David Larson - Publications

Affiliations: 
1998-2004 Washington University School of Medicine, St. Louis, MO, United States 

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 McKenna NP, Bews KA, Shariq OA, Habermann EB, Behm KT, Kelley SR, Larson DW. Is Same-Day and Next-Day Discharge After Laparoscopic Colectomy Reasonable in Select Patients? Diseases of the Colon and Rectum. 63: 1427-1435. PMID 32969886 DOI: 10.1097/DCR.0000000000001729  0.36
2020 Dang HX, Krasnick BA, White BS, Grossman JG, Strand MS, Zhang J, Cabanski CR, Miller CA, Fulton RS, Goedegebuure SP, Fronick CC, Griffith M, Larson DE, Goetz BD, Walker JR, et al. The clonal evolution of metastatic colorectal cancer. Science Advances. 6: eaay9691. PMID 32577507 DOI: 10.1126/sciadv.aay9691  0.36
2019 Shen F, Larson DW, Naessens JM, Habermann EB, Liu H, Sohn S. Detection of Surgical Site Infection Utilizing Automated Feature Generation in Clinical Notes. Journal of Healthcare Informatics Research. 3: 267-282. PMID 31728432 DOI: 10.1007/s41666-018-0042-9  0.36
2019 Locke AE, Steinberg KM, Chiang CWK, Service SK, Havulinna AS, Stell L, Pirinen M, Abel HJ, Chiang CC, Fulton RS, Jackson AU, Kang CJ, Kanchi KL, Koboldt DC, Larson DE, et al. Author Correction: Exome sequencing of Finnish isolates enhances rare-variant association power. Nature. PMID 31686056 DOI: 10.1038/s41586-019-1726-x  0.36
2019 Chen D, Liu S, Kingsbury P, Sohn S, Storlie CB, Habermann EB, Naessens JM, Larson DW, Liu H. Deep learning and alternative learning strategies for retrospective real-world clinical data. Npj Digital Medicine. 2: 43. PMID 31304389 DOI: 10.1038/s41746-019-0122-0  0.36
2018 Griffith OL, Spies NC, Anurag M, Griffith M, Luo J, Tu D, Yeo B, Kunisaki J, Miller CA, Krysiak K, Hundal J, Ainscough BJ, Skidmore ZL, Campbell K, Kumar R, ... ... Larson DE, et al. Author Correction: The prognostic effects of somatic mutations in ER-positive breast cancer. Nature Communications. 9: 4850. PMID 30429476 DOI: 10.1038/s41467-018-07407-3  0.36
2018 Griffith OL, Spies NC, Anurag M, Griffith M, Luo J, Tu D, Yeo B, Kunisaki J, Miller CA, Krysiak K, Hundal J, Ainscough BJ, Skidmore ZL, Campbell K, Kumar R, ... ... Larson DE, et al. The prognostic effects of somatic mutations in ER-positive breast cancer. Nature Communications. 9: 3476. PMID 30181556 DOI: 10.1038/s41467-018-05914-x  0.36
2018 Chen D, Afzal N, Sohn S, Habermann EB, Naessens JM, Larson DW, Liu H. Postoperative bleeding risk prediction for patients undergoing colorectal surgery. Surgery. PMID 30033185 DOI: 10.1016/j.surg.2018.05.043  0.36
2018 Lemini R, Spaulding AC, Naessens JM, Li Z, Merchea A, Crook JE, Larson DW, Colibaseanu DT. ERAS protocol validation in a propensity-matched cohort of patients undergoing colorectal surgery. International Journal of Colorectal Disease. PMID 30032452 DOI: 10.1007/s00384-018-3133-4  0.36
2017 Zhang J, Griffith M, Miller CA, Griffith OL, Spencer DH, Walker JR, Magrini V, McGrath SD, Ly A, Helton NM, Trissal M, Link DC, Dang HX, Larson DE, Kulkarni S, et al. Comprehensive discovery of non-coding RNAs in acute myeloid leukemia cell transcriptomes. Experimental Hematology. PMID 28760689 DOI: 10.1016/j.exphem.2017.07.008  0.36
2017 Spindler BA, Bergquist JR, Thiels CA, Habermann EB, Kelley SR, Larson DW, Mathis KL. Incorporation of CEA Improves Risk Stratification in Stage II Colon Cancer. Journal of Gastrointestinal Surgery : Official Journal of the Society For Surgery of the Alimentary Tract. PMID 28290141 DOI: 10.1007/s11605-017-3391-4  0.36
2017 Griffith M, Spies NC, Krysiak K, McMichael JF, Coffman AC, Danos AM, Ainscough BJ, Ramirez CA, Rieke DT, Kujan L, Barnell EK, Wagner AH, Skidmore ZL, Wollam A, Liu CJ, ... ... Larson DE, et al. CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Nature Genetics. 49: 170-174. PMID 28138153 DOI: 10.1038/ng.3774  0.36
2016 Griffith OL, Chan SR, Griffith M, Krysiak K, Skidmore ZL, Hundal J, Allen JA, Arthur CD, Runci D, Bugatti M, Miceli AP, Schmidt H, Trani L, Kanchi KL, Miller CA, ... Larson DE, et al. Truncating Prolactin Receptor Mutations Promote Tumor Growth in Murine Estrogen Receptor-Alpha Mammary Carcinomas. Cell Reports. 17: 249-60. PMID 27681435 DOI: 10.1016/j.celrep.2016.08.076  0.88
2016 Miller CA, Gindin Y, Lu C, Griffith OL, Griffith M, Shen D, Hoog J, Li T, Larson DE, Watson M, Davies SR, Hunt K, Suman VJ, Snider J, Walsh T, et al. Aromatase inhibition remodels the clonal architecture of estrogen-receptor-positive breast cancers. Nature Communications. 7: 12498. PMID 27502118 DOI: 10.1038/ncomms12498  0.88
2016 Koboldt DC, Kanchi KL, Gui B, Larson DE, Fulton R, Isaacs WB, Kraja A, Borecki IB, Jia L, Wilson RK, Mardis ER, Kibel AS. Rare Variation in TET2 Is Associated with Clinically Relevant Prostate Carcinoma in African-Americans. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 27486019 DOI: 10.1158/1055-9965.EPI-16-0373  0.36
2016 Griffith M, Griffith OL, Krysiak K, Skidmore ZL, Christopher MJ, Klco JM, Ramu A, Lamprecht TL, Wagner AH, Campbell KM, Lesurf R, Hundal J, Zhang J, Spies NC, Ainscough BJ, ... Larson DE, et al. Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B lymphoblastic leukemia. Experimental Hematology. PMID 27181063 DOI: 10.1016/j.exphem.2016.04.011  0.88
2015 Lu C, Xie M, Wendl MC, Wang J, McLellan MD, Leiserson MD, Huang KL, Wyczalkowski MA, Jayasinghe R, Banerjee T, Ning J, Tripathi P, Zhang Q, Niu B, Ye K, ... ... Larson DE, et al. Patterns and functional implications of rare germline variants across 12 cancer types. Nature Communications. 6: 10086. PMID 26689913 DOI: 10.1038/ncomms10086  0.88
2015 Griffith M, Miller CA, Griffith OL, Krysiak K, Skidmore ZL, Ramu A, Walker JR, Dang HX, Trani L, Larson DE, Demeter RT, Wendl MC, McMichael JF, Austin RE, Magrini V, et al. Optimizing cancer genome sequencing and analysis. Cell Systems. 1: 210-223. PMID 26645048 DOI: 10.1016/j.cels.2015.08.015  0.36
2015 Klco JM, Miller CA, Griffith M, Petti A, Spencer DH, Ketkar-Kulkarni S, Wartman LD, Christopher M, Lamprecht TL, Helton NM, Duncavage EJ, Payton JE, Baty J, Heath SE, Griffith OL, ... ... Larson DE, et al. Association Between Mutation Clearance After Induction Therapy and Outcomes in Acute Myeloid Leukemia. Jama. 314: 811-22. PMID 26305651 DOI: 10.1001/jama.2015.9643  0.88
2015 Griffith M, Griffith OL, Smith SM, Ramu A, Callaway MB, Brummett AM, Kiwala MJ, Coffman AC, Regier AA, Oberkfell BJ, Sanderson GE, Mooney TP, Nutter NG, Belter EA, Du F, ... ... Larson DE, et al. Genome Modeling System: A Knowledge Management Platform for Genomics. Plos Computational Biology. 11: e1004274. PMID 26158448 DOI: 10.1371/journal.pcbi.1004274  0.88
2015 Diogo D, Bastarache L, Liao KP, Graham RR, Fulton RS, Greenberg JD, Eyre S, Bowes J, Cui J, Lee A, Pappas DA, Kremer JM, Barton A, Coenen MJ, Franke B, ... ... Larson DE, et al. TYK2 protein-coding variants protect against rheumatoid arthritis and autoimmunity, with no evidence of major pleiotropic effects on non-autoimmune complex traits. Plos One. 10: e0122271. PMID 25849893 DOI: 10.1371/journal.pone.0122271  0.88
2015 Leslie EJ, Taub MA, Liu H, Steinberg KM, Koboldt DC, Zhang Q, Carlson JC, Hetmanski JB, Wang H, Larson DE, Fulton RS, Kousa YA, Fakhouri WD, Naji A, Ruczinski I, et al. Identification of functional variants for cleft lip with or without cleft palate in or near PAX7, FGFR2, and NOG by targeted sequencing of GWAS loci. American Journal of Human Genetics. 96: 397-411. PMID 25704602 DOI: 10.1016/j.ajhg.2015.01.004  0.88
2015 Griffith M, Miller CA, Griffith OL, Krysiak K, Skidmore ZL, Ramu A, Walker JR, Dang HX, Trani L, Larson DE, Demeter RT, Wendl MC, McMichael JF, Austin RE, Magrini V, et al. Optimizing Cancer Genome Sequencing and Analysis Cell Systems. 1: 210-223. DOI: 10.1016/j.cels.2015.08.015  0.88
2014 Koboldt DC, Larson DE, Sullivan LS, Bowne SJ, Steinberg KM, Churchill JD, Buhr AC, Nutter N, Pierce EA, Blanton SH, Weinstock GM, Wilson RK, Daiger SP. Exome-based mapping and variant prioritization for inherited Mendelian disorders. American Journal of Human Genetics. 94: 373-84. PMID 24560519 DOI: 10.1016/j.ajhg.2014.01.016  0.88
2014 Service SK, Teslovich TM, Fuchsberger C, Ramensky V, Yajnik P, Koboldt DC, Larson DE, Zhang Q, Lin L, Welch R, Ding L, McLellan MD, O'Laughlin M, Fronick C, Fulton LL, et al. Re-sequencing expands our understanding of the phenotypic impact of variants at GWAS loci. Plos Genetics. 10: e1004147. PMID 24497850 DOI: 10.1371/journal.pgen.1004147  0.88
2014 Kanchi KL, Johnson KJ, Lu C, McLellan MD, Leiserson MD, Wendl MC, Zhang Q, Koboldt DC, Xie M, Kandoth C, McMichael JF, Wyczalkowski MA, Larson DE, Schmidt HK, Miller CA, et al. Integrated analysis of germline and somatic variants in ovarian cancer. Nature Communications. 5: 3156. PMID 24448499 DOI: 10.1038/ncomms4156  0.88
2013 Koboldt DC, Larson DE, Wilson RK. Using VarScan 2 for Germline Variant Calling and Somatic Mutation Detection. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 44: 15.4.1-15.4.17. PMID 25553206 DOI: 10.1002/0471250953.bi1504s44  0.36
2013 Griffith M, Griffith OL, Coffman AC, Weible JV, McMichael JF, Spies NC, Koval J, Das I, Callaway MB, Eldred JM, Miller CA, Subramanian J, Govindan R, Kumar RD, Bose R, ... ... Larson DE, et al. DGIdb: mining the druggable genome. Nature Methods. 10: 1209-10. PMID 24122041 DOI: 10.1038/nmeth.2689  0.88
2013 Koboldt DC, Steinberg KM, Larson DE, Wilson RK, Mardis ER. The next-generation sequencing revolution and its impact on genomics. Cell. 155: 27-38. PMID 24074859 DOI: 10.1016/j.cell.2013.09.006  0.88
2013 Zhan X, Larson DE, Wang C, Koboldt DC, Sergeev YV, Fulton RS, Fulton LL, Fronick CC, Branham KE, Bragg-Gresham J, Jun G, Hu Y, Kang HM, Liu D, Othman M, et al. Identification of a rare coding variant in complement 3 associated with age-related macular degeneration. Nature Genetics. 45: 1375-9. PMID 24036949 DOI: 10.1038/ng.2758  0.88
2013 Ley TJ, Miller C, Ding L, Raphael BJ, Mungall AJ, Robertson G, Hoadley K, Triche TJ, Laird PW, Baty JD, Fulton LL, Fulton R, Heath SE, Kalicki-Veizer J, Kandoth C, ... ... Larson DE, et al. Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia New England Journal of Medicine. 368: 2059-2074. PMID 23634996 DOI: 10.1056/NadEJMoa1301689  0.88
2012 Welch JS, Ley TJ, Link DC, Miller CA, Larson DE, Koboldt DC, Wartman LD, Lamprecht TL, Liu F, Xia J, Kandoth C, Fulton RS, McLellan MD, Dooling DJ, Wallis JW, et al. The origin and evolution of mutations in acute myeloid leukemia. Cell. 150: 264-78. PMID 22817890 DOI: 10.1016/j.cell.2012.06.023  0.88
2012 Young MA, Larson DE, Sun CW, George DR, Ding L, Miller CA, Lin L, Pawlik KM, Chen K, Fan X, Schmidt H, Kalicki-Veizer J, Cook LL, Swift GW, Demeter RT, et al. Background mutations in parental cells account for most of the genetic heterogeneity of induced pluripotent stem cells. Cell Stem Cell. 10: 570-82. PMID 22542160 DOI: 10.1016/j.stem.2012.03.002  0.88
2012 Walter MJ, Shen D, Ding L, Shao J, Koboldt DC, Chen K, Larson DE, McLellan MD, Dooling D, Abbott R, Fulton R, Magrini V, Schmidt H, Kalicki-Veizer J, O'Laughlin M, et al. Clonal architecture of secondary acute myeloid leukemia. The New England Journal of Medicine. 366: 1090-8. PMID 22417201 DOI: 10.1056/NEJMoa1106968  0.88
2012 Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, Miller CA, Mardis ER, Ding L, Wilson RK. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Research. 22: 568-76. PMID 22300766 DOI: 10.1101/gr.129684.111  0.88
2012 Ding L, Ley TJ, Larson DE, Miller CA, Koboldt DC, Welch JS, Ritchey JK, Young MA, Lamprecht T, McLellan MD, McMichael JF, Wallis JW, Lu C, Shen D, Harris CC, et al. Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing. Nature. 481: 506-10. PMID 22237025 DOI: 10.1038/nature10738  0.88
2012 Koboldt DC, Larson DE, Chen K, Ding L, Wilson RK. Massively parallel sequencing approaches for characterization of structural variation. Methods in Molecular Biology (Clifton, N.J.). 838: 369-84. PMID 22228022 DOI: 10.1007/978-1-61779-507-7_18  0.36
2012 Graubert TA, Shen D, Ding L, Okeyo-Owuor T, Lunn CL, Shao J, Krysiak K, Harris CC, Koboldt DC, Larson DE, McLellan MD, Dooling DJ, Abbott RM, Fulton RS, Schmidt H, et al. Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes. Nature Genetics. 44: 53-7. PMID 22158538 DOI: 10.1038/ng.1031  0.88
2012 Larson DE, Harris CC, Chen K, Koboldt DC, Abbott TE, Dooling DJ, Ley TJ, Mardis ER, Wilson RK, Ding L. SomaticSniper: identification of somatic point mutations in whole genome sequencing data. Bioinformatics (Oxford, England). 28: 311-7. PMID 22155872 DOI: 10.1093/bioinformatics/btr665  0.88
2011 Welch JS, Westervelt P, Ding L, Larson DE, Klco JM, Kulkarni S, Wallis J, Chen K, Payton JE, Fulton RS, Veizer J, Schmidt H, Vickery TL, Heath S, Watson MA, et al. Use of whole-genome sequencing to diagnose a cryptic fusion oncogene. Jama. 305: 1577-84. PMID 21505136 DOI: 10.1001/jama.2011.497  0.88
2011 Wartman LD, Larson DE, Xiang Z, Ding L, Chen K, Lin L, Cahan P, Klco JM, Welch JS, Li C, Payton JE, Uy GL, Varghese N, Ries RE, Hoock M, et al. Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression. The Journal of Clinical Investigation. 121: 1445-55. PMID 21436584 DOI: 10.1172/JCI45284  0.88
2010 Ley TJ, Ding L, Walter MJ, McLellan MD, Lamprecht T, Larson DE, Kandoth C, Payton JE, Baty J, Welch J, Harris CC, Lichti CF, Townsend RR, Fulton RS, Dooling DJ, et al. DNMT3A mutations in acute myeloid leukemia. The New England Journal of Medicine. 363: 2424-33. PMID 21067377 DOI: 10.1056/NEJMoa1005143  0.88
2010 Larson DE, Johnson RI, Swat M, Cordero JB, Glazier JA, Cagan RL. Computer simulation of cellular patterning within the Drosophila pupal eye. Plos Computational Biology. 6: e1000841. PMID 20617161 DOI: 10.1371/journal.pcbi.1000841  0.88
2010 Ding L, Ellis MJ, Li S, Larson DE, Chen K, Wallis JW, Harris CC, McLellan MD, Fulton RS, Fulton LL, Abbott RM, Hoog J, Dooling DJ, Koboldt DC, Schmidt H, et al. Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature. 464: 999-1005. PMID 20393555 DOI: 10.1038/nature08989  0.88
2010 Zhang Q, Ding L, Larson DE, Koboldt DC, McLellan MD, Chen K, Shi X, Kraja A, Mardis ER, Wilson RK, Borecki IB, Province MA. CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data. Bioinformatics (Oxford, England). 26: 464-9. PMID 20031968 DOI: 10.1093/bioinformatics/btp708  0.88
2009 Chen K, Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, McGrath SD, Wendl MC, Zhang Q, Locke DP, Shi X, Fulton RS, Ley TJ, Wilson RK, Ding L, et al. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nature Methods. 6: 677-81. PMID 19668202 DOI: 10.1038/nmeth.1363  0.88
2009 Mardis ER, Ding L, Dooling DJ, Larson DE, McLellan MD, Chen K, Koboldt DC, Fulton RS, Delehaunty KD, McGrath SD, Fulton LA, Locke DP, Magrini VJ, Abbott RM, Vickery TL, et al. Recurring mutations found by sequencing an acute myeloid leukemia genome. The New England Journal of Medicine. 361: 1058-66. PMID 19657110 DOI: 10.1056/NEJMoa0903840  0.88
2009 Koboldt DC, Chen K, Wylie T, Larson DE, McLellan MD, Mardis ER, Weinstock GM, Wilson RK, Ding L. VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics (Oxford, England). 25: 2283-5. PMID 19542151 DOI: 10.1093/bioinformatics/btp373  0.88
2008 Ley TJ, Mardis ER, Ding L, Fulton B, McLellan MD, Chen K, Dooling D, Dunford-Shore BH, McGrath S, Hickenbotham M, Cook L, Abbott R, Larson DE, Koboldt DC, Pohl C, et al. DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome. Nature. 456: 66-72. PMID 18987736 DOI: 10.1038/nature07485  0.88
2008 Ding L, Getz G, Wheeler DA, Mardis ER, McLellan MD, Cibulskis K, Sougnez C, Greulich H, Muzny DM, Morgan MB, Fulton L, Fulton RS, Zhang Q, Wendl MC, Lawrence MS, ... Larson DE, et al. Somatic mutations affect key pathways in lung adenocarcinoma. Nature. 455: 1069-75. PMID 18948947 DOI: 10.1038/nature07423  0.88
2008 McLendon R, Friedman A, Bigner D, Van Meir EG, Brat DJ, Mastrogianakis GM, Olson JJ, Mikkelsen T, Lehman N, Aldape K, Yung WKA, Bogler O, Weinstein JN, VandenBerg S, Berger M, ... ... Larson DE, et al. Comprehensive genomic characterization defines human glioblastoma genes and core pathways Nature. 455: 1061-1068. PMID 18772890 DOI: 10.1038/nature07385  0.88
2008 Larson DE, Liberman Z, Cagan RL. Cellular behavior in the developing Drosophila pupal retina. Mechanisms of Development. 125: 223-32. PMID 18166433 DOI: 10.1016/j.mod.2007.11.007  0.88
2007 Cordero JB, Larson DE, Craig CR, Hays R, Cagan R. Dynamic decapentaplegic signaling regulates patterning and adhesion in the Drosophila pupal retina. Development (Cambridge, England). 134: 1861-71. PMID 17428827 DOI: 10.1242/dev.002972  0.88
2006 Vidal M, Larson DE, Cagan RL. Csk-deficient boundary cells are eliminated from normal Drosophila epithelia by exclusion, migration, and apoptosis. Developmental Cell. 10: 33-44. PMID 16399076 DOI: 10.1016/j.devcel.2005.11.007  0.88
2006 Lawler ML, Larson DE, Hinz AJ, Klein D, Brun YV. Dissection of functional domains of the polar localization factor PodJ in Caulobacter crescentus. Molecular Microbiology. 59: 301-16. PMID 16359336 DOI: 10.1111/j.1365-2958.2005.04935.x  0.88
2003 Hinz AJ, Larson DE, Smith CS, Brun YV. The Caulobacter crescentus polar organelle development protein PodJ is differentially localized and is required for polar targeting of the PleC development regulator. Molecular Microbiology. 47: 929-41. PMID 12581350 DOI: 10.1046/j.1365-2958.2003.03349.x  0.88
2003 Smith CS, Hinz A, Bodenmiller D, Larson DE, Brun YV. Identification of genes required for synthesis of the adhesive holdfast in Caulobacter crescentus. Journal of Bacteriology. 185: 1432-42. PMID 12562815 DOI: 10.1128/JB.185.4.1432-1442.2003  0.88
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