831 DOI: 10.1104/Pp.16.00354 |
0.748 |
|
| 2016 |
Gaudinier A, Brady SM. Mapping Transcriptional Networks in Plants: Data-Driven Discovery of Novel Biological Mechanisms. Annual Review of Plant Biology. 67: 575-94. PMID 27128468 DOI: 10.1146/annurev-arplant-043015-112205 |
0.807 |
|
| 2015 |
Ikeuchi M, Iwase A, Rymen B, Harashima H, Shibata M, Ohnuma M, Breuer C, Morao AK, de Lucas M, De Veylder L, Goodrich J, Brady SM, Roudier F, Sugimoto K. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nature Plants. 1: 15089. PMID 27250255 DOI: 10.1038/nplants.2015.89 |
0.399 |
|
| 2015 |
Provart NJ, Alonso J, Assmann SM, Bergmann D, Brady SM, Brkljacic J, Browse J, Chapple C, Colot V, Cutler S, Dangl J, Ehrhardt D, Friesner JD, Frommer WB, Grotewold E, et al. 50 years of Arabidopsis research: highlights and future directions. The New Phytologist. PMID 26465351 DOI: 10.1111/Nph.13687 |
0.719 |
|
| 2015 |
Etchells JP, Smit ME, Gaudinier A, Williams CJ, Brady SM. A brief history of the TDIF-PXY signalling module: balancing meristem identity and differentiation during vascular development. The New Phytologist. PMID 26414535 DOI: 10.1111/nph.13642 |
0.773 |
|
| 2015 |
Koryachko A, Matthiadis A, Muhammad D, Foret J, Brady SM, Ducoste JJ, Tuck J, Long TA, Williams C. Clustering and Differential Alignment Algorithm: Identification of Early Stage Regulators in the Arabidopsis thaliana Iron Deficiency Response. Plos One. 10: e0136591. PMID 26317202 DOI: 10.1371/Journal.Pone.0136591 |
0.796 |
|
| 2015 |
Brady SM, Burow M, Busch W, Carlborg Ö, Denby KJ, Glazebrook J, Hamilton ES, Harmer SL, Haswell ES, Maloof JN, Springer NM, Kliebenstein DJ. Reassess the t Test: Interact with All Your Data via ANOVA. The Plant Cell. 27: 2088-94. PMID 26220933 DOI: 10.1105/Tpc.15.00238 |
0.764 |
|
| 2015 |
Spiegelman Z, Ham BK, Zhang Z, Toal TW, Brady SM, Zheng Y, Fei Z, Lucas WJ, Wolf S. A tomato phloem-mobile protein regulates the shoot-to-root ratio by mediating the auxin response in distant organs. The Plant Journal : For Cell and Molecular Biology. PMID 26173789 DOI: 10.1111/Tpj.12932 |
0.809 |
|
| 2014 |
Liu Y, You S, Taylor-Teeples M, Li WL, Schuetz M, Brady SM, Douglas CJ. BEL1-LIKE HOMEODOMAIN6 and KNOTTED ARABIDOPSIS THALIANA7 interact and regulate secondary cell wall formation via repression of REVOLUTA. The Plant Cell. 26: 4843-61. PMID 25490916 DOI: 10.1105/Tpc.114.128322 |
0.331 |
|
| 2014 |
Kajala K, Coil DA, Brady SM. Draft Genome Sequence of Rhizobium rhizogenes Strain ATCC 15834. Genome Announcements. 2. PMID 25359916 DOI: 10.1128/Genomea.01108-14 |
0.703 |
|
| 2014 |
Li B, Gaudinier A, Tang M, Taylor-Teeples M, Nham NT, Ghaffari C, Benson DS, Steinmann M, Gray JA, Brady SM, Kliebenstein DJ. Promoter-based integration in plant defense regulation. Plant Physiology. 166: 1803-20. PMID 25352272 DOI: 10.1104/Pp.114.248716 |
0.834 |
|
| 2014 |
Ron M, Kajala K, Pauluzzi G, Wang D, Reynoso MA, Zumstein K, Garcha J, Winte S, Masson H, Inagaki S, Federici F, Sinha N, Deal RB, Bailey-Serres J, Brady SM. Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model. Plant Physiology. 166: 455-69. PMID 24868032 DOI: 10.1104/Pp.114.239392 |
0.774 |
|
| 2014 |
Kajala K, Ramakrishna P, Fisher A, C. Bergmann D, De Smet I, Sozzani R, Weijers D, Brady SM. Omics and modelling approaches for understanding regulation of asymmetric cell divisions in arabidopsis and other angiosperm plants Annals of Botany. 113: 1083-1105. PMID 24825294 DOI: 10.1093/Aob/Mcu065 |
0.828 |
|
| 2014 |
Ron M, Kajala K, Pauluzzui G, Wang D, Reynoso MA, Zumstein K, Garcha J, Winte S, Masson H, Inagaki S, Federici F, Sinha N, Deal R, Bailey-Serres J, Brady S. A rapid method for translating molecular tools for crop species F1000research. 5. DOI: 10.7490/F1000Research.1097119.1 |
0.702 |
|
| 2013 |
Brady SM. When the time is ripe. Elife. 2: e00958. PMID 23840932 DOI: 10.7554/eLife.00958 |
0.346 |
|
| 2013 |
Ron M, Dorrity MW, de Lucas M, Toal T, Hernandez RI, Little SA, Maloof JN, Kliebenstein DJ, Brady SM. Identification of novel loci regulating interspecific variation in root morphology and cellular development in tomato. Plant Physiology. 162: 755-68. PMID 23575417 DOI: 10.1104/Pp.113.217802 |
0.818 |
|
| 2013 |
Moussaieff A, Rogachev I, Brodsky L, Malitsky S, Toal TW, Belcher H, Yativ M, Brady SM, Benfey PN, Aharoni A. High-resolution metabolic mapping of cell types in plant roots. Proceedings of the National Academy of Sciences of the United States of America. 110: E1232-41. PMID 23476065 DOI: 10.1073/Pnas.1302019110 |
0.814 |
|
| 2013 |
Lucas WJ, Groover A, Lichtenberger R, Furuta K, Yadav SR, Helariutta Y, He XQ, Fukuda H, Kang J, Brady SM, Patrick JW, Sperry J, Yoshida A, López-Millán AF, Grusak MA, et al. The plant vascular system: evolution, development and functions. Journal of Integrative Plant Biology. 55: 294-388. PMID 23462277 DOI: 10.1111/Jipb.12041 |
0.636 |
|
| 2013 |
Belmonte MF, Kirkbride RC, Stone SL, Pelletier JM, Bui AQ, Yeung EC, Hashimoto M, Fei J, Harada CM, Munoz MD, Le BH, Drews GN, Brady SM, Goldberg RB, Harada JJ. Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed. Proceedings of the National Academy of Sciences of the United States of America. 110: E435-44. PMID 23319655 DOI: 10.1073/Pnas.1222061110 |
0.324 |
|
| 2013 |
De Lucas M, Brady SM. Gene regulatory networks in the Arabidopsis root. Current Opinion in Plant Biology. 16: 50-5. PMID 23196272 DOI: 10.1016/j.pbi.2012.10.007 |
0.345 |
|
| 2013 |
El-Showk S, Taylor-Teeples M, Helariutta Y, Brady SM. Gene Regulatory Networks during Arabidopsis Root Vascular Development International Journal of Plant Sciences. 174: 1090-1097. DOI: 10.1086/671449 |
0.69 |
|
| 2012 |
Bassel GW, Gaudinier A, Brady SM, Hennig L, Rhee SY, De Smet I. Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. The Plant Cell. 24: 3859-75. PMID 23110892 DOI: 10.1105/Tpc.112.100776 |
0.783 |
|
| 2011 |
Gaudinier A, Zhang L, Reece-Hoyes JS, Taylor-Teeples M, Pu L, Liu Z, Breton G, Pruneda-Paz JL, Kim D, Kay SA, Walhout AJ, Ware D, Brady SM. Enhanced Y1H assays for Arabidopsis. Nature Methods. 8: 1053-5. PMID 22037706 DOI: 10.1038/Nmeth.1750 |
0.799 |
|
| 2011 |
Taylor-Teeples M, Ron M, Brady SM. Novel biological insights revealed from cell type-specific expression profiling. Current Opinion in Plant Biology. 14: 601-7. PMID 21704550 DOI: 10.1016/j.pbi.2011.05.007 |
0.352 |
|
| 2011 |
Brady SM, Zhang L, Megraw M, Martinez NJ, Jiang E, Yi CS, Liu W, Zeng A, Taylor-Teeples M, Kim D, Ahnert S, Ohler U, Ware D, Walhout AJ, Benfey PN. A stele-enriched gene regulatory network in the Arabidopsis root. Molecular Systems Biology. 7: 459. PMID 21245844 DOI: 10.1038/Msb.2010.114 |
0.629 |
|
| 2011 |
Taylor-Teeples M, Gaudinier A, Zhang L, Reece-Hoyes J, Ahnert S, Walhoug M, Ware D, Brady SM. Mapping spatiotemporal gene regulatory networks in the Arabidopsis root stele Developmental Biology. 356: 110. DOI: 10.1016/J.YDBIO.2011.05.035 |
0.767 |
|
| 2010 |
Sozzani R, Cui H, Moreno-Risueno MA, Busch W, Van Norman JM, Vernoux T, Brady SM, Dewitte W, Murray JA, Benfey PN. Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth. Nature. 466: 128-32. PMID 20596025 DOI: 10.1038/Nature09143 |
0.814 |
|
| 2010 |
Orlando DA, Brady SM, Fink TM, Benfey PN, Ahnert SE. Detecting separate time scales in genetic expression data. Bmc Genomics. 11: 381. PMID 20565716 DOI: 10.1186/1471-2164-11-381 |
0.708 |
|
| 2010 |
Pu L, Brady S. Systems biology update: Cell type-specific transcriptional regulatory networks Plant Physiology. 152: 411-419. PMID 19965967 DOI: 10.1104/Pp.109.148668 |
0.482 |
|
| 2009 |
Cartwright DA, Brady SM, Orlando DA, Sturmfels B, Benfey PN. Reconstructing spatiotemporal gene expression data from partial observations. Bioinformatics (Oxford, England). 25: 2581-7. PMID 19608707 DOI: 10.1093/Bioinformatics/Btp437 |
0.758 |
|
| 2009 |
Orlando DA, Brady SM, Koch JD, Dinneny JR, Benfey PN. Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment. Methods in Molecular Biology (Clifton, N.J.). 553: 57-77. PMID 19588101 DOI: 10.1007/978-1-60327-563-7_4 |
0.827 |
|
| 2008 |
Chaudhuri B, Hörmann F, Lalonde S, Brady SM, Orlando DA, Benfey P, Frommer WB. Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips. The Plant Journal : For Cell and Molecular Biology. 56: 948-62. PMID 18702670 DOI: 10.1111/J.1365-313X.2008.03652.X |
0.728 |
|
| 2008 |
Long TA, Brady SM, Benfey PN. Systems approaches to identifying gene regulatory networks in plants. Annual Review of Cell and Developmental Biology. 24: 81-103. PMID 18616425 DOI: 10.1146/Annurev.Cellbio.24.110707.175408 |
0.774 |
|
| 2008 |
Dinneny JR, Long TA, Wang JY, Jung JW, Mace D, Pointer S, Barron C, Brady SM, Schiefelbein J, Benfey PN. Cell identity mediates the response of Arabidopsis roots to abiotic stress. Science (New York, N.Y.). 320: 942-5. PMID 18436742 DOI: 10.1126/Science.1153795 |
0.812 |
|
| 2007 |
Brady SM, Orlando DA, Lee JY, Wang JY, Koch J, Dinneny JR, Mace D, Ohler U, Benfey PN. A high-resolution root spatiotemporal map reveals dominant expression patterns. Science (New York, N.Y.). 318: 801-6. PMID 17975066 DOI: 10.1126/Science.1146265 |
0.827 |
|
| 2007 |
Brady SM, Song S, Dhugga KS, Rafalski JA, Benfey PN. Combining expression and comparative evolutionary analysis. The COBRA gene family. Plant Physiology. 143: 172-87. PMID 17098858 DOI: 10.1104/Pp.106.087262 |
0.56 |
|
| 2006 |
Brady SM, Long TA, Benfey PN. Unraveling the dynamic transcriptome. The Plant Cell. 18: 2101-11. PMID 16968906 DOI: 10.1105/Tpc.105.037572 |
0.763 |
|
| 2006 |
Brady SM, Benfey PN. Additions and corrections: A systems approach to understanding root development Canadian Journal of Botany. 84: 1508. DOI: 10.1139/B06-134 |
0.478 |
|
| 2003 |
Brady SM, Sarkar SF, Bonetta D, McCourt P. The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 34: 67-75. PMID 12662310 DOI: 10.1046/J.1365-313X.2003.01707.X |
0.819 |
|
| 2003 |
Brady SM, McCourt P. Hormone Cross-Talk in Seed Dormancy Journal of Plant Growth Regulation. 22: 25-31. DOI: 10.1007/S00344-003-0018-7 |
0.613 |
|
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