| Year |
Citation |
Score |
| 2016 |
Krishnan A, Zhang R, Yao V, Theesfeld CL, Wong AK, Tadych A, Volfovsky N, Packer A, Lash A, Troyanskaya OG. Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder. Nature Neuroscience. PMID 27479844 DOI: 10.1038/Nn.4353 |
0.393 |
|
| 2016 |
Baugh EH, Simmons-Edler R, Müller CL, Alford RF, Volfovsky N, Lash AE, Bonneau R. Robust classification of protein variation using structural modelling and large-scale data integration. Nucleic Acids Research. PMID 26926108 DOI: 10.1093/Nar/Gkw120 |
0.351 |
|
| 2014 |
Yang H, Volfovsky N, Rattray A, Chen X, Tanaka H, Strathern J. GAP-Seq: a method for identification of DNA palindromes. Bmc Genomics. 15: 394. PMID 24885769 DOI: 10.1186/1471-2164-15-394 |
0.457 |
|
| 2014 |
Vuong H, Stephens RM, Volfovsky N. AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations. Bioinformatics (Oxford, England). 30: 1013-4. PMID 24215028 DOI: 10.1186/1753-6561-6-S6-P37 |
0.445 |
|
| 2013 |
Bacolla A, Temiz NA, Yi M, Ivanic J, Cer RZ, Donohue DE, Ball EV, Mudunuri US, Wang G, Jain A, Volfovsky N, Luke BT, Stephens RM, Cooper DN, Collins JR, et al. Guanine holes are prominent targets for mutation in cancer and inherited disease. Plos Genetics. 9: e1003816. PMID 24086153 DOI: 10.1371/Journal.Pgen.1003816 |
0.373 |
|
| 2013 |
Hudson RS, Yi M, Volfovsky N, Prueitt RL, Esposito D, Volinia S, Liu CG, Schetter AJ, Van Roosbroeck K, Stephens RM, Calin GA, Croce CM, Ambs S. Transcription signatures encoded by ultraconserved genomic regions in human prostate cancer. Molecular Cancer. 12: 13. PMID 23409773 DOI: 10.1186/1476-4598-12-13 |
0.321 |
|
| 2013 |
Cer RZ, Donohue DE, Mudunuri US, Temiz NA, Loss MA, Starner NJ, Halusa GN, Volfovsky N, Yi M, Luke BT, Bacolla A, Collins JR, Stephens RM. Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools. Nucleic Acids Research. 41: D94-D100. PMID 23125372 DOI: 10.1093/Nar/Gks955 |
0.44 |
|
| 2013 |
Yang H, Volfovsky N, Rattray A, Chen X, Tanaka H, Jeffrey S. Abstract LB-233: Identification of DNA palindromes in the MCF-7 breast cancer cell line. Cancer Research. 73. DOI: 10.1158/1538-7445.Am2013-Lb-233 |
0.423 |
|
| 2012 |
Cer RZ, Bruce KH, Donohue DE, Temiz NA, Mudunuri US, Yi M, Volfovsky N, Bacolla A, Luke BT, Collins JR, Stephens RM. Searching for non-B DNA-forming motifs using nBMST (non-B DNA motif search tool). Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. Unit 18.7.1-22. PMID 22470144 DOI: 10.1002/0471142905.Hg1807S73 |
0.417 |
|
| 2011 |
Tolstorukov MY, Volfovsky N, Stephens RM, Park PJ. Impact of chromatin structure on sequence variability in the human genome. Nature Structural & Molecular Biology. 18: 510-5. PMID 21399641 DOI: 10.1038/Nsmb.2012 |
0.465 |
|
| 2011 |
Cer RZ, Bruce KH, Mudunuri US, Yi M, Volfovsky N, Luke BT, Bacolla A, Collins JR, Stephens RM. Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes. Nucleic Acids Research. 39: D383-91. PMID 21097885 DOI: 10.1093/Nar/Gkq1170 |
0.503 |
|
| 2011 |
Cer R, Bruce K, Donohue D, Temiz NA, Bacolla A, Mudunuri U, Yi M, Volfovsky N, Luke B, Collins J, Stephens R. The non-B DNA motif search tool (nBMST) F1000research. 2. DOI: 10.7490/F1000Research.1089430.1 |
0.323 |
|
| 2011 |
Cer RZ, Bruce KH, Donohue DE, Temiz AN, Bacolla A, Mudunuri US, Yi M, Volfovsky N, Luke BT, Collins JR, Stephens RM. Introducing the non-B DNA Motif Search Tool (nBMST) Genome Biology. 12: P34. DOI: 10.1186/Gb-2011-12-S1-P34 |
0.486 |
|
| 2010 |
Marshall V, Martró E, Labo N, Ray A, Wang D, Mbisa G, Bagni RK, Volfovsky N, Casabona J, Whitby D. Kaposi sarcoma (KS)-associated herpesvirus microRNA sequence analysis and KS risk in a European AIDS-KS case control study. The Journal of Infectious Diseases. 202: 1126-35. PMID 20715927 DOI: 10.1086/656045 |
0.322 |
|
| 2010 |
Akagi K, Stephens RM, Li J, Evdokimov E, Kuehn MR, Volfovsky N, Symer DE. MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains. Nucleic Acids Research. 38: D600-6. PMID 19933259 DOI: 10.1093/nar/gkp1046 |
0.401 |
|
| 2009 |
Volfovsky N, Oleksyk TK, Cruz KC, Truelove AL, Stephens RM, Smith MW. Genome and gene alterations by insertions and deletions in the evolution of human and chimpanzee chromosome 22. Bmc Genomics. 10: 51. PMID 19171065 DOI: 10.1186/1471-2164-10-51 |
0.46 |
|
| 2008 |
Akagi K, Li J, Stephens RM, Volfovsky N, Symer DE. Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition. Genome Research. 18: 869-80. PMID 18381897 DOI: 10.1101/Gr.075770.107 |
0.429 |
|
| 2008 |
Huppi K, Volfovsky N, Runfola T, Jones TL, Mackiewicz M, Martin SE, Mushinski JF, Stephens R, Caplen NJ. The identification of microRNAs in a genomically unstable region of human chromosome 8q24. Molecular Cancer Research : McR. 6: 212-21. PMID 18314482 DOI: 10.1158/1541-7786.Mcr-07-0105 |
0.319 |
|
| 2007 |
Pontius JU, Mullikin JC, Smith DR, Lindblad-Toh K, Gnerre S, Clamp M, Chang J, Stephens R, Neelam B, Volfovsky N, Schäffer AA, Agarwala R, Narfström K, Murphy WJ, et al. Initial sequence and comparative analysis of the cat genome. Genome Research. 17: 1675-89. PMID 17975172 DOI: 10.1101/Gr.6380007 |
0.52 |
|
| 2007 |
Huppi K, Volfovsky N, Mackiewicz M, Runfola T, Jones TL, Martin SE, Stephens R, Caplen NJ. MicroRNAs and genomic instability. Seminars in Cancer Biology. 17: 65-73. PMID 17113784 DOI: 10.1016/J.Semcancer.2006.10.004 |
0.362 |
|
| 2003 |
Volfovsky N, Haas BJ, Salzberg SL. Computational discovery of internal micro-exons. Genome Research. 13: 1216-21. PMID 12799353 DOI: 10.1101/Gr.677503 |
0.573 |
|
| 2002 |
Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biology. 3: RESEARCH0029. PMID 12093376 DOI: 10.1186/Gb-2002-3-6-Research0029 |
0.577 |
|
| 2001 |
Volfovsky N, Haas BJ, Salzberg SL. A clustering method for repeat analysis in DNA sequences Genome Biology. 2: 1-11. PMID 11532211 DOI: 10.1186/Gb-2001-2-8-Research0027 |
0.466 |
|
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