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Barbara Stranger - Publications

Affiliations: 
University of Chicago, Chicago, IL 
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51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Wang J, Gamazon ER, Pierce BL, Stranger BE, Im HK, Gibbons RD, Cox NJ, Nicolae DL, Chen LS. Imputing Gene Expression in Uncollected Tissues Within and Beyond GTEx. American Journal of Human Genetics. PMID 27040689 DOI: 10.1016/j.ajhg.2016.02.020  0.64
2015 Peters MJ, Joehanes R, Pilling LC, Schurmann C, Conneely KN, Powell J, Reinmaa E, Sutphin GL, Zhernakova A, Schramm K, Wilson YA, Kobes S, Tukiainen T, Ramos YF, ... ... Stranger BE, et al. The transcriptional landscape of age in human peripheral blood. Nature Communications. 6: 8570. PMID 26490707 DOI: 10.1038/Ncomms9570  0.64
2015 Croteau-Chonka DC, Rogers AJ, Raj T, McGeachie MJ, Qiu W, Ziniti JP, Stubbs BJ, Liang L, Martinez FD, Strunk RC, Lemanske RF, Liu AH, Stranger BE, Carey VJ, Raby BA. Expression Quantitative Trait Loci Information Improves Predictive Modeling of Disease Relevance of Non-Coding Genetic Variation. Plos One. 10: e0140758. PMID 26474488 DOI: 10.1371/Journal.Pone.0140758  0.64
2015 Trynka G, Westra HJ, Slowikowski K, Hu X, Xu H, Stranger BE, Klein RJ, Han B, Raychaudhuri S. Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci. American Journal of Human Genetics. 97: 139-52. PMID 26140449 DOI: 10.1016/J.Ajhg.2015.05.016  0.64
2015 Sul JH, Raj T, de Jong S, de Bakker PI, Raychaudhuri S, Ophoff RA, Stranger BE, Eskin E, Han B. Accurate and fast multiple-testing correction in eQTL studies. American Journal of Human Genetics. 96: 857-68. PMID 26027500 DOI: 10.1016/J.Ajhg.2015.04.012  0.64
2015 Tilburgs T, Crespo ÂC, van der Zwan A, Rybalov B, Raj T, Stranger B, Gardner L, Moffett A, Strominger JL. Human HLA-G+ extravillous trophoblasts: Immune-activating cells that interact with decidual leukocytes. Proceedings of the National Academy of Sciences of the United States of America. 112: 7219-24. PMID 26015573 DOI: 10.1073/Pnas.1507977112  0.64
2015 Gamazon ER, Stranger BE. The impact of human copy number variation on gene expression. Briefings in Functional Genomics. 14: 352-7. PMID 25922366 DOI: 10.1093/bfgp/elv017  0.64
2015 De Jager PL, Hacohen N, Mathis D, Regev A, Stranger BE, Benoist C. ImmVar project: Insights and design considerations for future studies of "healthy" immune variation. Seminars in Immunology. 27: 51-7. PMID 25819567 DOI: 10.1016/J.Smim.2015.03.003  0.64
2014 Ye CJ, Feng T, Kwon HK, Raj T, Wilson MT, Asinovski N, McCabe C, Lee MH, Frohlich I, Paik HI, Zaitlen N, Hacohen N, Stranger B, De Jager P, Mathis D, et al. Intersection of population variation and autoimmunity genetics in human T cell activation. Science (New York, N.Y.). 345: 1254665. PMID 25214635 DOI: 10.1126/Science.1254665  0.64
2014 Hu X, Kim H, Raj T, Brennan PJ, Trynka G, Teslovich N, Slowikowski K, Chen WM, Onengut S, Baecher-Allan C, De Jager PL, Rich SS, Stranger BE, Brenner MB, Raychaudhuri S. Regulation of gene expression in autoimmune disease loci and the genetic basis of proliferation in CD4+ effector memory T cells. Plos Genetics. 10: e1004404. PMID 24968232 DOI: 10.1371/Journal.Pgen.1004404  0.64
2014 Li Q, Stram A, Chen C, Kar S, Gayther S, Pharoah P, Haiman C, Stranger B, Kraft P, Freedman ML. Expression QTL-based analyses reveal candidate causal genes and loci across five tumor types. Human Molecular Genetics. 23: 5294-302. PMID 24907074 DOI: 10.1093/Hmg/Ddu228  0.64
2014 Raj T, Rothamel K, Mostafavi S, Ye C, Lee MN, Replogle JM, Feng T, Lee M, Asinovski N, Frohlich I, Imboywa S, Von Korff A, Okada Y, Patsopoulos NA, Davis S, ... ... Stranger BE, et al. Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes. Science (New York, N.Y.). 344: 519-23. PMID 24786080 DOI: 10.1126/Science.1249547  0.64
2014 Ferraro A, D'Alise AM, Raj T, Asinovski N, Phillips R, Ergun A, Replogle JM, Bernier A, Laffel L, Stranger BE, De Jager PL, Mathis D, Benoist C. Interindividual variation in human T regulatory cells. Proceedings of the National Academy of Sciences of the United States of America. 111: E1111-20. PMID 24610777 DOI: 10.1073/Pnas.1401343111  0.64
2014 Lee MN, Ye C, Villani AC, Raj T, Li W, Eisenhaure TM, Imboywa SH, Chipendo PI, Ran FA, Slowikowski K, Ward LD, Raddassi K, McCabe C, Lee MH, Frohlich IY, ... ... Stranger BE, et al. Common genetic variants modulate pathogen-sensing responses in human dendritic cells. Science (New York, N.Y.). 343: 1246980. PMID 24604203 DOI: 10.1126/Science.1246980  0.64
2014 Raj T, Ryan KJ, Replogle JM, Chibnik LB, Rosenkrantz L, Tang A, Rothamel K, Stranger BE, Bennett DA, Evans DA, De Jager PL, Bradshaw EM. CD33: increased inclusion of exon 2 implicates the Ig V-set domain in Alzheimer's disease susceptibility. Human Molecular Genetics. 23: 2729-36. PMID 24381305 DOI: 10.1093/Hmg/Ddt666  0.64
2014 Gamazon ER, Stranger BE. Genomics of alternative splicing: evolution, development and pathophysiology. Human Genetics. 133: 679-87. PMID 24378600 DOI: 10.1007/s00439-013-1411-3  0.64
2013 Patsopoulos NA, Barcellos LF, Hintzen RQ, Schaefer C, van Duijn CM, Noble JA, Raj T, Gourraud PA, Stranger BE, Oksenberg J, Olsson T, Taylor BV, Sawcer S, et al. Fine-mapping the genetic association of the major histocompatibility complex in multiple sclerosis: HLA and non-HLA effects. Plos Genetics. 9: e1003926. PMID 24278027 DOI: 10.1371/Journal.Pgen.1003926  0.64
2013 Stranger BE, Raj T. Genetics of human gene expression. Current Opinion in Genetics & Development. 23: 627-34. PMID 24238872 DOI: 10.1016/j.gde.2013.10.004  0.64
2013 Gokcumen O, Zhu Q, Mulder LC, Iskow RC, Austermann C, Scharer CD, Raj T, Boss JM, Sunyaev S, Price A, Stranger B, Simon V, Lee C. Balancing selection on a regulatory region exhibiting ancient variation that predates human-neandertal divergence. Plos Genetics. 9: e1003404. PMID 23593015 DOI: 10.1371/Journal.Pgen.1003404  0.64
2013 Cui J, Stahl EA, Saevarsdottir S, Miceli C, Diogo D, Trynka G, Raj T, Mirkov MU, Canhao H, Ikari K, Terao C, Okada Y, Wedrén S, Askling J, Yamanaka H, ... ... Stranger BE, et al. Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis. Plos Genetics. 9: e1003394. PMID 23555300 DOI: 10.1371/Journal.Pgen.1003394  0.64
2013 Raj T, Kuchroo M, Replogle JM, Raychaudhuri S, Stranger BE, De Jager PL. Common risk alleles for inflammatory diseases are targets of recent positive selection. American Journal of Human Genetics. 92: 517-29. PMID 23522783 DOI: 10.1016/J.Ajhg.2013.03.001  0.64
2013 Li Q, Seo JH, Stranger B, McKenna A, Pe'er I, Laframboise T, Brown M, Tyekucheva S, Freedman ML. Integrative eQTL-based analyses reveal the biology of breast cancer risk loci. Cell. 152: 633-41. PMID 23374354 DOI: 10.1016/J.Cell.2012.12.034  0.64
2013 Trynka G, Sandor C, Han B, Xu H, Stranger BE, Liu XS, Raychaudhuri S. Chromatin marks identify critical cell types for fine mapping complex trait variants Nature Genetics. 45: 124-130. PMID 23263488 DOI: 10.1038/Ng.2504  0.64
2012 Stranger BE, De Jager PL. Coordinating GWAS results with gene expression in a systems immunologic paradigm in autoimmunity. Current Opinion in Immunology. 24: 544-51. PMID 23040211 DOI: 10.1016/j.coi.2012.09.002  0.64
2012 Dimas AS, Nica AC, Montgomery SB, Stranger BE, Raj T, Buil A, Giger T, Lappalainen T, Gutierrez-Arcelus M, McCarthy MI, Dermitzakis ET. Sex-biased genetic effects on gene regulation in humans. Genome Research. 22: 2368-75. PMID 22960374 DOI: 10.1101/gr.134981.111  0.64
2012 Zaitlen N, Pasaniuc B, Patterson N, Pollack S, Voight B, Groop L, Altshuler D, Henderson BE, Kolonel LN, Le Marchand L, Waters K, Haiman CA, Stranger BE, Dermitzakis ET, Kraft P, et al. Analysis of case-control association studies with known risk variants. Bioinformatics (Oxford, England). 28: 1729-37. PMID 22556366 DOI: 10.1093/Bioinformatics/Bts259  0.64
2012 Stranger BE, Montgomery SB, Dimas AS, Parts L, Stegle O, Ingle CE, Sekowska M, Smith GD, Evans D, Gutierrez-Arcelus M, Price A, Raj T, Nisbett J, Nica AC, Beazley C, et al. Patterns of cis regulatory variation in diverse human populations. Plos Genetics. 8: e1002639. PMID 22532805 DOI: 10.1371/Journal.Pgen.1002639  0.64
2012 Stranger BE, Björkegren J, Dolan ME, Ritchie MD. Systems and genome-wide approaches unite to provide a route to personalized medicine. Genome Medicine. 4: 29. PMID 22494390 DOI: 10.1186/Gm328  0.64
2012 Raj T, Shulman JM, Keenan BT, Chibnik LB, Evans DA, Bennett DA, Stranger BE, De Jager PL. Alzheimer disease susceptibility loci: evidence for a protein network under natural selection. American Journal of Human Genetics. 90: 720-6. PMID 22482808 DOI: 10.1016/J.Ajhg.2012.02.022  0.64
2012 Brown KH, Dobrinski KP, Lee AS, Gokcumen O, Mills RE, Shi X, Chong WW, Chen JY, Yoo P, David S, Peterson SM, Raj T, Choy KW, Stranger BE, Williamson RE, et al. Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis. Proceedings of the National Academy of Sciences of the United States of America. 109: 529-34. PMID 22203992 DOI: 10.1073/Pnas.1112163109  0.64
2011 Stranger BE, Stahl EA, Raj T. Progress and promise of genome-wide association studies for human complex trait genetics. Genetics. 187: 367-83. PMID 21115973 DOI: 10.1534/Genetics.110.120907  0.64
2010 Yang TP, Beazley C, Montgomery SB, Dimas AS, Gutierrez-Arcelus M, Stranger BE, Deloukas P, Dermitzakis ET. Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies. Bioinformatics (Oxford, England). 26: 2474-6. PMID 20702402 DOI: 10.1093/bioinformatics/btq452  0.64
2010 . IL12A, MPHOSPH9/CDK2AP1 and RGS1 are novel multiple sclerosis susceptibility loci. Genes and Immunity. 11: 397-405. PMID 20555355 DOI: 10.1038/Gene.2010.28  0.64
2010 Nica AC, Montgomery SB, Dimas AS, Stranger BE, Beazley C, Barroso I, Dermitzakis ET. Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations. Plos Genetics. 6: e1000895. PMID 20369022 DOI: 10.1371/journal.pgen.1000895  0.64
2010 Prescott NJ, Dominy KM, Kubo M, Lewis CM, Fisher SA, Redon R, Huang N, Stranger BE, Blaszczyk K, Hudspith B, Parkes G, Hosono N, Yamazaki K, Onnie CM, Forbes A, et al. Independent and population-specific association of risk variants at the IRGM locus with Crohn's disease. Human Molecular Genetics. 19: 1828-39. PMID 20106866 DOI: 10.1093/hmg/ddq041  0.64
2009 Dimas AS, Deutsch S, Stranger BE, Montgomery SB, Borel C, Attar-Cohen H, Ingle C, Beazley C, Gutierrez Arcelus M, Sekowska M, Gagnebin M, Nisbett J, Deloukas P, Dermitzakis ET, Antonarakis SE. Common regulatory variation impacts gene expression in a cell type-dependent manner. Science (New York, N.Y.). 325: 1246-50. PMID 19644074 DOI: 10.1126/science.1174148  0.64
2009 Kudaravalli S, Veyrieras JB, Stranger BE, Dermitzakis ET, Pritchard JK. Gene expression levels are a target of recent natural selection in the human genome. Molecular Biology and Evolution. 26: 649-58. PMID 19091723 DOI: 10.1093/Molbev/Msn289  0.64
2008 Dimas AS, Stranger BE, Beazley C, Finn RD, Ingle CE, Forrest MS, Ritchie ME, Deloukas P, Tavaré S, Dermitzakis ET. Modifier effects between regulatory and protein-coding variation. Plos Genetics. 4: e1000244. PMID 18974877 DOI: 10.1371/Journal.Pgen.1000244  0.64
2008 Johnston CM, Lovell FL, Leongamornlert DA, Stranger BE, Dermitzakis ET, Ross MT. Large-scale population study of human cell lines indicates that dosage compensation is virtually complete. Plos Genetics. 4: e9. PMID 18208332 DOI: 10.1371/journal.pgen.0040009  0.64
2007 Marioni JC, Thorne NP, Valsesia A, Fitzgerald T, Redon R, Fiegler H, Andrews TD, Stranger BE, Lynch AG, Dermitzakis ET, Carter NP, Tavaré S, Hurles ME. Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization. Genome Biology. 8: R228. PMID 17961237 DOI: 10.1186/Gb-2007-8-10-R228  0.64
2007 Stranger BE, Nica AC, Forrest MS, Dimas A, Bird CP, Beazley C, Ingle CE, Dunning M, Flicek P, Koller D, Montgomery S, Tavaré S, Deloukas P, Dermitzakis ET. Population genomics of human gene expression. Nature Genetics. 39: 1217-24. PMID 17873874 DOI: 10.1038/Ng2142  0.64
2007 Bird CP, Stranger BE, Liu M, Thomas DJ, Ingle CE, Beazley C, Miller W, Hurles ME, Dermitzakis ET. Fast-evolving noncoding sequences in the human genome. Genome Biology. 8: R118. PMID 17578567 DOI: 10.1186/Gb-2007-8-6-R118  0.64
2007 Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, Thorne N, Redon R, Bird CP, de Grassi A, Lee C, Tyler-Smith C, Carter N, Scherer SW, Tavaré S, Deloukas P, et al. Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science (New York, N.Y.). 315: 848-53. PMID 17289997 DOI: 10.1126/Science.1136678  0.64
2006 Bird CP, Stranger BE, Dermitzakis ET. Functional variation and evolution of non-coding DNA. Current Opinion in Genetics & Development. 16: 559-64. PMID 17055246 DOI: 10.1016/j.gde.2006.10.003  0.64
2006 Stranger BE, Dermitzakis ET. From DNA to RNA to disease and back: the 'central dogma' of regulatory disease variation. Human Genomics. 2: 383-90. PMID 16848976  0.64
2006 Dermitzakis ET, Stranger BE. Genetic variation in human gene expression. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 17: 503-8. PMID 16783632 DOI: 10.1007/s00335-006-0005-y  0.64
2005 Stranger BE, Forrest MS, Clark AG, Minichiello MJ, Deutsch S, Lyle R, Hunt S, Kahl B, Antonarakis SE, Tavaré S, Deloukas P, Dermitzakis ET. Genome-wide associations of gene expression variation in humans. Plos Genetics. 1: e78. PMID 16362079 DOI: 10.1371/Journal.Pgen.0010078  0.64
2005 Stranger BE, Dermitzakis ET. The genetics of regulatory variation in the human genome. Human Genomics. 2: 126-31. PMID 16004727  0.64
2005 Stranger BE, Mitchell-Olds T. Nucleotide variation at the myrosinase-encoding locus, TGG1, and quantitative myrosinase enzyme activity variation in Arabidopsis thaliana. Molecular Ecology. 14: 295-309. PMID 15643972 DOI: 10.1111/J.1365-294X.2004.02403.X  0.64
2004 Ramos-Onsins SE, Stranger BE, Mitchell-Olds T, Aguadé M. Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata. Genetics. 166: 373-88. PMID 15020431 DOI: 10.1534/Genetics.166.1.373  0.64
2002 Kuittinen H, Aguadé M, Charlesworth D, Haan ADE, Lauga B, Mitchell-Olds T, Oikarinen S, Ramos-Onsins S, Stranger B, Van Tienderen P, Savolainen O. Primers for 22 candidate genes for ecological adaptations in Brassicaceae Molecular Ecology Notes. 2: 258-262. DOI: 10.1046/J.1471-8286.2002.00210.X  0.64
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