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Molly Schumer - Publications

Affiliations: 
2011-2016 Stanford University, Palo Alto, CA 
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36/44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Langdon QK, Groh JS, Aguillon SM, Powell DL, Gunn T, Payne C, Baczenas JJ, Donny A, Dodge TO, Du K, Schartl M, Ríos-Cárdenas O, Gutierrez-Rodríguez C, Morris M, Schumer M. Genome evolution is surprisingly predictable after initial hybridization. Biorxiv : the Preprint Server For Biology. PMID 38187753 DOI: 10.1101/2023.12.21.572897  0.469
2023 Thompson KA, Brandvain Y, Coughlan JM, Delmore KE, Justen H, Linnen CR, Ortiz-Barrientos D, Rushworth CA, Schneemann H, Schumer M, Stelkens R. The Ecology of Hybrid Incompatibilities. Cold Spring Harbor Perspectives in Biology. PMID 38151331 DOI: 10.1101/cshperspect.a041440  0.399
2023 Hoge C, de Manuel M, Mahgoub M, Okami N, Fuller Z, Banerjee S, Baker Z, McNulty M, Andolfatto P, Macfarlan TS, Schumer M, Tzika AC, Przeworski M. Patterns of recombination in snakes reveal a tug of war between PRDM9 and promoter-like features. Biorxiv : the Preprint Server For Biology. PMID 37502971 DOI: 10.1101/2023.07.11.548536  0.646
2023 Dodge TO, Farquharson KA, Ford C, Cavanagh L, Schubert K, Schumer M, Belov K, Hogg CJ. Genomes of two Extinct-in-the-Wild reptiles from Christmas Island reveal distinct evolutionary histories and conservation insights. Molecular Ecology Resources. PMID 36872490 DOI: 10.1111/1755-0998.13780  0.419
2023 Banerjee SM, Powell DL, Moran BM, Ramírez-Duarte WF, Langdon QK, Gunn TR, Vazquez G, Rochman C, Schumer M. Complex hybridization between deeply diverged fish species in a disturbed ecosystem. Evolution; International Journal of Organic Evolution. PMID 36753531 DOI: 10.1093/evolut/qpad019  0.459
2022 Aguillon SM, Dodge TO, Preising GA, Schumer M. Introgression. Current Biology : Cb. 32: R865-R868. PMID 35998591 DOI: 10.1016/j.cub.2022.07.004  0.395
2022 Payne C, Bovio S, Powell D, Gunn T, Banerjee S, Grant V, Rosenthal GG, Schumer M. Genomic insights into variation in thermotolerance between hybridizing swordtail fishes. Molecular Ecology. PMID 35510780 DOI: 10.1111/mec.16489  0.433
2022 Li J, Schumer M, Bank C. Imbalanced segregation of recombinant haplotypes in hybrid populations reveals inter- and intrachromosomal Dobzhansky-Muller incompatibilities. Plos Genetics. 18: e1010120. PMID 35344560 DOI: 10.1371/journal.pgen.1010120  0.376
2022 Langdon QK, Powell DL, Kim B, Banerjee SM, Payne C, Dodge TO, Moran B, Fascinetto-Zago P, Schumer M. Predictability and parallelism in the contemporary evolution of hybrid genomes. Plos Genetics. 18: e1009914. PMID 35085234 DOI: 10.1371/journal.pgen.1009914  0.417
2022 Thompson KA, Peichel CL, Rennison DJ, McGee MD, Albert AYK, Vines TH, Greenwood AK, Wark AR, Brandvain Y, Schumer M, Schluter D. Analysis of ancestry heterozygosity suggests that hybrid incompatibilities in threespine stickleback are environment dependent. Plos Biology. 20: e3001469. PMID 35007278 DOI: 10.1371/journal.pbio.3001469  0.684
2021 Powell DL, Moran B, Kim B, Banerjee SM, Aguillon SM, Fascinetto-Zago P, Langdon Q, Schumer M. Two new hybrid populations expand the swordtail hybridization model system. Evolution; International Journal of Organic Evolution. PMID 34460102 DOI: 10.1111/evo.14337  0.438
2021 Moran BM, Payne C, Langdon Q, Powell DL, Brandvain Y, Schumer M. The genomic consequences of hybridization. Elife. 10. PMID 34346866 DOI: 10.7554/eLife.69016  0.397
2021 Powell DL, Payne C, Banerjee SM, Keegan M, Bashkirova E, Cui R, Andolfatto P, Rosenthal GG, Schumer M. The Genetic Architecture of Variation in the Sexually Selected Sword Ornament and Its Evolution in Hybrid Populations. Current Biology : Cb. PMID 33513352 DOI: 10.1016/j.cub.2020.12.049  0.674
2020 Powell DL, García-Olazábal M, Keegan M, Reilly P, Du K, Díaz-Loyo AP, Banerjee S, Blakkan D, Reich D, Andolfatto P, Rosenthal GG, Schartl M, Schumer M. Natural hybridization reveals incompatible alleles that cause melanoma in swordtail fish. Science (New York, N.Y.). 368: 731-736. PMID 32409469 DOI: 10.1126/Science.Aba5216  0.668
2020 Schumer M, Powell DL, Corbett-Detig R. Versatile simulations of admixture and accurate local ancestry inference with mixnmatch and ancestryinfer. Molecular Ecology Resources. PMID 32324964 DOI: 10.1111/1755-0998.13175  0.346
2018 Schumer M, Xu C, Powell DL, Durvasula A, Skov L, Holland C, Blazier JC, Sankararaman S, Andolfatto P, Rosenthal GG, Przeworski M. Natural selection interacts with recombination to shape the evolution of hybrid genomes. Science (New York, N.Y.). PMID 29674434 DOI: 10.1126/Science.Aar3684  0.734
2018 Rosenthal GG, Schumer M, Andolfatto P. How the manakin got its crown: A novel trait that is unlikely to cause speciation. Proceedings of the National Academy of Sciences of the United States of America. PMID 29669913 DOI: 10.1073/Pnas.1804061115  0.68
2018 Schumer M, Rosenthal GG, Andolfatto P. What do we mean when we talk about hybrid speciation? Heredity. PMID 29302049 DOI: 10.1038/S41437-017-0036-Z  0.646
2017 Schumer M, Powell DL, Delclós PJ, Squire M, Cui R, Andolfatto P, Rosenthal GG. Assortative mating and persistent reproductive isolation in hybrids. Proceedings of the National Academy of Sciences of the United States of America. PMID 28973863 DOI: 10.1073/Pnas.1711238114  0.702
2017 Baker Z, Schumer M, Haba Y, Bashkirova L, Holland C, Rosenthal GG, Przeworski M. Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates. Elife. 6. PMID 28590247 DOI: 10.7554/Elife.24133  0.461
2017 Cui R, Delclos PJ, Schumer M, Rosenthal GG. Early social learning triggers neurogenomic expression changes in a swordtail fish. Proceedings. Biological Sciences. 284. PMID 28515207 DOI: 10.1098/Rspb.2017.0701  0.349
2016 Schumer M, Brandvain Y. Determining epistatic selection in admixed populations. Molecular Ecology. PMID 27061282 DOI: 10.1111/Mec.13641  0.357
2016 Schumer M, Cui R, Powell DL, Rosenthal GG, Andolfatto P. Ancient hybridization and genomic stabilization in a swordtail fish. Molecular Ecology. PMID 26937625 DOI: 10.1111/Mec.13602  0.681
2015 Cui R, Schumer M, Rosenthal GG. Admix'em: A flexible framework for forward-time simulations of hybrid populations with selection and mate choice. Bioinformatics (Oxford, England). PMID 26615212 DOI: 10.1093/Bioinformatics/Btv700  0.332
2015 Ghosh R, Bloom JS, Mohammadi A, Schumer ME, Andolfatto P, Ryu W, Kruglyak L. Genetics of Intra-Species Variation in Avoidance Behavior Induced by a Thermal Stimulus in Caenorhabditis elegans. Genetics. PMID 26092720 DOI: 10.1534/Genetics.115.178491  0.591
2015 Schumer M, Cui R, Rosenthal GG, Andolfatto P. simMSG: an experimental design tool for high-throughput genotyping of hybrids. Molecular Ecology Resources. PMID 26032857 DOI: 10.1111/1755-0998.12434  0.677
2015 Schumer M, Cui R, Rosenthal GG, Andolfatto P. Reproductive isolation of hybrid populations driven by genetic incompatibilities. Plos Genetics. 11: e1005041. PMID 25768654 DOI: 10.1371/Journal.Pgen.1005041  0.717
2015 Culumber ZW, Schumer M, Monks S, Tobler M. Environmental heterogeneity generates opposite gene-by-environment interactions for two fitness-related traits within a population. Evolution; International Journal of Organic Evolution. 69: 541-50. PMID 25496554 DOI: 10.1111/Evo.12574  0.346
2014 Schumer M, Cui R, Powell DL, Dresner R, Rosenthal GG, Andolfatto P. High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species. Elife. 3. PMID 24898754 DOI: 10.7554/Elife.02535  0.732
2014 Schumer M, Rosenthal GG, Andolfatto P. How common is homoploid hybrid speciation? Evolution; International Journal of Organic Evolution. 68: 1553-60. PMID 24620775 DOI: 10.1111/Evo.12399  0.678
2014 Schumer M, Cui R, Powell DL, Dresner R, Rosenthal GG, Andolfatto P. Author response: High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species Elife. DOI: 10.7554/Elife.02535.024  0.671
2013 Cui R, Schumer M, Kruesi K, Walter R, Andolfatto P, Rosenthal GG. Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes. Evolution; International Journal of Organic Evolution. 67: 2166-79. PMID 23888843 DOI: 10.1111/Evo.12099  0.708
2013 Schumer M, Cui R, Boussau B, Walter R, Rosenthal G, Andolfatto P. An evaluation of the hybrid speciation hypothesis for Xiphophorus clemenciae based on whole genome sequences. Evolution; International Journal of Organic Evolution. 67: 1155-68. PMID 23550763 DOI: 10.1111/Evo.12009  0.733
2013 Schumer M, Birger R, Tantipathananandh C, Aurisano J, Maggioni M, Mwangi P. Infestation by a common parasite is correlated with ant symbiont identity in a plant-ant mutualism Biotropica. 45: 276-279. DOI: 10.1111/Btp.12038  0.38
2012 Zhen Y, Aardema ML, Medina EM, Schumer M, Andolfatto P. Parallel molecular evolution in an herbivore community. Science (New York, N.Y.). 337: 1634-7. PMID 23019645 DOI: 10.1126/Science.1226630  0.654
2011 Schumer M, Krishnakant K, Renn SC. Comparative gene expression profiles for highly similar aggressive phenotypes in male and female cichlid fishes (Julidochromis). The Journal of Experimental Biology. 214: 3269-78. PMID 21900474 DOI: 10.1242/Jeb.055467  0.347
Low-probability matches (unlikely to be authored by this person)
2017 Baker Z, Schumer M, Haba Y, Bashkirova L, Holland C, Rosenthal GG, Przeworski M. Author response: Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates Elife. DOI: 10.7554/Elife.24133.040  0.293
2022 Cavassim MIA, Baker Z, Hoge C, Schierup MH, Schumer M, Przeworski M. losses in vertebrates are coupled to those of paralogs and . Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35217607 DOI: 10.1073/pnas.2114401119  0.276
2013 Renn SCP, Schumer ME. Genetic accommodation and behavioural evolution: Insights from genomic studies Animal Behaviour. 85: 1012-1022. DOI: 10.1016/J.Anbehav.2013.02.012  0.261
2009 Spengler ML, Kuropatwinski KK, Schumer M, Antoch MP. A serine cluster mediates BMAL1-dependent CLOCK phosphorylation and degradation. Cell Cycle (Georgetown, Tex.). 8: 4138-46. PMID 19946213 DOI: 10.4161/Cc.8.24.10273  0.22
2023 Young RL, Price SM, Schumer M, Wang S, Cummings ME. Individual variation in preference behavior in sailfin fish refines the neurotranscriptomic pathway for mate preference. Ecology and Evolution. 13: e10323. PMID 37492456 DOI: 10.1002/ece3.10323  0.201
2019 Mateos M, Kang D, Klopp C, Parrinello H, García-Olazábal M, Schumer M, Jue NK, Guiguen Y, Schartl M. Draft Genome Assembly and Annotation of the Gila Topminnow Poeciliopsis occidentalis Frontiers in Ecology and Evolution. 7. DOI: 10.3389/Fevo.2019.00404  0.15
2024 Moran BM, Payne CY, Powell DL, Iverson ENK, Donny AE, Banerjee SM, Langdon QK, Gunn TR, Rodriguez-Soto RA, Madero A, Baczenas JJ, Kleczko KM, Liu F, Matney R, Singhal K, ... Schumer M, et al. A lethal mitonuclear incompatibility in complex I of natural hybrids. Nature. PMID 38200310 DOI: 10.1038/s41586-023-06895-8  0.12
2013 Obedian E, Olsson C, Schumer M, Lieberman E, Kapoor D, Zimberg S. The Risk of Urosepsis in Patients Undergoing Fiducial Marker Placement for Image Guided Radiation Therapy (IGRT) of Prostate Cancer International Journal of Radiation Oncology*Biology*Physics. 87: S383. DOI: 10.1016/J.IJROBP.2013.06.1004  0.026
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