Kristen Panfilio - Related publications

Affiliations: 
University of Cologne, Köln, Nordrhein-Westfalen, Germany 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Li X, Cai K, Pei X, Li Y, Hu Y, Meng F, Song X, Tigabu M, Ding C, Zhao X. Genome-Wide Identification of NAC Transcription Factor Family in and Their Expression Analysis during the Fruit Development and Ripening. International Journal of Molecular Sciences. 22. PMID 34830294 DOI: 10.3390/ijms222212414   
2021 Iqbal Qureshi AM, Sofi MU, Dar NA, Khan MH, Mahdi SS, Dar ZA, Bangroo S, El-Serehy HA, Hefft DI, Popescu SM. Insilco identification and characterization of superoxide dismutase gene family in . Saudi Journal of Biological Sciences. 28: 5526-5537. PMID 34588862 DOI: 10.1016/j.sjbs.2021.08.009   
2021 Wan JN, Li Y, Guo T, Ji GY, Luo SZ, Ji KP, Cao Y, Tan Q, Bao DP, Yang RH. Whole-Genome and Transcriptome Sequencing of Reveals Its Associated Ectomycorrhizal Niche and Conserved Pathways Involved in Fruiting Body Development. Frontiers in Microbiology. 12: 732458. PMID 34659161 DOI: 10.3389/fmicb.2021.732458   
2021 Acs-Szabo L, Papp LA, Sipiczki M, Miklos I. Genome Comparisons of the Fission Yeasts Reveal Ancient Collinear Loci Maintained by Natural Selection. Journal of Fungi (Basel, Switzerland). 7. PMID 34682285 DOI: 10.3390/jof7100864   
2021 Feng C, Zou S, Gao P, Wang Z. identification, characterization expression profile of WUSCHEL-Related Homeobox (WOX) gene family in two species of kiwifruit. Peerj. 9: e12348. PMID 34760371 DOI: 10.7717/peerj.12348   
2021 Lu L, Hou Q, Wang L, Zhang T, Zhao W, Yan T, Zhao L, Li J, Wan X. Genome-Wide Identification and Characterization of Polygalacturonase Gene Family in Maize ( L.). International Journal of Molecular Sciences. 22. PMID 34639068 DOI: 10.3390/ijms221910722   
2021 Awan F, Ali MM, Hamid M, Awan MH, Mushtaq MH, Kalsoom S, Ijaz M, Mehmood K, Liu Y. Epi-Gene: An R-Package for Easy Pan-Genome Analysis. Biomed Research International. 2021: 5585586. PMID 34595238 DOI: 10.1155/2021/5585586   
2021 Han S, Jiao Z, Niu MX, Yu X, Huang M, Liu C, Wang HL, Zhou Y, Mao W, Wang X, Yin W, Xia X. Genome-Wide Comprehensive Analysis of the Gene Family in . International Journal of Molecular Sciences. 22. PMID 34830215 DOI: 10.3390/ijms222212336   
2021 Yu X, Zhong S, Yang H, Chen C, Chen W, Yang H, Guan J, Fu P, Tan F, Ren T, Shen J, Zhang M, Luo P. Identification and Characterization of Resistance Genes in . Frontiers in Plant Science. 12: 758559. PMID 34777439 DOI: 10.3389/fpls.2021.758559   
2021 Zhang L, Wang S, Su C, Harris AJ, Zhao L, Su N, Wang JR, Duan L, Chang ZY. Comparative Chloroplast Genomics and Phylogenetic Analysis of (Zygophyllaceae) of China. Frontiers in Plant Science. 12: 723622. PMID 34630471 DOI: 10.3389/fpls.2021.723622   
2021 Young Chae G, Hong WJ, Jeong Jang M, Jung KH, Kim S. Recurrent mutations promote widespread structural and functional divergence of MULE-derived genes in plants. Nucleic Acids Research. PMID 34725701 DOI: 10.1093/nar/gkab932   
2021 Yocca AE, Edger PP. Current status and future perspectives on the evolution of cis-regulatory elements in plants. Current Opinion in Plant Biology. 65: 102139. PMID 34837823 DOI: 10.1016/j.pbi.2021.102139   
2021 Singh A, Schermann G, Reislöhner S, Kellner N, Hurt E, Brunner M. Global Transcriptome Characterization and Assembly of the Thermophilic Ascomycete . Genes. 12. PMID 34680944 DOI: 10.3390/genes12101549   
2021 Zhou P, Wang L, Liu H, Li C, Li Z, Wang J, Tan X. CyanoOmicsDB: an integrated omics database for functional genomic analysis of cyanobacteria. Nucleic Acids Research. PMID 34614159 DOI: 10.1093/nar/gkab891   
2021 Jiang N, Hu S, Peng B, Li Z, Yuan X, Xiao S, Fu Y. Genome of Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for . Frontiers in Microbiology. 12: 724451. PMID 34603250 DOI: 10.3389/fmicb.2021.724451   
2021 Jiang T, Yin Z, Cai R, Yu H, Lu Q, Zhao S, Tian Y, Yan Y, Chen X, Guo J. Chromosomal-level Genome Assembly of a True Bug, Aspongopus chinensis Dallas, 1851 (Hemiptera: Dinidoridae). Genome Biology and Evolution. PMID 34623414 DOI: 10.1093/gbe/evab232   
2021 Jiang S, Du Q, Feng C, Ma L, Zhang Z. CompoDynamics: a comprehensive database for characterizing sequence composition dynamics. Nucleic Acids Research. PMID 34718745 DOI: 10.1093/nar/gkab979   
2021 Zhou J, Wu P, Xiong Z, Liu N, Zhao N, Ji M, Qiu Y, Yang B. Chromosome-Level Genome Assembly Reveals Significant Gene Expansion in the Toll and IMD Signaling Pathways of . Frontiers in Genetics. 12: 728418. PMID 34777464 DOI: 10.3389/fgene.2021.728418   
2021 Manzoor MA, Sabir IA, Shah IH, Wang H, Yu Z, Rasool F, Mazhar MZ, Younas S, Abdullah M, Cai Y. Comprehensive Comparative Analysis of the GATA Transcription Factors in Four Rosaceae Species and Phytohormonal Response in Chinese Pear () Fruit. International Journal of Molecular Sciences. 22. PMID 34830372 DOI: 10.3390/ijms222212492   
2021 Mei Y, Jing D, Tang S, Chen X, Chen H, Duanmu H, Cong Y, Chen M, Ye X, Zhou H, He K, Li F. InsectBase 2.0: a comprehensive gene resource for insects. Nucleic Acids Research. PMID 34792158 DOI: 10.1093/nar/gkab1090   
2021 Singh S, Chhapekar SS, Ma Y, Rameneni JJ, Oh SH, Kim J, Lim YP, Choi SR. Genome-Wide Identification, Evolution, and Comparative Analysis of B-Box Genes in , , and and Their Expression Profiling in in Response to Multiple Hormones and Abiotic Stresses. International Journal of Molecular Sciences. 22. PMID 34638707 DOI: 10.3390/ijms221910367   
2021 Bakkali M, Martín-Blázquez R, Ruiz-Estévez M, Garrido-Ramos MA. De Novo Sporophyte Transcriptome Assembly and Functional Annotation in the Endangered Fern Species (Willd.) G. Kunkel. Genes. 12. PMID 34208974 DOI: 10.3390/genes12071017   
2021 White ND, Batz ZA, Braun EL, Braun MJ, Carleton KL, Kimball RT, Swaroop A. A novel exome probe set captures phototransduction genes across birds (Aves) enabling efficient analysis of vision evolution. Molecular Ecology Resources. PMID 34652059 DOI: 10.1111/1755-0998.13496   
2021 Wu H, Hu Q, Ai F, Zhang J, Kang M, Lin H, Xu Z, Dong G, Ma T, Liu J. A chromosome-level genome assembly for the wild kiwifruit Actinidia kolomikta provides insights into canker resistance and fruit development. Plant Biotechnology Journal. PMID 34786806 DOI: 10.1111/pbi.13748   
2021 Kim P, Tan H, Liu J, Yang M, Zhou X. FusionAI: Predicting fusion breakpoint from DNA sequence with deep learning. Iscience. 24: 103164. PMID 34646994 DOI: 10.1016/j.isci.2021.103164   
2021 Oh J, Lee SG, Park C. PIC-Me: paralogs and isoforms classifier based on machine-learning approaches. Bmc Bioinformatics. 22: 311. PMID 34674638 DOI: 10.1186/s12859-021-04229-x   
2021 Watson AK, Lopez P, Bapteste E. Hundreds of out-of-frame remodelled gene families in the E. coli pangenome. Molecular Biology and Evolution. PMID 34792602 DOI: 10.1093/molbev/msab329   
2021 Sun J, Wang Y, Garran TA, Qiao P, Wang M, Yuan Q, Guo L, Huang L. Heterogeneous Genetic Diversity Estimation of a Promising Domestication Medicinal Motherwort Based on Chloroplast Genome Resources. Frontiers in Genetics. 12: 721022. PMID 34603384 DOI: 10.3389/fgene.2021.721022   
2021 Birchler JA, Veitia RA. One Hundred Years of Gene Balance: How Stoichiometric Issues Affect Gene Expression, Genome Evolution, and Quantitative Traits. Cytogenetic and Genome Research. 1-22. PMID 34814143 DOI: 10.1159/000519592   
2021 Li X, Li Y, Sylvester SP, Zang M, El-Kassaby YA, Fang Y. Evolutionary patterns of nucleotide substitution rates in plastid genomes of . Ecology and Evolution. 11: 13401-13414. PMID 34646478 DOI: 10.1002/ece3.8063   
2021 Pema Y, Ma C, Bautista MAC, Chen T. The complete chloroplast genome sequence of the Tibetan herb (Benth. ex Hook.f.) Mathiesen (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 3261-3262. PMID 34693018 DOI: 10.1080/23802359.2021.1993459   
2021 Wang Y, Fang G, Chen X, Cao Y, Wu N, Cui Q, Zhu C, Qian L, Huang Y, Zhan S. The genome of the black cutworm Agrotis ipsilon. Insect Biochemistry and Molecular Biology. 103665. PMID 34624466 DOI: 10.1016/j.ibmb.2021.103665   
2021 Wright BW, Molloy MP, Jaschke PR. Overlapping genes in natural and engineered genomes. Nature Reviews. Genetics. PMID 34611352 DOI: 10.1038/s41576-021-00417-w   
2021 Cui M, Lin L, Guo H, Zhang D, Zhang J, Cheng W, Song X, Xing Z, Long Y. /computational analysis of mevalonate pyrophosphate decarboxylase gene families in . Open Life Sciences. 16: 1022-1036. PMID 34616915 DOI: 10.1515/biol-2021-0103   
2021 Sun TW, Ku C. Unraveling gene content variation across eukaryotic giant viruses based on network analyses and host associations. Virus Evolution. 7: veab081. PMID 34754514 DOI: 10.1093/ve/veab081   
2021 Yu Z, Zhang W, Fu H, Zou X, Zhao M, Liang S, Gu C, Yang Q, He M, Xiao Q, Xiao W, He L, Lü M. Genomic analysis of Poxviridae and exploring qualified gene sequences for phylogenetics. Computational and Structural Biotechnology Journal. 19: 5479-5486. PMID 34712393 DOI: 10.1016/j.csbj.2021.09.031   
2021 Caicedo-Montoya C, Manzo-Ruiz M, Ríos-Estepa R. Pan-Genome of the Genus and Prioritization of Biosynthetic Gene Clusters With Potential to Produce Antibiotic Compounds. Frontiers in Microbiology. 12: 677558. PMID 34659136 DOI: 10.3389/fmicb.2021.677558   
2021 Tian R, Yang C, Geng Y, Seim I, Yang G. Genomewide analysis of sperm whale E2 ubiquitin conjugating enzyme genes. Journal of Genetics. 100. PMID 34787113   
2021 Zeng WQ, Yan HJ, Wu YZ, Wang RR, Xiao XF, Qi ZC, Yan XL. The complete chloroplast genome sequence of Japanese buttercup Thunb. Mitochondrial Dna. Part B, Resources. 6: 3186-3187. PMID 34660897 DOI: 10.1080/23802359.2021.1987166   
2021 Zhuang X, Cheng CC. Propagation of a De Novo Gene under Natural Selection: Antifreeze Glycoprotein Genes and Their Evolutionary History in Codfishes. Genes. 12. PMID 34828383 DOI: 10.3390/genes12111777   
2021 Hakimi H, Asada M, Kawazu SI. Recent Advances in Molecular Genetic Tools for . Veterinary Sciences. 8. PMID 34679052 DOI: 10.3390/vetsci8100222   
2021 Wen G, Chen S, Fan L, Zeng L, Xu B. The complete chloroplast genome of H.S.Lo (Menispermaceae), an important traditional medicine from South China. Mitochondrial Dna. Part B, Resources. 6: 3269-3270. PMID 34712807 DOI: 10.1080/23802359.2021.1993099   
2021 Arshinoff BI, Cary GA, Karimi K, Foley S, Agalakov S, Delgado F, Lotay VS, Ku CJ, Pells TJ, Beatman TR, Kim E, Cameron RA, Vize PD, Telmer CA, Croce JC, et al. Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. Nucleic Acids Research. PMID 34791383 DOI: 10.1093/nar/gkab1005   
2021 Cantó-Pastor A, Mason GA, Brady SM, Provart NJ. Arabidopsis bioinformatics: tools and strategies. The Plant Journal : For Cell and Molecular Biology. PMID 34695270 DOI: 10.1111/tpj.15547   
2021 Baptista RP, Li Y, Sateriale A, Brooks KL, Tracey A, Sanders MJ, Ansell BRE, Jex AR, Cooper GW, Smith ED, Xiao R, Dumaine JE, Georgeson P, Pope B, Berriman M, et al. Long-read assembly and comparative evidence-based reanalysis of genome sequences reveals expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions. Genome Research. PMID 34764149 DOI: 10.1101/gr.275325.121   
2021 Zhang Y, Liu Y, Ge Q, Han K, Shi C, Liu X. The complete chloroplast genome of a shrub species, (Smilacaceae) from Guangdong, China. Mitochondrial Dna. Part B, Resources. 6: 3064-3066. PMID 34595338 DOI: 10.1080/23802359.2021.1979431   
2021 Chakraborty A, Mahajan S, Jaiswal SK, Sharma VK. Genome sequencing of turmeric provides evolutionary insights into its medicinal properties. Communications Biology. 4: 1193. PMID 34654884 DOI: 10.1038/s42003-021-02720-y   
2021 Thaxton C, Good ME, DiStefano MT, Luo X, Andersen EF, Thorland E, Berg J, Martin CL, Rehm HL, Riggs ER, . Utilizing ClinGen Gene-Disease Validity and Dosage Sensitivity Curations to Inform Variant Classification. Human Mutation. PMID 34694049 DOI: 10.1002/humu.24291   
2021 Zhang S, Wang R, Huang C, Zhang L, Sun L. Modulation of Global Gene Expression by Aneuploidy and CNV of Dosage Sensitive Regulatory Genes. Genes. 12. PMID 34681000 DOI: 10.3390/genes12101606   
2021 Liu Y, Xu Y, Jia X. The complete chloroplast genome of , an edible oil Camellia. Mitochondrial Dna. Part B, Resources. 6: 3169-3170. PMID 34660893 DOI: 10.1080/23802359.2021.1987169