| Year |
Citation |
Score |
| 2024 |
Li Z, Iida J, Shiimori M, Okamura K. Exportin-5 binding precedes 5'- and 3'-end processing of tRNA precursors in Drosophila. The Journal of Biological Chemistry. 107632. PMID 39098529 DOI: 10.1016/j.jbc.2024.107632 |
0.514 |
|
| 2023 |
Ho WY, Chak LL, Hor JH, Liu F, Diaz-Garcia S, Chang JC, Sanford E, Rodriguez MJ, Alagappan D, Lim SM, Cho YL, Shimizu Y, Sun AX, Tyan SH, Koo E, ... ... Okamura K, et al. FUS-dependent microRNA deregulations identify TRIB2 as a druggable target for ALS motor neurons. Iscience. 26: 108152. PMID 37920668 DOI: 10.1016/j.isci.2023.108152 |
0.401 |
|
| 2023 |
Feng C, Torimaru K, Lim MYT, Chak LL, Shiimori M, Tsuji K, Tanaka T, Iida J, Okamura K. A novel eukaryotic RdRP-dependent small RNA pathway represses antiviral immunity by controlling an ERK pathway component in the black-legged tick. Plos One. 18: e0281195. PMID 36996253 DOI: 10.1371/journal.pone.0281195 |
0.387 |
|
| 2019 |
Ong AAL, Toh DK, Krishna MS, Patil KM, Okamura K, Chen G. Incorporating 2-thiouracil into short dsRNA-binding PNAs for enhanced recognition of A-U pairs and for targeting a microRNA hairpin precursor. Biochemistry. PMID 31318532 DOI: 10.1021/Acs.Biochem.9B00521 |
0.3 |
|
| 2019 |
Ong AAL, Toh DK, Patil KM, Meng Z, Yuan Z, Krishna MS, Devi G, Haruehanroengra P, Lu Y, Xia K, Okamura K, Sheng J, Chen G. General recognition of U-G, U-A, and C-G pairs by double-stranded RNA-binding PNAs (dbPNAs) incorporated with an artificial nucleobase. Biochemistry. PMID 30775913 DOI: 10.1021/Acs.Biochem.8B01313 |
0.345 |
|
| 2018 |
Goh E, Okamura K. Hidden sequence specificity in loading of single-stranded RNAs onto Drosophila Argonautes. Nucleic Acids Research. PMID 30590701 DOI: 10.1093/Nar/Gky1300 |
0.452 |
|
| 2018 |
Zhou L, Lim MY, Kaur P, Saj A, Bortolamiol-Becet D, Gopal V, Tolwinski N, Tucker-Kellogg G, Okamura K. Importance of miRNA stability and alternative primary miRNA isoforms in gene regulation during development. Elife. 7. PMID 30024380 DOI: 10.7554/Elife.38389 |
0.565 |
|
| 2018 |
Teo RYW, Anand A, Sridhar V, Okamura K, Kai T. Heterochromatin protein 1a functions for piRNA biogenesis predominantly from pericentric and telomeric regions in Drosophila. Nature Communications. 9: 1735. PMID 29728561 DOI: 10.1038/S41467-018-03908-3 |
0.363 |
|
| 2018 |
Goh E, Okamura K. Gateway to Understanding Argonaute Loading of Single-Stranded RNAs: Preparation of Deep Sequencing Libraries with In Vitro Loading Samples. Methods in Molecular Biology (Clifton, N.J.). 1680: 41-63. PMID 29030840 DOI: 10.1007/978-1-4939-7339-2_3 |
0.456 |
|
| 2018 |
Zhou L, Lim MYT, Kaur P, Saj A, Bortolamiol-Becet D, Gopal V, Tolwinski N, Tucker-Kellogg G, Okamura K. Author response: Importance of miRNA stability and alternative primary miRNA isoforms in gene regulation during Drosophila development Elife. DOI: 10.7554/Elife.38389.048 |
0.534 |
|
| 2017 |
Lim MYT, Okamura K. Switches in Dicer Activity During Oogenesis and Early Development. Results and Problems in Cell Differentiation. 63: 325-351. PMID 28779324 DOI: 10.1007/978-3-319-60855-6_14 |
0.571 |
|
| 2016 |
Lim MY, Ng AW, Chou Y, Lim TP, Simcox A, Tucker-Kellogg G, Okamura K. The Drosophila Dicer-1 Partner Loquacious Enhances miRNA Processing from Hairpins with Unstable Structures at the Dicing Site. Cell Reports. PMID 27184838 DOI: 10.1016/J.Celrep.2016.04.059 |
0.563 |
|
| 2015 |
Pek JW, Okamura K. Regulatory RNAs discovered in unexpected places. Wiley Interdisciplinary Reviews. Rna. 6: 671-86. PMID 26424536 DOI: 10.1002/Wrna.1309 |
0.457 |
|
| 2015 |
Bortolamiol-Becet D, Hu F, Jee D, Wen J, Okamura K, Lin CJ, Ameres SL, Lai EC. Selective Suppression of the Splicing-Mediated MicroRNA Pathway by the Terminal Uridyltransferase Tailor. Molecular Cell. PMID 26145174 DOI: 10.1016/J.Molcel.2015.05.034 |
0.688 |
|
| 2015 |
Chak LL, Mohammed J, Lai EC, Tucker-Kellogg G, Okamura K. A deeply conserved, noncanonical miRNA hosted by ribosomal DNA. Rna (New York, N.Y.). 21: 375-84. PMID 25605965 DOI: 10.1261/Rna.049098.114 |
0.69 |
|
| 2015 |
Wen J, Duan H, Bejarano F, Okamura K, Fabian L, Brill JA, Bortolamiol-Becet D, Martin R, Ruby JG, Lai EC. Adaptive regulation of testis gene expression and control of male fertility by the Drosophila harpin RNA pathway. Molecular Cell. 57: 165-78. PMID 25544562 DOI: 10.1016/J.Molcel.2014.11.025 |
0.61 |
|
| 2014 |
Hu F, Lai EC, Okamura K. A signaling-induced switch in dicer localization and function. Developmental Cell. 31: 523-4. PMID 25490263 DOI: 10.1016/J.Devcel.2014.11.032 |
0.503 |
|
| 2014 |
Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, et al. Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines. Genome Research. 24: 1236-50. PMID 24985917 DOI: 10.1101/Gr.161554.113 |
0.763 |
|
| 2014 |
Chak LL, Okamura K. Argonaute-dependent small RNAs derived from single-stranded, non-structured precursors. Frontiers in Genetics. 5: 172. PMID 24959173 DOI: 10.3389/Fgene.2014.00172 |
0.51 |
|
| 2013 |
Okamura K. Argonaute reformatting. Molecular Cell. 50: 305-6. PMID 23664373 DOI: 10.1016/j.molcel.2013.04.019 |
0.397 |
|
| 2013 |
Okamura K, Ladewig E, Zhou L, Lai EC. Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals. Genes & Development. 27: 778-92. PMID 23535236 DOI: 10.1101/Gad.211698.112 |
0.696 |
|
| 2012 |
Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC. Discovery of hundreds of mirtrons in mouse and human small RNA data. Genome Research. 22: 1634-45. PMID 22955976 DOI: 10.1101/Gr.133553.111 |
0.784 |
|
| 2012 |
Westholm JO, Ladewig E, Okamura K, Robine N, Lai EC. Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs. Rna (New York, N.Y.). 18: 177-92. PMID 22190743 DOI: 10.1261/Rna.030627.111 |
0.769 |
|
| 2012 |
Okamura K. Diversity of animal small RNA pathways and their biological utility. Wiley Interdisciplinary Reviews. Rna. 3: 351-68. PMID 22086843 DOI: 10.1002/Wrna.113 |
0.606 |
|
| 2011 |
Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, et al. Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Genome Research. 21: 203-15. PMID 21177969 DOI: 10.1101/Gr.116657.110 |
0.78 |
|
| 2011 |
Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC. Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans. Genome Research. 21: 286-300. PMID 21177960 DOI: 10.1101/Gr.113050.110 |
0.763 |
|
| 2011 |
Okamura K, Robine N, Liu Y, Liu Q, Lai EC. R2D2 organizes small regulatory RNA pathways in Drosophila. Molecular and Cellular Biology. 31: 884-96. PMID 21135122 DOI: 10.1128/Mcb.01141-10 |
0.795 |
|
| 2010 |
Hain D, Bettencourt BR, Okamura K, Csorba T, Meyer W, Jin Z, Biggerstaff J, Siomi H, Hutvagner G, Lai EC, Welte M, Müller HA. Natural variation of the amino-terminal glutamine-rich domain in Drosophila argonaute2 is not associated with developmental defects. Plos One. 5: e15264. PMID 21253006 DOI: 10.1371/Journal.Pone.0015264 |
0.545 |
|
| 2010 |
Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... Okamura K, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/Science.1198374 |
0.741 |
|
| 2010 |
Okamura K, Lai EC. A deathly DNase activity for dicer. Developmental Cell. 18: 692-4. PMID 20493803 DOI: 10.1016/J.Devcel.2010.05.004 |
0.435 |
|
| 2009 |
Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC. A broadly conserved pathway generates 3'UTR-directed primary piRNAs. Current Biology : Cb. 19: 2066-76. PMID 20022248 DOI: 10.1016/J.Cub.2009.11.064 |
0.743 |
|
| 2009 |
Okamura K, Lai EC. [Diversity and complexity of dicer dependent small RNA networks in animals]. Seikagaku. the Journal of Japanese Biochemical Society. 81: 904-9. PMID 19928532 |
0.497 |
|
| 2009 |
Okamura K, Liu N, Lai EC. Distinct mechanisms for microRNA strand selection by Drosophila Argonautes. Molecular Cell. 36: 431-44. PMID 19917251 DOI: 10.1016/J.Molcel.2009.09.027 |
0.681 |
|
| 2008 |
Okamura K, Balla S, Martin R, Liu N, Lai EC. Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster. Nature Structural & Molecular Biology. 15: 998. PMID 18769470 DOI: 10.1038/nsmb0908-998c |
0.451 |
|
| 2008 |
Okamura K, Chung WJ, Lai EC. The long and short of inverted repeat genes in animals: microRNAs, mirtrons and hairpin RNAs. Cell Cycle (Georgetown, Tex.). 7: 2840-5. PMID 18769156 DOI: 10.4161/Cc.7.18.6734 |
0.717 |
|
| 2008 |
Okamura K, Lai EC. Endogenous small interfering RNAs in animals. Nature Reviews. Molecular Cell Biology. 9: 673-8. PMID 18719707 DOI: 10.1038/Nrm2479 |
0.611 |
|
| 2008 |
Liu N, Okamura K, Tyler DM, Phillips MD, Chung WJ, Lai EC. The evolution and functional diversification of animal microRNA genes. Cell Research. 18: 985-96. PMID 18711447 DOI: 10.1038/Cr.2008.278 |
0.678 |
|
| 2008 |
Chung WJ, Okamura K, Martin R, Lai EC. Endogenous RNA interference provides a somatic defense against Drosophila transposons. Current Biology : Cb. 18: 795-802. PMID 18501606 DOI: 10.1016/J.Cub.2008.05.006 |
0.619 |
|
| 2008 |
Okamura K, Balla S, Martin R, Liu N, Lai EC. Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster. Nature Structural & Molecular Biology. 15: 581-90. PMID 18500351 DOI: 10.1038/Nsmb.1438 |
0.607 |
|
| 2008 |
Okamura K, Chung WJ, Ruby JG, Guo H, Bartel DP, Lai EC. The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs. Nature. 453: 803-6. PMID 18463630 DOI: 10.1038/Nature07015 |
0.625 |
|
| 2008 |
Okamura K, Phillips MD, Tyler DM, Duan H, Chou YT, Lai EC. The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution. Nature Structural & Molecular Biology. 15: 354-63. PMID 18376413 DOI: 10.1038/Nsmb.1409 |
0.678 |
|
| 2008 |
Cayirlioglu P, Kadow IG, Zhan X, Okamura K, Suh GS, Gunning D, Lai EC, Zipursky SL. Hybrid neurons in a microRNA mutant are putative evolutionary intermediates in insect CO2 sensory systems. Science (New York, N.Y.). 319: 1256-60. PMID 18309086 DOI: 10.1126/Science.1149483 |
0.444 |
|
| 2008 |
Tyler DM, Okamura K, Chung WJ, Hagen JW, Berezikov E, Hannon GJ, Lai EC. Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci. Genes & Development. 22: 26-36. PMID 18172163 DOI: 10.1101/Gad.1615208 |
0.658 |
|
| 2007 |
Silver SJ, Hagen JW, Okamura K, Perrimon N, Lai EC. Functional screening identifies miR-315 as a potent activator of Wingless signaling. Proceedings of the National Academy of Sciences of the United States of America. 104: 18151-6. PMID 17989227 DOI: 10.1073/Pnas.0706673104 |
0.624 |
|
| 2007 |
Okamura K, Hagen JW, Duan H, Tyler DM, Lai EC. The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Cell. 130: 89-100. PMID 17599402 DOI: 10.1016/J.Cell.2007.06.028 |
0.72 |
|
| 2004 |
Okamura K, Ishizuka A, Siomi H, Siomi MC. Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways. Genes & Development. 18: 1655-66. PMID 15231716 DOI: 10.1101/gad.1210204 |
0.348 |
|
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