Yukihide Tomari - Publications

Affiliations: 
University of Tokyo, Bunkyō-ku, Tōkyō-to, Japan 

63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Tsuboyama K, Tadakuma H, Tomari Y. Conformational Activation of Argonaute by Distinct yet Coordinated Actions of the Hsp70 and Hsp90 Chaperone Systems. Molecular Cell. 70: 722-729.e4. PMID 29775584 DOI: 10.1016/j.molcel.2018.04.010  0.32
2018 Nishimura T, Nagamori I, Nakatani T, Izumi N, Tomari Y, Kuramochi-Miyagawa S, Nakano T. PNLDC1, mouse pre-piRNA Trimmer, is required for meiotic and post-meiotic male germ cell development. Embo Reports. PMID 29444933 DOI: 10.15252/embr.201744957  0.36
2018 Katsuma S, Kawamoto M, Shoji K, Aizawa T, Kiuchi T, Izumi N, Ogawa M, Mashiko T, Kawasaki H, Sugano S, Tomari Y, Suzuki Y, Iwanaga M. Transcriptome profiling reveals infection strategy of an insect maculavirus. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 29360973 DOI: 10.1093/dnares/dsx056  0.48
2018 Sasaki HM, Tadakuma H, Tomari Y. Single-Molecule Analysis for RISC Assembly and Target Cleavage. Methods in Molecular Biology (Clifton, N.J.). 1680: 145-164. PMID 29030847 DOI: 10.1007/978-1-4939-7339-2_10  0.32
2018 Iwasaki S, Tomari Y. Reconstitution of RNA Interference Machinery. Methods in Molecular Biology (Clifton, N.J.). 1680: 131-143. PMID 29030846 DOI: 10.1007/978-1-4939-7339-2_9  1
2017 Zhang H, Liu K, Izumi N, Huang H, Ding D, Ni Z, Sidhu SS, Chen C, Tomari Y, Min J. Structural basis for arginine methylation-independent recognition of PIWIL1 by TDRD2. Proceedings of the National Academy of Sciences of the United States of America. PMID 29118143 DOI: 10.1073/pnas.1711486114  0.36
2017 Watanabe M, Iwakawa HO, Tadakuma H, Tomari Y. Biochemical and single-molecule analyses of the RNA silencing suppressing activity of CrPV-1A. Nucleic Acids Research. PMID 28977639 DOI: 10.1093/nar/gkx748  0.6
2017 Naruse K, Matsuura-Suzuki E, Watanabe M, Iwasaki S, Tomari Y. In vitro reconstitution of chaperone-mediated human RISC assembly. Rna (New York, N.Y.). PMID 28971854 DOI: 10.1261/rna.063891.117  1
2017 Iwakawa HO, Tomari Y. Silencing messages in a unique way. Nature Plants. 3: 769-770. PMID 28970573 DOI: 10.1038/s41477-017-0028-2  0.6
2017 Tomari Y, Iwakawa HO. In Vitro Analysis of ARGONAUTE-Mediated Target Cleavage and Translational Repression in Plants. Methods in Molecular Biology (Clifton, N.J.). 1640: 55-71. PMID 28608334 DOI: 10.1007/978-1-4939-7165-7_4  0.6
2017 Mishima Y, Tomari Y. Pervasive yet nonuniform contributions of Dcp2 and Cnot7 to maternal mRNA clearance in zebrafish. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 22: 670-678. PMID 28557307 DOI: 10.1111/gtc.12504  1
2017 Baeg K, Iwakawa HO, Tomari Y. The poly(A) tail blocks RDR6 from converting self mRNAs into substrates for gene silencing. Nature Plants. 3: 17036. PMID 28319057 DOI: 10.1038/nplants.2017.36  0.6
2017 Niinuma S, Tomari Y. ATP is dispensable for both miRNA- and Smaug-mediated deadenylation reactions. Rna (New York, N.Y.). 23: 866-871. PMID 28250202 DOI: 10.1261/rna.060764.117  0.4
2016 Niinuma S, Fukaya T, Tomari Y. CCR4 and CAF1 deadenylases have an intrinsic activity to remove the post-poly(A) sequence. Rna (New York, N.Y.). PMID 27484313 DOI: 10.1261/rna.057679.116  1
2016 Mishima Y, Tomari Y. Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish. Molecular Cell. 61: 874-85. PMID 26990990 DOI: 10.1016/j.molcel.2016.02.027  1
2016 Izumi N, Shoji K, Sakaguchi Y, Honda S, Kirino Y, Suzuki T, Katsuma S, Tomari Y. Identification and Functional Analysis of the Pre-piRNA 3' Trimmer in Silkworms. Cell. 164: 962-73. PMID 26919431 DOI: 10.1016/j.cell.2016.01.008  1
2015 Iwakawa HO, Tomari Y. The Functions of MicroRNAs: mRNA Decay and Translational Repression. Trends in Cell Biology. 25: 651-65. PMID 26437588 DOI: 10.1016/j.tcb.2015.07.011  0.6
2015 Kobayashi H, Tomari Y. RISC assembly: Coordination between small RNAs and Argonaute proteins. Biochimica Et Biophysica Acta. PMID 26303205 DOI: 10.1016/j.bbagrm.2015.08.007  1
2015 Yao C, Sasaki HM, Ueda T, Tomari Y, Tadakuma H. Single-Molecule Analysis of the Target Cleavage Reaction by the Drosophila RNAi Enzyme Complex. Molecular Cell. 59: 125-32. PMID 26140368 DOI: 10.1016/j.molcel.2015.05.015  1
2015 Izumi N, Kawaoka S, Yasuhara S, Suzuki Y, Sugano S, Katsuma S, Tomari Y. Corrigendum: Hsp90 facilitates accurate loading of precursor piRNAs into PIWI proteins. Rna (New York, N.Y.). 21: 1217. PMID 25987474  0.48
2015 Iwasaki S, Sasaki HM, Sakaguchi Y, Suzuki T, Tadakuma H, Tomari Y. Defining fundamental steps in the assembly of the Drosophila RNAi enzyme complex. Nature. 521: 533-6. PMID 25822791 DOI: 10.1038/nature14254  1
2014 Wang W, Yoshikawa M, Han BW, Izumi N, Tomari Y, Weng Z, Zamore PD. The initial uridine of primary piRNAs does not create the tenth adenine that Is the hallmark of secondary piRNAs. Molecular Cell. 56: 708-16. PMID 25453759 DOI: 10.1016/j.molcel.2014.10.016  1
2014 Fukaya T, Iwakawa Ho, Tomari Y. MicroRNAs block assembly of eIF4F translation initiation complex in drosophila Molecular Cell. 56: 67-78. PMID 25280104 DOI: 10.1016/j.molcel.2014.09.004  1
2014 Hirose T, Mishima Y, Tomari Y. Elements and machinery of non-coding RNAs: toward their taxonomy. Embo Reports. 15: 489-507. PMID 24731943 DOI: 10.1002/embr.201338390  1
2014 Izumi N, Tomari Y. Diversity of the piRNA pathway for nonself silencing: worm-specific piRNA biogenesis factors. Genes & Development. 28: 665-71. PMID 24696451 DOI: 10.1101/gad.241323.114  0.36
2014 Kawaoka S, Katsuma S, Tomari Y. Making piRNAs in vitro. Methods in Molecular Biology (Clifton, N.J.). 1093: 35-46. PMID 24178555 DOI: 10.1007/978-1-62703-694-8_4  0.48
2013 Iwakawa HO, Tomari Y. Molecular insights into microRNA-mediated translational repression in plants. Molecular Cell. 52: 591-601. PMID 24267452 DOI: 10.1016/j.molcel.2013.10.033  0.6
2013 Yoda M, Cifuentes D, Izumi N, Sakaguchi Y, Suzuki T, Giraldez AJ, Tomari Y. Poly(A)-specific ribonuclease mediates 3'-end trimming of Argonaute2-cleaved precursor microRNAs. Cell Reports. 5: 715-26. PMID 24209750 DOI: 10.1016/j.celrep.2013.09.029  1
2013 Endo Y, Iwakawa HO, Tomari Y. Arabidopsis ARGONAUTE7 selects miR390 through multiple checkpoints during RISC assembly. Embo Reports. 14: 652-8. PMID 23732541 DOI: 10.1038/embor.2013.73  0.6
2013 Izumi N, Kawaoka S, Yasuhara S, Suzuki Y, Sugano S, Katsuma S, Tomari Y. Hsp90 facilitates accurate loading of precursor piRNAs into PIWI proteins. Rna (New York, N.Y.). 19: 896-901. PMID 23681506 DOI: 10.1261/rna.037200.112  0.48
2013 Kawaoka S, Hara K, Shoji K, Kobayashi M, Shimada T, Sugano S, Tomari Y, Suzuki Y, Katsuma S. The comprehensive epigenome map of piRNA clusters Nucleic Acids Research. 41: 1581-1590. PMID 23258708 DOI: 10.1093/nar/gks1274  1
2012 Fukaya T, Tomari Y. MicroRNAs Mediate Gene Silencing via Multiple Different Pathways in Drosophila Molecular Cell. 48: 825-836. PMID 23123195 DOI: 10.1016/j.molcel.2012.09.024  1
2012 Sasaki HM, Tomari Y. The true core of RNA silencing revealed. Nature Structural & Molecular Biology. 19: 657-60. PMID 22767235 DOI: 10.1038/nsmb.2302  0.32
2012 Iwakawa HO, Tajima Y, Taniguchi T, Kaido M, Mise K, Tomari Y, Taniguchi H, Okuno T. Poly(A)-binding protein facilitates translation of an uncapped/nonpolyadenylated viral RNA by binding to the 3' untranslated region. Journal of Virology. 86: 7836-49. PMID 22593149 DOI: 10.1128/JVI.00538-12  0.6
2012 Kwak PB, Tomari Y. The N domain of Argonaute drives duplex unwinding during RISC assembly. Nature Structural & Molecular Biology. 19: 145-51. PMID 22233755 DOI: 10.1038/nsmb.2232  0.6
2012 Kawaoka S, Mitsutake H, Kiuchi T, Kobayashi M, Yoshikawa M, Suzuki Y, Sugano S, Shimada T, Kobayashi J, Tomari Y, Katsuma S. A role for transcription from a piRNA cluster in de novo piRNA production. Rna (New York, N.Y.). 18: 265-73. PMID 22194309 DOI: 10.1261/rna.029777.111  0.48
2011 Fukaya T, Tomari Y. PABP is not essential for microRNA-mediated translational repression and deadenylation in vitro Embo Journal. 30: 4998-5009. PMID 22117217 DOI: 10.1038/emboj.2011.426  1
2011 Kawaoka S, Kadota K, Arai Y, Suzuki Y, Fujii T, Abe H, Yasukochi Y, Mita K, Sugano S, Shimizu K, Tomari Y, Shimada T, Katsuma S. The silkworm W chromosome is a source of female-enriched piRNAs. Rna (New York, N.Y.). 17: 2144-51. PMID 22020973 DOI: 10.1261/rna.027565.111  0.48
2011 Tsutsumi A, Kawamata T, Izumi N, Seitz H, Tomari Y. Recognition of the pre-miRNA structure by Drosophila Dicer-1. Nature Structural & Molecular Biology. 18: 1153-8. PMID 21926993 DOI: 10.1038/nsmb.2125  0.56
2011 Kawaoka S, Izumi N, Katsuma S, Tomari Y. 3' end formation of PIWI-interacting RNAs in vitro. Molecular Cell. 43: 1015-22. PMID 21925389 DOI: 10.1016/j.molcel.2011.07.029  0.48
2011 Kawamata T, Yoda M, Tomari Y. Multilayer checkpoints for microRNA authenticity during RISC assembly Embo Reports. 12: 944-949. PMID 21738221 DOI: 10.1038/embor.2011.128  1
2011 Kawaoka S, Arai Y, Kadota K, Suzuki Y, Hara K, Sugano S, Shimizu K, Tomari Y, Shimada T, Katsuma S. Zygotic amplification of secondary piRNAs during silkworm embryogenesis. Rna (New York, N.Y.). 17: 1401-7. PMID 21628432 DOI: 10.1261/rna.2709411  0.48
2011 Kawamata T, Tomari Y. Native gel analysis for RISC assembly. Methods in Molecular Biology (Clifton, N.J.). 725: 91-105. PMID 21528449 DOI: 10.1007/978-1-61779-046-1_7  0.56
2010 Kwak PB, Iwasaki S, Tomari Y. The microRNA pathway and cancer. Cancer Science. 101: 2309-15. PMID 20726859 DOI: 10.1111/j.1349-7006.2010.01683.x  1
2010 Iwasaki S, Kobayashi M, Yoda M, Sakaguchi Y, Katsuma S, Suzuki T, Tomari Y. Hsc70/Hsp90 chaperone machinery mediates ATP-dependent RISC loading of small RNA duplexes. Molecular Cell. 39: 292-9. PMID 20605501 DOI: 10.1016/j.molcel.2010.05.015  1
2010 Kawamata T, Tomari Y. Making RISC. Trends in Biochemical Sciences. 35: 368-76. PMID 20395147 DOI: 10.1016/j.tibs.2010.03.009  0.56
2010 Yoda M, Kawamata T, Paroo Z, Ye X, Iwasaki S, Liu Q, Tomari Y. ATP-dependent human RISC assembly pathways. Nature Structural & Molecular Biology. 17: 17-23. PMID 19966796 DOI: 10.1038/nsmb.1733  1
2009 Kawamata T, Seitz H, Tomari Y. Structural determinants of miRNAs for RISC loading and slicer-independent unwinding. Nature Structural & Molecular Biology. 16: 953-60. PMID 19684602 DOI: 10.1038/nsmb.1630  0.56
2009 Iwasaki S, Tomari Y. Argonaute-mediated translational repression (and activation). Fly. 3: 204-6. PMID 19556851  1
2009 Kawaoka S, Hayashi N, Suzuki Y, Abe H, Sugano S, Tomari Y, Shimada T, Katsuma S. The Bombyx ovary-derived cell line endogenously expresses PIWI/PIWI-interacting RNA complexes. Rna (New York, N.Y.). 15: 1258-64. PMID 19460866 DOI: 10.1261/rna.1452209  0.48
2009 Iwasaki S, Kawamata T, Tomari Y. Drosophila argonaute1 and argonaute2 employ distinct mechanisms for translational repression. Molecular Cell. 34: 58-67. PMID 19268617 DOI: 10.1016/j.molcel.2009.02.010  1
2007 Tomari Y, Du T, Zamore PD. Sorting of Drosophila small silencing RNAs. Cell. 130: 299-308. PMID 17662944 DOI: 10.1016/j.cell.2007.05.057  1
2007 Förstemann K, Horwich MD, Wee L, Tomari Y, Zamore PD. Drosophila microRNAs are sorted into functionally distinct argonaute complexes after production by dicer-1. Cell. 130: 287-97. PMID 17662943 DOI: 10.1016/j.cell.2007.05.056  1
2007 Hartig JV, Tomari Y, Förstemann K. piRNAs--the ancient hunters of genome invaders. Genes & Development. 21: 1707-13. PMID 17639076 DOI: 10.1101/gad.1567007  1
2005 Matranga C, Tomari Y, Shin C, Bartel DP, Zamore PD. Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes. Cell. 123: 607-20. PMID 16271386 DOI: 10.1016/j.cell.2005.08.044  1
2005 Förstemann K, Tomari Y, Du T, Vagin VV, Denli AM, Bratu DP, Klattenhoff C, Theurkauf WE, Zamore PD. Normal microRNA maturation and germ-line stem cell maintenance requires Loquacious, a double-stranded RNA-binding domain protein. Plos Biology. 3: e236. PMID 15918770 DOI: 10.1371/journal.pbio.0030236  1
2005 Tomari Y, Zamore PD. Perspective: machines for RNAi. Genes & Development. 19: 517-29. PMID 15741316 DOI: 10.1101/gad.1284105  1
2005 Tomari Y, Zamore PD. MicroRNA biogenesis: drosha can't cut it without a partner. Current Biology : Cb. 15: R61-4. PMID 15668159 DOI: 10.1016/j.cub.2004.12.057  1
2004 Tomari Y, Matranga C, Haley B, Martinez N, Zamore PD. A protein sensor for siRNA asymmetry. Science (New York, N.Y.). 306: 1377-80. PMID 15550672 DOI: 10.1126/science.1102755  1
2004 Schwarz DS, Tomari Y, Zamore PD. The RNA-induced silencing complex is a Mg2+-dependent endonuclease. Current Biology : Cb. 14: 787-91. PMID 15120070 DOI: 10.1016/j.cub.2004.03.008  1
2004 Tomari Y, Du T, Haley B, Schwarz DS, Bennett R, Cook HA, Koppetsch BS, Theurkauf WE, Zamore PD. RISC assembly defects in the Drosophila RNAi mutant armitage. Cell. 116: 831-41. PMID 15035985 DOI: 10.1016/S0092-8674(04)00218-1  1
2003 Tomari Y, Hino N, Nagaike T, Suzuki T, Ueda T. Decreased CCA-addition in human mitochondrial tRNAs bearing a pathogenic A4317G or A10044G mutation. The Journal of Biological Chemistry. 278: 16828-33. PMID 12621050 DOI: 10.1074/jbc.M213216200  0.32
2002 Tomari Y, Suzuki T, Ueda T. tRNA recognition by CCA-adding enzyme. Nucleic Acids Research. Supplement (2001). 77-8. PMID 12903113  0.32
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