| Year |
Citation |
Score |
| 2022 |
McLay TGB, Murphy DJ, Holmes GD, Mathews S, Brown GK, Cantrill DJ, Udovicic F, Allnutt TR, Jackson CJ. A genome resource for Acacia, Australia's largest plant genus. Plos One. 17: e0274267. PMID 36240205 DOI: 10.1371/journal.pone.0274267 |
0.343 |
|
| 2021 |
Cai L, Arnold BJ, Xi Z, Khost DE, Patel N, Hartmann CB, Manickam S, Sasirat S, Nikolov LA, Mathews S, Sackton TB, Davis CC. Deeply Altered Genome Architecture in the Endoparasitic Flowering Plant Sapria himalayana Griff. (Rafflesiaceae). Current Biology : Cb. PMID 33485466 DOI: 10.1016/j.cub.2020.12.045 |
0.386 |
|
| 2020 |
Povilus RA, DaCosta JM, Grassa C, Satyaki PRV, Moeglein M, Jaenisch J, Xi Z, Mathews S, Gehring M, Davis CC, Friedman WE. Water lily () genome reveals variable genomic signatures of ancient vascular cambium losses. Proceedings of the National Academy of Sciences of the United States of America. PMID 32234787 DOI: 10.1073/Pnas.1922873117 |
0.475 |
|
| 2019 |
Sundaram M, Donoghue MJ, Farjon A, Filer D, Mathews S, Jetz W, Leslie AB. Accumulation over evolutionary time as a major cause of biodiversity hotspots in conifers. Proceedings. Biological Sciences. 286: 20191887. PMID 31594500 DOI: 10.1098/Rspb.2019.1887 |
0.355 |
|
| 2019 |
Li FW, Mathews S. Phylogenetic Methods to Study Light Signaling. Methods in Molecular Biology (Clifton, N.J.). 2026: 265-276. PMID 31317419 DOI: 10.1007/978-1-4939-9612-4_21 |
0.314 |
|
| 2018 |
Lu L, Cox CJ, Mathews S, Wang W, Wen J, Chen Z. Optimal data partitioning, multispecies coalescent and Bayesian concordance analyses resolve early divergences of the grape family (Vitaceae). Cladistics : the International Journal of the Willi Hennig Society. 34: 57-77. PMID 34641639 DOI: 10.1111/cla.12191 |
0.341 |
|
| 2018 |
Leslie AB, Beaulieu J, Holman G, Campbell CS, Mei W, Raubeson LR, Mathews S. An overview of extant conifer evolution from the perspective of the fossil record. American Journal of Botany. PMID 30157290 DOI: 10.1002/Ajb2.1143 |
0.365 |
|
| 2018 |
Dean GH, Asmarayani R, Ardiyani M, Santika Y, Triono T, Mathews S, Webb CO. Generating DNA sequence data with limited resources for molecular biology: Lessons from a barcoding project in Indonesia. Applications in Plant Sciences. 6: e01167. PMID 30131909 DOI: 10.1002/Aps3.1167 |
0.338 |
|
| 2018 |
Forest F, Moat J, Baloch E, Brummitt NA, Bachman SP, Ickert-Bond S, Hollingsworth PM, Liston A, Little DP, Mathews S, Rai H, Rydin C, Stevenson DW, Thomas P, Buerki S. Gymnosperms on the EDGE. Scientific Reports. 8: 6053. PMID 29662101 DOI: 10.1038/S41598-018-24365-4 |
0.319 |
|
| 2018 |
Lu LM, Mao LF, Yang T, Ye JF, Liu B, Li HL, Sun M, Miller JT, Mathews S, Hu HH, Niu YT, Peng DX, Chen YH, Smith SA, Chen M, et al. Evolutionary history of the angiosperm flora of China. Nature. 554: 234-238. PMID 29420476 DOI: 10.1038/Nature25485 |
0.353 |
|
| 2017 |
Leslie AB, Beaulieu JM, Mathews S. Variation in seed size is structured by dispersal syndrome and cone morphology in conifers and other nonflowering seed plants. The New Phytologist. PMID 28185279 DOI: 10.1111/Nph.14456 |
0.306 |
|
| 2017 |
Rockwell NC, Martin SS, Li FW, Mathews S, Lagarias JC. The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2. The New Phytologist. PMID 28106912 DOI: 10.1111/nph.14422 |
0.329 |
|
| 2016 |
Li FW, Mathews S. Evolutionary aspects of plant photoreceptors. Journal of Plant Research. PMID 26843269 DOI: 10.1007/s10265-016-0785-4 |
0.37 |
|
| 2015 |
Li FW, Rothfels CJ, Melkonian M, Villarreal JC, Stevenson DW, Graham SW, Wong GK, Mathews S, Pryer KM. The origin and evolution of phototropins. Frontiers in Plant Science. 6: 637. PMID 26322073 DOI: 10.3389/Fpls.2015.00637 |
0.421 |
|
| 2015 |
Li FW, Melkonian M, Rothfels CJ, Villarreal JC, Stevenson DW, Graham SW, Wong GK, Pryer KM, Mathews S. Phytochrome diversity in green plants and the origin of canonical plant phytochromes. Nature Communications. 6: 7852. PMID 26215968 DOI: 10.1038/Ncomms8852 |
0.49 |
|
| 2015 |
Ruhsam M, Rai HS, Mathews S, Ross TG, Graham SW, Raubeson LA, Mei W, Thomas PI, Gardner MF, Ennos RA, Hollingsworth PM. Does complete plastid genome sequencing improve species discrimination and phylogenetic resolution in Araucaria? Molecular Ecology Resources. PMID 25611173 DOI: 10.1111/1755-0998.12375 |
0.493 |
|
| 2015 |
Hertweck KL, Kinney MS, Stuart SA, Maurin O, Mathews S, Chase MW, Gandolfo MA, Pires JC. Phylogenetics, divergence times and diversification from three genomic partitions in monocots Botanical Journal of the Linnean Society. 178: 375-393. DOI: 10.1111/Boj.12260 |
0.506 |
|
| 2014 |
Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, ... ... Mathews S, et al. Data access for the 1,000 Plants (1KP) project. Gigascience. 3: 17. PMID 25625010 DOI: 10.1186/2047-217X-3-17 |
0.464 |
|
| 2014 |
Lagomarsino LP, Antonelli A, Muchhala N, Timmermann A, Mathews S, Davis CC. Phylogeny, classification, and fruit evolution of the species-rich Neotropical bellflowers (Campanulaceae: Lobelioideae). American Journal of Botany. 101: 2097-112. PMID 25480707 DOI: 10.3732/Ajb.1400339 |
0.401 |
|
| 2014 |
Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, et al. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proceedings of the National Academy of Sciences of the United States of America. 111: E4859-68. PMID 25355905 DOI: 10.1073/Pnas.1323926111 |
0.545 |
|
| 2014 |
Mathews S. Algae hold clues to eukaryotic origins of plant phytochromes Proceedings of the National Academy of Sciences of the United States of America. 111: 15608-15609. PMID 25349430 DOI: 10.1073/pnas.1417990111 |
0.325 |
|
| 2014 |
Li FW, Villarreal JC, Kelly S, Rothfels CJ, Melkonian M, Frangedakis E, Ruhsam M, Sigel EM, Der JP, Pittermann J, Burge DO, Pokorny L, Larsson A, Chen T, Weststrand S, ... ... Mathews S, et al. Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. Proceedings of the National Academy of Sciences of the United States of America. 111: 6672-7. PMID 24733898 DOI: 10.1073/Pnas.1319929111 |
0.473 |
|
| 2014 |
Davis CC, Xi Z, Mathews S. Plastid phylogenomics and green plant phylogeny: almost full circle but not quite there. Bmc Biology. 12: 11. PMID 24533863 DOI: 10.1186/1741-7007-12-11 |
0.474 |
|
| 2013 |
McNeal JR, Bennett JR, Wolfe AD, Mathews S. Phylogeny and origins of holoparasitism in Orobanchaceae. American Journal of Botany. 100: 971-83. PMID 23608647 DOI: 10.3732/Ajb.1200448 |
0.443 |
|
| 2012 |
Xi Z, Ruhfel BR, Schaefer H, Amorim AM, Sugumaran M, Wurdack KJ, Endress PK, Matthews ML, Stevens PF, Mathews S, Davis CC. Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales. Proceedings of the National Academy of Sciences of the United States of America. 109: 17519-24. PMID 23045684 DOI: 10.1073/Pnas.1205818109 |
0.483 |
|
| 2012 |
Leslie AB, Beaulieu JM, Rai HS, Crane PR, Donoghue MJ, Mathews S. Hemisphere-scale differences in conifer evolutionary dynamics. Proceedings of the National Academy of Sciences of the United States of America. 109: 16217-21. PMID 22988083 DOI: 10.1073/Pnas.1213621109 |
0.412 |
|
| 2012 |
Mathews S, Kramer EM. The evolution of reproductive structures in seed plants: a re-examination based on insights from developmental genetics. The New Phytologist. 194: 910-23. PMID 22413867 DOI: 10.1111/J.1469-8137.2012.04091.X |
0.353 |
|
| 2012 |
Mathews S, Tremonte D. Tests of the link between functional innovation and positive selection at phytochrome a: The phylogenetic distribution of far-red high-irradiance responses in seedling development International Journal of Plant Sciences. 173: 662-672. DOI: 10.1086/665975 |
0.457 |
|
| 2011 |
Nagalingum NS, Marshall CR, Quental TB, Rai HS, Little DP, Mathews S. Recent synchronous radiation of a living fossil. Science (New York, N.Y.). 334: 796-9. PMID 22021670 DOI: 10.1126/Science.1209926 |
0.47 |
|
| 2010 |
Beilstein MA, Nagalingum NS, Clements MD, Manchester SR, Mathews S. Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 107: 18724-8. PMID 20921408 DOI: 10.1073/Pnas.0909766107 |
0.535 |
|
| 2010 |
Mathews S. Evolutionary studies illuminate the structural-functional model of plant phytochromes Plant Cell. 22: 4-16. PMID 20118225 DOI: 10.1105/Tpc.109.072280 |
0.488 |
|
| 2010 |
Mathews S, Clements MD, Beilstein MA. A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 383-95. PMID 20047866 DOI: 10.1098/Rstb.2009.0233 |
0.556 |
|
| 2009 |
Mathews S. Phylogenetic relationships among seed plants: Persistent questions and the limits of molecular data. American Journal of Botany. 96: 228-36. PMID 21628186 DOI: 10.3732/Ajb.0800178 |
0.536 |
|
| 2009 |
Kolmos E, Nowak M, Werner M, Fischer K, Schwarz G, Mathews S, Schoof H, Nagy F, Bujnicki JM, Davis SJ. Integrating ELF4 into the circadian system through combined structural and functional studies. Hfsp Journal. 3: 350-66. PMID 20357892 DOI: 10.2976/1.3218766 |
0.377 |
|
| 2008 |
Beilstein MA, Al-Shehbaz IA, Mathews S, Kellogg EA. Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data: tribes and trichomes revisited. American Journal of Botany. 95: 1307-27. PMID 21632335 DOI: 10.3732/Ajb.0800065 |
0.537 |
|
| 2008 |
Mathews S, McBreen K. Phylogenetic relationships of B-related phytochromes in the Brassicaceae: Redundancy and the persistence of phytochrome D. Molecular Phylogenetics and Evolution. 49: 411-23. PMID 18768161 DOI: 10.1016/J.Ympev.2008.07.026 |
0.487 |
|
| 2007 |
Saarela JM, Rai HS, Doyle JA, Endress PK, Mathews S, Marchant AD, Briggs BG, Graham SW. Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree. Nature. 446: 312-5. PMID 17361182 DOI: 10.1038/Nature05612 |
0.531 |
|
| 2007 |
Burleigh JG, Mathews S. Assessing systematic error in the inference of seed plant phylogeny International Journal of Plant Sciences. 168: 125-135. DOI: 10.1086/509588 |
0.464 |
|
| 2007 |
Burleigh JG, Mathews S. Assessing among-locus variation in the inference of seed plant phylogeny International Journal of Plant Sciences. 168: 111-124. DOI: 10.1086/509586 |
0.47 |
|
| 2006 |
Bennett JR, Mathews S. Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome A. American Journal of Botany. 93: 1039-51. PMID 21642169 DOI: 10.3732/Ajb.93.7.1039 |
0.543 |
|
| 2006 |
Mathews S. Phytochrome-mediated development in land plants: Red light sensing evolves to meet the challenges of changing light environments Molecular Ecology. 15: 3483-3503. PMID 17032252 DOI: 10.1111/J.1365-294X.2006.03051.X |
0.455 |
|
| 2006 |
Mathews S. Seeing the light Nature Genetics. 38: 606-608. PMID 16736011 DOI: 10.1038/Ng0606-606 |
0.429 |
|
| 2005 |
Theuri J, Phelps-Durr T, Mathews S, Birchler J. A comparative study of retrotransposons in the centromeric regions of A and B chromosomes of maize Cytogenetic and Genome Research. 110: 203-208. PMID 16093673 DOI: 10.1159/000084953 |
0.302 |
|
| 2005 |
Mathews S. Analytical methods for studying the evolution of paralogs using duplicate gene datasets Methods in Enzymology. 395: 724-745. PMID 15865992 DOI: 10.1016/S0076-6879(05)95037-4 |
0.323 |
|
| 2005 |
Mathews S. Phytochrome evolution in green and nongreen plants Journal of Heredity. 96: 197-204. PMID 15695552 DOI: 10.1093/Jhered/Esi032 |
0.476 |
|
| 2004 |
Burleigh JG, Mathews S. Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life. American Journal of Botany. 91: 1599-613. PMID 21652311 DOI: 10.3732/Ajb.91.10.1599 |
0.487 |
|
| 2004 |
Provan J, Biss PM, McMeel D, Mathews S. Universal primers for the amplification of chloroplast microsatellites in grasses (Poaceae) Molecular Ecology Notes. 4: 262-264. DOI: 10.1111/J.1471-8286.2004.00636.X |
0.398 |
|
| 2004 |
Davis CC, Fritsch PW, Bell CD, Mathews S, Arboretum A. High‐Latitude Tertiary Migrations of an Exclusively Tropical Clade: Evidence from Malpighiaceae International Journal of Plant Sciences. 165. DOI: 10.1086/383337 |
0.362 |
|
| 2003 |
Mathews S, Burleigh JG, Donoghue MJ. Adaptive evolution in the photosensory domain of phytochrome A in early angiosperms. Molecular Biology and Evolution. 20: 1087-97. PMID 12777523 DOI: 10.1093/Molbev/Msg123 |
0.438 |
|
| 2002 |
Davis CC, Bell CD, Fritsch PW, Mathews S. Phylogeny of Acridocarpus-Brachylophon (Malpighiaceae): implications for tertiary tropical floras and Afroasian biogeography. Evolution; International Journal of Organic Evolution. 56: 2395-405. PMID 12583580 DOI: 10.1111/J.0014-3820.2002.Tb00165.X |
0.477 |
|
| 2002 |
Zanis MJ, Soltis DE, Soltis PS, Mathews S, Donoghue MJ. The root of the angiosperms revisited. Proceedings of the National Academy of Sciences of the United States of America. 99: 6848-53. PMID 12011443 DOI: 10.1073/Pnas.092136399 |
0.454 |
|
| 2002 |
Davis CC, Bell CD, Mathews S, Donoghue MJ. Laurasian migration explains Gondwanan disjunctions: evidence from Malpighiaceae. Proceedings of the National Academy of Sciences of the United States of America. 99: 6833-7. PMID 11983870 DOI: 10.1073/Pnas.102175899 |
0.378 |
|
| 2002 |
Mathews S, Spangler RE, Mason-Gamer RJ, Kellogg EA. Phylogeny of andropogoneae inferred from phytochrome B, GBSSI, and NDHF International Journal of Plant Sciences. 163: 441-450. DOI: 10.1086/339155 |
0.466 |
|
| 2001 |
Barker NP, Clark LG, Davis JI, Duvall MR, Guala GF, Hsiao C, Kellogg EA, Linder P, Mason-Garner RJ, Mathews SY, Simmons MP, Soreng RJ, Spangler RE. Phylogeny and subfamilial classification of the grasses (Poaceae) Annals of the Missouri Botanical Garden. 88: 373-457. DOI: 10.2307/3298585 |
0.308 |
|
| 2001 |
Simmons MP, Clevinger CC, Savolainen V, Archer RH, Mathews S, Doyle JJ. Phylogeny of the celastraceae inferred from phytochrome B gene sequence and morphology American Journal of Botany. 88: 313-325. DOI: 10.2307/2657021 |
0.438 |
|
| 2000 |
Clark LG, Kobayashi M, Mathews S, Spangler RE, Kellogg EA. The Puelioideae, a new subfamily of Poaceae Systematic Botany. 25: 181-187. DOI: 10.2307/2666637 |
0.45 |
|
| 2000 |
Mathews S, Tsai RC, Kellogg EA. Phylogenetic structure in the grass family (Poaceae): evidence from the nuclear gene phytochrome B. American Journal of Botany. 87: 96-107. DOI: 10.2307/2656688 |
0.513 |
|
| 2000 |
Mathews S, Donoghue M. Basal Angiosperm Phylogeny Inferred from Duplicate Phytochromes A and C International Journal of Plant Sciences. 161: S41-S55. DOI: 10.1086/317582 |
0.488 |
|
| 1999 |
Mathews S, Donoghue MJ. The root of angiosperm phylogeny inferred from duplicate phytochrome genes Science. 286: 947-950. PMID 10542147 DOI: 10.1126/Science.286.5441.947 |
0.513 |
|
| 1998 |
Donoghue MJ, Mathews S. Duplicate Genes and the Root of Angiosperms, with an Example Using Phytochrome Sequences Molecular Phylogenetics and Evolution. 9: 489-500. PMID 9667997 DOI: 10.1006/Mpev.1998.0511 |
0.527 |
|
| 1998 |
Lavin M, Eshbaugh E, Hu J, Mathews S, Sharrock RA. Monophyletic subgroups of the tribe Millettieae (Leguminosae) as revealed by phytochrome nucleotide sequence data American Journal of Botany. 85: 412-433. DOI: 10.2307/2446334 |
0.371 |
|
| 1998 |
Mathews S, Lavin M. A biosystematic study of Castilleja crista-galli (Scrophulariaceae): an allopolyploid origin reexamined Systematic Botany. 23: 213-230. DOI: 10.2307/2419589 |
0.426 |
|
| 1997 |
Mathews S, Sharrock RA. Phytochrome gene diversity Plant Cell and Environment. 20: 666-671. DOI: 10.1046/J.1365-3040.1997.D01-117.X |
0.543 |
|
| 1996 |
Mathews S, Sharrock RA. The phytochrome gene family in grasses (Poaceae): A phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms Molecular Biology and Evolution. 13: 1141-1150. PMID 8865668 DOI: 10.1093/Oxfordjournals.Molbev.A025677 |
0.528 |
|
| 1995 |
Mathews S, Lavin M, Sharrock RA. Evolution of the Phytochrome Gene Family and Its Utility for Phylogenetic Analyses of Angiosperms Annals of the Missouri Botanical Garden. 82: 296-321. DOI: 10.2307/2399882 |
0.412 |
|
| 1994 |
Clack T, Mathews S, Sharrock RA. The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE Plant Molecular Biology. 25: 413-427. PMID 8049367 DOI: 10.1007/Bf00043870 |
0.494 |
|
| 1991 |
Lavin M, Mathews S, Hughes C. Chloroplast DNA variation in Gliricidia sepium (Leguminosae) : intraspecific phylogeny and tokogeny American Journal of Botany. 78: 1576-1585. DOI: 10.1002/J.1537-2197.1991.Tb11437.X |
0.424 |
|
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