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Dieter Söll - Publications

Affiliations: 
Molecular Biophysics and Biochemistry Yale University, New Haven, CT 
Area:
aminoacyl-tRNA
Website:
http://medicine.yale.edu/mbb/faculty/dieter_soll-2.profile
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452 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Krahn N, Zhang J, Melnikov SV, Tharp JM, Villa A, Patel A, Howard RJ, Gabir H, Patel TR, Stetefeld J, Puglisi J, Söll D. tRNA shape is an identity element for an archaeal pyrrolysyl-tRNA synthetase from the human gut. Nucleic Acids Research. PMID 38100361 DOI: 10.1093/nar/gkad1188  0.795
2023 Jiang HK, Weng JH, Wang YH, Tsou JC, Chen PJ, Ko AA, Söll D, Tsai MD, Wang YS. Rational design of the genetic code expansion toolkit for encoding of D-amino acids. Frontiers in Genetics. 14: 1277489. PMID 37904728 DOI: 10.3389/fgene.2023.1277489  0.833
2023 Hoffman KS, Chung CZ, Mukai T, Krahn N, Jang HK, Balasuriya N, O'Donoghue P, Söll D. Recoding UAG to selenocysteine in Saccharomyces cerevisiae. Rna (New York, N.Y.). PMID 37279998 DOI: 10.1261/rna.079658.123  0.324
2023 Chung CZ, Söll D, Krahn N. Creating Selenocysteine-Specific Reporters Using Inteins. Methods in Molecular Biology (Clifton, N.J.). 2676: 69-86. PMID 37277625 DOI: 10.1007/978-1-0716-3251-2_5  0.31
2023 Schuntermann DB, Fischer JT, Bile J, Gaier SA, Shelley BA, Awawdeh A, Jahn M, Hoffman KS, Westhof E, Söll D, Clarke CR, Vargas-Rodriguez O. Mistranslation of the genetic code by a new family of bacterial transfer RNAs. The Journal of Biological Chemistry. 104852. PMID 37224963 DOI: 10.1016/j.jbc.2023.104852  0.809
2023 Jiang HK, Ambrose NL, Chung CZ, Wang YS, Söll D, Tharp JM. Split aminoacyl-tRNA synthetases for proximity-induced stop codon suppression. Proceedings of the National Academy of Sciences of the United States of America. 120: e2219758120. PMID 36787361 DOI: 10.1073/pnas.2219758120  0.783
2023 Morosky P, Comyns C, Nunes LGA, Chung CZ, Hoffmann PR, Söll D, Vargas-Rodriguez O, Krahn N. Dual incorporation of non-canonical amino acids enables production of post-translationally modified selenoproteins. Frontiers in Molecular Biosciences. 10: 1096261. PMID 36762212 DOI: 10.3389/fmolb.2023.1096261  0.775
2022 Guo LT, Amikura K, Jiang HK, Mukai T, Fu X, Wang YS, O'Donoghue P, Söll D, Tharp JM. Ancestral Archaea Expanded the Genetic Code with Pyrrolysine. The Journal of Biological Chemistry. 102521. PMID 36152750 DOI: 10.1016/j.jbc.2022.102521  0.837
2022 Krahn N, Söll D, Vargas-Rodriguez O. Diversification of aminoacyl-tRNA synthetase activities genomic duplication. Frontiers in Physiology. 13: 983245. PMID 36060688 DOI: 10.3389/fphys.2022.983245  0.756
2022 Prabhakar A, Krahn N, Zhang J, Vargas-Rodriguez O, Krupkin M, Fu Z, Acosta-Reyes FJ, Ge X, Choi J, Crnković A, Ehrenberg M, Puglisi EV, Söll D, Puglisi J. Uncovering translation roadblocks during the development of a synthetic tRNA. Nucleic Acids Research. PMID 35882385 DOI: 10.1093/nar/gkac576  0.801
2022 Zhang H, Gong X, Zhao Q, Mukai T, Vargas-Rodriguez O, Zhang H, Zhang Y, Wassel P, Amikura K, Maupin-Furlow J, Ren Y, Xu X, Wolf YI, Makarova KS, Koonin EV, et al. The tRNA discriminator base defines the mutual orthogonality of two distinct pyrrolysyl-tRNA synthetase/tRNAPyl pairs in the same organism. Nucleic Acids Research. PMID 35466371 DOI: 10.1093/nar/gkac271  0.801
2022 Fischer JT, Söll D, Tharp JM. Directed Evolution of Pyrrolysyl-tRNA Synthetase Generates a Hyperactive and Highly Selective Variant. Frontiers in Molecular Biosciences. 9: 850613. PMID 35372501 DOI: 10.3389/fmolb.2022.850613  0.771
2022 DeBenedictis EA, Söll D, Esvelt KM. Measuring the tolerance of the genetic code to altered codon size. Elife. 11. PMID 35293861 DOI: 10.7554/eLife.76941  0.318
2022 Chung CZ, Söll D, Krahn N. Using selenocysteine-specific reporters to screen for efficient tRNA variants. Methods in Enzymology. 662: 63-93. PMID 35101219 DOI: 10.1016/bs.mie.2021.10.005  0.303
2021 Mukai T, Amikura K, Fu X, Söll D, Crnković A. Indirect Routes to Aminoacyl-tRNA: The Diversity of Prokaryotic Cysteine Encoding Systems. Frontiers in Genetics. 12: 794509. PMID 35047015 DOI: 10.3389/fgene.2021.794509  0.497
2021 DeBenedictis EA, Carver GD, Chung CZ, Söll D, Badran AH. Multiplex suppression of four quadruplet codons via tRNA directed evolution. Nature Communications. 12: 5706. PMID 34588441 DOI: 10.1038/s41467-021-25948-y  0.371
2021 Vargas-Rodriguez O, Badran AH, Hoffman KS, Chen M, Crnković A, Ding Y, Krieger JR, Westhof E, Söll D, Melnikov S. Bacterial translation machinery for deliberate mistranslation of the genetic code. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34413202 DOI: 10.1073/pnas.2110797118  0.786
2021 Tharp JM, Walker JA, Söll D, Schepartz A. Initiating protein synthesis with noncanonical monomers in vitro and in vivo. Methods in Enzymology. 656: 495-519. PMID 34325796 DOI: 10.1016/bs.mie.2021.05.002  0.786
2021 Tharp JM, Vargas-Rodriguez O, Schepartz A, Söll D. Genetic Encoding of Three Distinct Noncanonical Amino Acids Using Reprogrammed Initiator and Nonsense Codons. Acs Chemical Biology. PMID 33723984 DOI: 10.1021/acschembio.1c00120  0.855
2021 Chung CZ, Miller C, Söll D, Krahn N. Introducing Selenocysteine into Recombinant Proteins in Escherichia coli. Current Protocols. 1: e54. PMID 33566458 DOI: 10.1002/cpz1.54  0.382
2020 Krahn N, Tharp JM, Crnković A, Söll D. Engineering aminoacyl-tRNA synthetases for use in synthetic biology. The Enzymes. 48: 351-395. PMID 33837709 DOI: 10.1016/bs.enz.2020.06.004  0.803
2020 Chung CZ, Amikura K, Söll D. Using Genetic Code Expansion for Protein Biochemical Studies. Frontiers in Bioengineering and Biotechnology. 8: 598577. PMID 33195171 DOI: 10.3389/fbioe.2020.598577  0.304
2020 Krahn N, Fischer JT, Söll D. Naturally Occurring tRNAs With Non-canonical Structures. Frontiers in Microbiology. 11: 596914. PMID 33193279 DOI: 10.3389/fmicb.2020.596914  0.301
2020 Tharp JM, Krahn N, Varshney U, Söll D. Hijacking Translation Initiation for Synthetic Biology. Chembiochem : a European Journal of Chemical Biology. PMID 32023356 DOI: 10.1002/Cbic.202000017  0.769
2020 Tharp JM, Krahn N, Varshney U, Söll D. Front Cover: Hijacking Translation Initiation for Synthetic Biology (ChemBioChem 10/2020) Chembiochem. 21: 1383-1383. DOI: 10.1002/Cbic.202000239  0.726
2019 Tharp JM, Ad O, Amikura K, Ward FR, Garcia EM, Cate JHD, Schepartz A, Söll D. Initiation of Protein Synthesis with Non-canonical Amino Acids In Vivo. Angewandte Chemie (International Ed. in English). PMID 31828898 DOI: 10.1002/Anie.201914671  0.791
2019 Melnikov S, Kwok HS, Manakongtreecheep K, van den Elzen A, Thoreen CC, Söll D. Archaeal ribosomal proteins possess nuclear localization signal-type motifs: implications for the origin of the cell nucleus. Molecular Biology and Evolution. PMID 31501901 DOI: 10.1093/Molbev/Msz207  0.358
2019 Ad O, Hoffman KS, Cairns AG, Featherston AL, Miller SJ, Söll D, Schepartz A. Translation of Diverse Aramid- and 1,3-Dicarbonyl-peptides by Wild Type Ribosomes . Acs Central Science. 5: 1289-1294. PMID 31403077 DOI: 10.1021/Acscentsci.9B00460  0.328
2019 Hoffman KS, Vargas-Rodriguez O, Bak DW, Mukai T, Woodward LK, Weerapana E, Söll D, Reynolds NM. A cysteinyl-tRNA synthetase variant confers resistance against selenite toxicity and decreases selenocysteine misincorporation. The Journal of Biological Chemistry. PMID 31296657 DOI: 10.1074/Jbc.Ra119.008219  0.78
2019 Crnković A, Vargas-Rodriguez O, Söll D. Plasticity and Constraints of tRNA Aminoacylation Define Directed Evolution of Aminoacyl-tRNA Synthetases. International Journal of Molecular Sciences. 20. PMID 31075874 DOI: 10.3390/Ijms20092294  0.791
2019 Melnikov SV, Söll D. Aminoacyl-tRNA Synthetases and tRNAs for an Expanded Genetic Code: What Makes them Orthogonal? International Journal of Molecular Sciences. 20. PMID 31010123 DOI: 10.3390/Ijms20081929  0.488
2019 Kwok HS, Vargas-Rodriguez O, Melnikov SV, Soll D. Engineered aminoacyl-tRNA synthetases with improved selectivity towards non-canonical amino acids. Acs Chemical Biology. PMID 30933556 DOI: 10.1021/Acschembio.9B00088  0.793
2018 Melnikov SV, Manakongtreecheep K, Rivera KD, Makarenko A, Pappin DJ, Söll D. Muller's Ratchet and Ribosome Degeneration in the Obligate Intracellular Parasites . International Journal of Molecular Sciences. 19. PMID 30572624 DOI: 10.3390/Ijms19124125  0.405
2018 Melnikov SV, Khabibullina NF, Mairhofer E, Vargas-Rodriguez O, Reynolds NM, Micura R, Söll D, Polikanov YS. Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site. Nucleic Acids Research. PMID 30520988 DOI: 10.1093/Nar/Gky1211  0.78
2018 Melnikov SV, van den Elzen A, Stevens DL, Thoreen CC, Söll D. Loss of protein synthesis quality control in host-restricted organisms. Proceedings of the National Academy of Sciences of the United States of America. PMID 30455292 DOI: 10.1073/Pnas.1815992115  0.42
2018 Hoffman KS, Crnković A, Söll D. Versatility of Synthetic tRNAs in Genetic Code Expansion. Genes. 9. PMID 30405060 DOI: 10.3390/Genes9110537  0.531
2018 Fu X, Crnković A, Sevostyanova A, Söll D. Designing seryl-tRNA synthetase for improved serylation of selenocysteine tRNAs. Febs Letters. PMID 30317559 DOI: 10.1002/1873-3468.13271  0.509
2018 Umehara T, Kosono S, Söll D, Tamura K. Lysine Acetylation Regulates Alanyl-tRNA Synthetase Activity in . Genes. 9. PMID 30274179 DOI: 10.3390/Genes9100473  0.414
2018 O'Donoghue P, Ling J, Söll D. Transfer RNA function and evolution. Rna Biology. 15: 423-426. PMID 30099966 DOI: 10.1080/15476286.2018.1478942  0.528
2018 Vargas-Rodriguez O, Sevostyanova A, Söll D, Crnković A. Upgrading aminoacyl-tRNA synthetases for genetic code expansion. Current Opinion in Chemical Biology. 46: 115-122. PMID 30059834 DOI: 10.1016/J.Cbpa.2018.07.014  0.791
2018 Melnikov SV, Rivera KD, Ostapenko D, Makarenko A, Sanscrainte ND, Becnel JJ, Solomon MJ, Texier C, Pappin DJ, Söll D. Error-prone protein synthesis in parasites with the smallest eukaryotic genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 29915081 DOI: 10.1073/Pnas.1803208115  0.453
2018 Vargas-Rodriguez O, Englert M, Merkuryev A, Mukai T, Söll D. Recoding of the selenocysteine UGA codon by cysteine in the presence of a non-canonical tRNA and elongation factor SelB. Rna Biology. PMID 29879865 DOI: 10.1080/15476286.2018.1474074  0.82
2018 Mukai T, Sevostiyanova A, Suzuki T, Fu X, Söll D. A facile method for producing selenocysteine-containing proteins. Angewandte Chemie (International Ed. in English). PMID 29631320 DOI: 10.1002/Anie.201713215  0.483
2018 Melnikov S, Manakongtreecheep K, Söll D. Revising the structural diversity of ribosomal proteins across the three domains of life. Molecular Biology and Evolution. PMID 29529322 DOI: 10.1093/Molbev/Msy021  0.395
2018 Fu X, Söll D, Sevostyanova A. Challenges of site-specific selenocysteine incorporation into proteins by Escherichia coli. Rna Biology. 1-24. PMID 29447106 DOI: 10.1080/15476286.2018.1440876  0.491
2018 Crnković A, Vargas-Rodriguez O, Merkuryev A, Söll D. Effects of Heterologous tRNA Modifications on the Production of Proteins Containing Noncanonical Amino Acids. Bioengineering (Basel, Switzerland). 5. PMID 29393901 DOI: 10.3390/Bioengineering5010011  0.781
2018 Ho JM, Bakkalbasi E, Söll D, Miller CA. Drugging tRNA aminoacylation. Rna Biology. 0. PMID 29345185 DOI: 10.1080/15476286.2018.1429879  0.466
2018 Bryson DI, Fan C, Guo LT, Miller C, Söll D, Liu DR. Errata: Continuous directed evolution of aminoacyl-tRNA synthetases. Nature Chemical Biology. 14: 186. PMID 29337967 DOI: 10.1038/Nchembio0218-186  0.342
2018 Kunjapur AM, Stork DA, Kuru E, Vargas-Rodriguez O, Landon M, Söll D, Church GM. Engineering posttranslational proofreading to discriminate nonstandard amino acids. Proceedings of the National Academy of Sciences of the United States of America. PMID 29301968 DOI: 10.1073/Pnas.1715137115  0.791
2017 Suzuki T, Miller C, Guo LT, Ho JML, Bryson DI, Wang YS, Liu DR, Söll D. Crystal structures reveal an elusive functional domain of pyrrolysyl-tRNA synthetase. Nature Chemical Biology. PMID 29035363 DOI: 10.1038/Nchembio.2497  0.838
2017 Bryson DI, Fan C, Guo LT, Miller C, Söll D, Liu DR. Continuous directed evolution of aminoacyl-tRNA synthetases. Nature Chemical Biology. PMID 29035361 DOI: 10.1038/Nchembio.2474  0.496
2017 Mukai T, Lajoie MJ, Englert M, Söll D. Rewriting the Genetic Code. Annual Review of Microbiology. PMID 28697669 DOI: 10.1146/Annurev-Micro-090816-093247  0.36
2017 Mukai T, Crnković A, Umehara T, Ivanova NN, Kyrpides NC, Söll D. RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea. Mbio. 8. PMID 28487430 DOI: 10.1128/Mbio.00561-17  0.462
2017 Reynolds NM, Vargas-Rodriguez O, Söll D, Crnković A. The central role of tRNA in genetic code expansion. Biochimica Et Biophysica Acta. PMID 28323071 DOI: 10.1016/J.Bbagen.2017.03.012  0.776
2017 Englert M, Vargas-Rodriguez O, Reynolds NM, Wang YS, Söll D, Umehara T. A genomically modified Escherichia coli strain carrying an orthogonal E. coli histidyl-tRNA synthetase•tRNA(His) pair. Biochimica Et Biophysica Acta. PMID 28288813 DOI: 10.1016/J.Bbagen.2017.03.003  0.83
2017 Mukai T, Reynolds NM, Crnković A, Söll D. Bioinformatic Analysis Reveals Archaeal tRNA(Tyr) and tRNA(Trp) Identities in Bacteria. Life (Basel, Switzerland). 7. PMID 28230768 DOI: 10.3390/Life7010008  0.538
2016 Crnković A, Suzuki T, Söll D, Reynolds NM. Pyrrolysyl-tRNA synthetase, an aminoacyl-tRNA synthetase for genetic code expansion. Croatica Chemica Acta. Arhiv Za Kemiju. 89: 163-174. PMID 28239189 DOI: 10.5562/Cca2825  0.541
2016 Mukai T, Vargas-Rodriguez O, Englert M, Tripp HJ, Ivanova NN, Rubin EM, Kyrpides NC, Söll D. Transfer RNAs with novel cloverleaf structures. Nucleic Acids Research. PMID 28076288 DOI: 10.1093/Nar/Gkw898  0.812
2016 Liu Y, Vinyard DJ, Reesbeck ME, Suzuki T, Manakongtreecheep K, Holland PL, Brudvig GW, Söll D. A [3Fe-4S] cluster is required for tRNA thiolation in archaea and eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. PMID 27791189 DOI: 10.1073/Pnas.1615732113  0.412
2016 Dobosz-Bartoszek M, Pinkerton MH, Otwinowski Z, Chakravarthy S, Söll D, Copeland PR, Simonović M. Crystal structures of the human elongation factor eEFSec suggest a non-canonical mechanism for selenocysteine incorporation. Nature Communications. 7: 12941. PMID 27708257 DOI: 10.1038/Ncomms12941  0.402
2016 Yang A, Ha S, Ahn J, Kim R, Kim S, Lee Y, Kim J, Söll D, Lee HY, Park HS. A chemical biology route to site-specific authentic protein modifications. Science (New York, N.Y.). PMID 27708052 DOI: 10.1126/Science.Aah4428  0.337
2016 Napolitano MG, Landon M, Gregg CJ, Lajoie MJ, Govindarajan L, Mosberg JA, Kuznetsov G, Goodman DB, Vargas-Rodriguez O, Isaacs FJ, Söll D, Church GM. Emergent rules for codon choice elucidated by editing rare arginine codons in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 113: E5588-97. PMID 27601680 DOI: 10.1073/Pnas.1605856113  0.802
2016 Fan C, Ip K, Söll D. Expanding the Genetic Code of Escherichia coli with Phosphotyrosine. Febs Letters. PMID 27477338 DOI: 10.1002/1873-3468.12333  0.471
2016 Mukai T, Englert M, Tripp HJ, Miller C, Ivanova NN, Rubin EM, Kyrpides NC, Söll D. [Facile Recoding of Selenocysteine in Nature]. Angewandte Chemie (Weinheim An Der Bergstrasse, Germany). 128: 5423-5427. PMID 27440945 DOI: 10.1002/Ange.201511657  0.378
2016 Xiong H, Reynolds NM, Fan C, Englert M, Hoyer D, Miller SJ, Söll D. [Dual genetic encoding of acetyl-lysine and non-deacetylatablethioacetyl-lysine mediated by flexizyme]. Angewandte Chemie (Weinheim An Der Bergstrasse, Germany). 128: 4151-4154. PMID 27330229 DOI: 10.1002/Ange.201511750  0.315
2016 Melo Czekster C, Robertson WE, Walker AS, Söll D, Schepartz A. In Vivo Biosynthesis of a β-Amino Acid-Containing Protein. Journal of the American Chemical Society. PMID 27086674 DOI: 10.1021/Jacs.6B01023  0.448
2016 Melnikov SV, Söll D, Steitz TA, Polikanov YS. Insights into RNA binding by the anticancer drug cisplatin from the crystal structure of cisplatin-modified ribosome. Nucleic Acids Research. PMID 27079977 DOI: 10.1093/Nar/Gkw246  0.55
2016 Mukai T, Englert M, Tripp HJ, Miller C, Ivanova NN, Rubin EM, Kyrpides NC, Söll D. Facile Recoding of Selenocysteine in Nature. Angewandte Chemie (International Ed. in English). PMID 26991476 DOI: 10.1002/Anie.201511657  0.413
2016 Ho JM, Reynolds NM, Rivera K, Connolly M, Guo LT, Ling J, Pappin DJ, Church GM, Söll D. Efficient Reassignment of a Frequent Serine Codon in Wild-Type Escherichia coli. Acs Synthetic Biology. 5: 163-71. PMID 26544153 DOI: 10.1021/Acssynbio.5B00197  0.634
2015 Englert M, Nakamura A, Wang YS, Eiler D, Söll D, Guo LT. Probing the active site tryptophan of Staphylococcus aureus thioredoxin with an analog. Nucleic Acids Research. PMID 26582921 DOI: 10.1093/Nar/Gkv1255  0.834
2015 Amiram M, Haimovich AD, Fan C, Wang YS, Aerni HR, Ntai I, Moonan DW, Ma NJ, Rovner AJ, Hong SH, Kelleher NL, Goodman AL, Jewett MC, Söll D, Rinehart J, et al. Evolution of translation machinery in recoded bacteria enables multi-site incorporation of nonstandard amino acids. Nature Biotechnology. PMID 26571098 DOI: 10.1038/Nbt.3372  0.835
2015 Ling J, O'Donoghue P, Söll D. Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology. Nature Reviews. Microbiology. 13: 707-21. PMID 26411296 DOI: 10.1038/Nrmicro3568  0.546
2015 Lajoie MJ, Söll D, Church GM. Overcoming challenges in engineering the genetic code. Journal of Molecular Biology. PMID 26348789 DOI: 10.1016/J.Jmb.2015.09.003  0.313
2015 Fan C, Xiong H, Reynolds NM, Söll D. Rationally evolving tRNAPyl for efficient incorporation of noncanonical amino acids. Nucleic Acids Research. PMID 26250114 DOI: 10.1093/Nar/Gkv800  0.563
2015 Quax TE, Claassens NJ, Söll D, van der Oost J. Codon Bias as a Means to Fine-Tune Gene Expression. Molecular Cell. 59: 149-61. PMID 26186290 DOI: 10.1016/J.Molcel.2015.05.035  0.458
2015 Miller C, Bröcker MJ, Prat L, Ip K, Chirathivat N, Feiock A, Veszprémi M, Söll D. A synthetic tRNA for EF-Tu mediated selenocysteine incorporation in vivo and in vitro. Febs Letters. 589: 2194-9. PMID 26160755 DOI: 10.1016/J.Febslet.2015.06.039  0.444
2015 Hoesl MG, Oehm S, Durkin P, Darmon E, Peil L, Aerni HR, Rappsilber J, Rinehart J, Leach D, Söll D, Budisa N. Chemical Evolution of a Bacterial Proteome. Angewandte Chemie (International Ed. in English). 54: 10030-4. PMID 26136259 DOI: 10.1002/Anie.201502868  0.634
2015 Soll D. A tRNA-guided research journey from synthetic chemistry to synthetic biology. Rna (New York, N.Y.). 21: 742-4. PMID 25780217 DOI: 10.1261/Rna.050625.115  0.371
2015 Polikanov YS, Melnikov SV, Söll D, Steitz TA. Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly. Nature Structural & Molecular Biology. 22: 342-4. PMID 25775268 DOI: 10.1038/Nsmb.2992  0.587
2015 Suzuki T, Nakamura A, Kato K, Söll D, Tanaka I, Sheppard K, Yao M. Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 112: 382-7. PMID 25548166 DOI: 10.1073/Pnas.1423314112  0.708
2015 Hoesl MG, Oehm S, Durkin P, Darmon E, Peil L, Aerni H, Rappsilber J, Rinehart J, Leach D, Söll D, Budisa N. Inside Cover: Chemical Evolution of a Bacterial Proteome (Angew. Chem. Int. Ed. 34/2015) Angewandte Chemie International Edition. 54: 9726-9726. DOI: 10.1002/Anie.201506522  0.534
2015 Hoesl MG, Oehm S, Durkin P, Darmon E, Peil L, Aerni H, Rappsilber J, Rinehart J, Leach D, Söll D, Budisa N. Innentitelbild: Chemische Evolution eines bakteriellen Proteoms (Angew. Chem. 34/2015) Angewandte Chemie. 127: 9862-9862. DOI: 10.1002/Ange.201506522  0.535
2015 Hoesl MG, Oehm S, Durkin P, Darmon E, Peil L, Aerni H, Rappsilber J, Rinehart J, Leach D, Söll D, Budisa N. Chemische Evolution eines bakteriellen Proteoms Angewandte Chemie. 127: 10168-10172. DOI: 10.1002/Ange.201502868  0.576
2014 O'Donoghue P, Prat L, Kucklick M, Schäfer JG, Riedel K, Rinehart J, Söll D, Heinemann IU. Reducing the genetic code induces massive rearrangement of the proteome. Proceedings of the National Academy of Sciences of the United States of America. 111: 17206-11. PMID 25404328 DOI: 10.1073/Pnas.1420193111  0.642
2014 Guo LT, Wang YS, Nakamura A, Eiler D, Kavran JM, Wong M, Kiessling LL, Steitz TA, O'Donoghue P, Söll D. Polyspecific pyrrolysyl-tRNA synthetases from directed evolution. Proceedings of the National Academy of Sciences of the United States of America. 111: 16724-9. PMID 25385624 DOI: 10.1073/Pnas.1419737111  0.856
2014 Haruna K, Alkazemi MH, Liu Y, Söll D, Englert M. Engineering the elongation factor Tu for efficient selenoprotein synthesis. Nucleic Acids Research. 42: 9976-83. PMID 25064855 DOI: 10.1093/Nar/Gku691  0.459
2014 Liu Y, Nakamura A, Nakazawa Y, Asano N, Ford KA, Hohn MJ, Tanaka I, Yao M, Söll D. Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea. Proceedings of the National Academy of Sciences of the United States of America. 111: 10520-5. PMID 25002468 DOI: 10.1073/Pnas.1411267111  0.52
2014 Chavarria NE, Hwang S, Cao S, Fu X, Holman M, Elbanna D, Rodriguez S, Arrington D, Englert M, Uthandi S, Söll D, Maupin-Furlow JA. Archaeal Tuc1/Ncs6 homolog required for wobble uridine tRNA thiolation is associated with ubiquitin-proteasome, translation, and RNA processing system homologs. Plos One. 9: e99104. PMID 24906001 DOI: 10.1371/Journal.Pone.0099104  0.466
2014 Fan C, Ho JM, Chirathivat N, Söll D, Wang YS. Exploring the substrate range of wild-type aminoacyl-tRNA synthetases. Chembiochem : a European Journal of Chemical Biology. 15: 1805-9. PMID 24890918 DOI: 10.1002/Cbic.201402083  0.848
2014 Zhang X, Ling J, Barcia G, Jing L, Wu J, Barry BJ, Mochida GH, Hill RS, Weimer JM, Stein Q, Poduri A, Partlow JN, Ville D, Dulac O, Yu TW, et al. Mutations in QARS, encoding glutaminyl-tRNA synthetase, cause progressive microcephaly, cerebral-cerebellar atrophy, and intractable seizures. American Journal of Human Genetics. 94: 547-58. PMID 24656866 DOI: 10.1016/J.Ajhg.2014.03.003  0.574
2014 Liu Y, Long F, Wang L, Söll D, Whitman WB. The putative tRNA 2-thiouridine synthetase Ncs6 is an essential sulfur carrier in Methanococcus maripaludis. Febs Letters. 588: 873-7. PMID 24530533 DOI: 10.1016/J.Febslet.2014.01.065  0.391
2014 Bröcker MJ, Ho JM, Church GM, Söll D, O'Donoghue P. Recoding the genetic code with selenocysteine. Angewandte Chemie (International Ed. in English). 53: 319-23. PMID 24511637 DOI: 10.1002/Anie.201308584  0.523
2014 Itoh Y, Bröcker MJ, Sekine S, Söll D, Yokoyama S. Dimer-dimer interaction of the bacterial selenocysteine synthase SelA promotes functional active-site formation and catalytic specificity. Journal of Molecular Biology. 426: 1723-35. PMID 24456689 DOI: 10.1016/J.Jmb.2014.01.003  0.474
2014 Mandal D, Köhrer C, Su D, Babu IR, Chan CT, Liu Y, Söll D, Blum P, Kuwahara M, Dedon PC, Rajbhandary UL. Identification and codon reading properties of 5-cyanomethyl uridine, a new modified nucleoside found in the anticodon wobble position of mutant haloarchaeal isoleucine tRNAs. Rna (New York, N.Y.). 20: 177-88. PMID 24344322 DOI: 10.1261/Rna.042358.113  0.658
2014 Ling J, Daoud R, Lajoie MJ, Church GM, Söll D, Lang BF. Natural reassignment of CUU and CUA sense codons to alanine in Ashbya mitochondria. Nucleic Acids Research. 42: 499-508. PMID 24049072 DOI: 10.1093/Nar/Gkt842  0.632
2013 Ko JH, Llopis PM, Heinritz J, Jacobs-Wagner C, Söll D. Suppression of amber codons in Caulobacter crescentus by the orthogonal Escherichia coli histidyl-tRNA synthetase/tRNAHis pair. Plos One. 8: e83630. PMID 24386240 DOI: 10.1371/Journal.Pone.0083630  0.446
2013 Nakamura A, Nemoto T, Heinemann IU, Yamashita K, Sonoda T, Komoda K, Tanaka I, Söll D, Yao M. Structural basis of reverse nucleotide polymerization. Proceedings of the National Academy of Sciences of the United States of America. 110: 20970-5. PMID 24324136 DOI: 10.1073/Pnas.1321312111  0.458
2013 Peterson D, Schön A, Söll D. The nucleotide sequences of barley cytoplasmic glutamate transfer RNAs and structural features essential for formation of δ-aminolevulinic acid. Plant Molecular Biology. 11: 293-9. PMID 24272342 DOI: 10.1007/Bf00027386  0.559
2013 O'Donoghue P, Ling J, Wang YS, Söll D. Upgrading protein synthesis for synthetic biology. Nature Chemical Biology. 9: 594-8. PMID 24045798 DOI: 10.1038/Nchembio.1339  0.813
2013 Englert M, Moses S, Hohn M, Ling J, O'Donoghue P, Söll D. Aminoacylation of tRNA 2'- or 3'-hydroxyl by phosphoseryl- and pyrrolysyl-tRNA synthetases. Febs Letters. 587: 3360-4. PMID 24021645 DOI: 10.1016/J.Febslet.2013.08.037  0.627
2013 Krishnakumar R, Prat L, Aerni HR, Ling J, Merryman C, Glass JI, Rinehart J, Söll D. Transfer RNA misidentification scrambles sense codon recoding. Chembiochem : a European Journal of Chemical Biology. 14: 1967-72. PMID 24000185 DOI: 10.1002/Cbic.201300444  0.784
2013 Ko JH, Wang YS, Nakamura A, Guo LT, Söll D, Umehara T. Pyrrolysyl-tRNA synthetase variants reveal ancestral aminoacylation function. Febs Letters. 587: 3243-8. PMID 23994531 DOI: 10.1016/J.Febslet.2013.08.018  0.853
2013 Itoh Y, Bröcker MJ, Sekine S, Hammond G, Suetsugu S, Söll D, Yokoyama S. Decameric SelA•tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation. Science (New York, N.Y.). 340: 75-8. PMID 23559248 DOI: 10.1126/Science.1229521  0.54
2013 Campbell JH, O'Donoghue P, Campbell AG, Schwientek P, Sczyrba A, Woyke T, Söll D, Podar M. UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota. Proceedings of the National Academy of Sciences of the United States of America. 110: 5540-5. PMID 23509275 DOI: 10.1073/Pnas.1303090110  0.449
2013 Aldag C, Bröcker MJ, Hohn MJ, Prat L, Hammond G, Plummer A, Söll D. Rewiring translation for elongation factor Tu-dependent selenocysteine incorporation. Angewandte Chemie (International Ed. in English). 52: 1441-5. PMID 23193031 DOI: 10.1002/Anie.201207567  0.42
2013 Bröcker MJ, Ho JML, Church GM, Söll D, O'Donoghue P. Umkodierung des genetischen Codes mit Selenocystein Angewandte Chemie. 126: 325-330. DOI: 10.1002/Ange.201308584  0.353
2012 Prat L, Heinemann IU, Aerni HR, Rinehart J, O'Donoghue P, Söll D. Carbon source-dependent expansion of the genetic code in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 21070-5. PMID 23185002 DOI: 10.1073/Pnas.1218613110  0.635
2012 Ling J, Cho C, Guo LT, Aerni HR, Rinehart J, Söll D. Protein aggregation caused by aminoglycoside action is prevented by a hydrogen peroxide scavenger. Molecular Cell. 48: 713-22. PMID 23122414 DOI: 10.1016/J.Molcel.2012.10.001  0.676
2012 O'Donoghue P, Prat L, Heinemann IU, Ling J, Odoi K, Liu WR, Söll D. Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion. Febs Letters. 586: 3931-7. PMID 23036644 DOI: 10.1016/J.Febslet.2012.09.033  0.72
2012 Heinemann IU, Rovner AJ, Aerni HR, Rogulina S, Cheng L, Olds W, Fischer JT, Söll D, Isaacs FJ, Rinehart J. Enhanced phosphoserine insertion during Escherichia coli protein synthesis via partial UAG codon reassignment and release factor 1 deletion. Febs Letters. 586: 3716-22. PMID 22982858 DOI: 10.1016/J.Febslet.2012.08.031  0.617
2012 Englert M, Xia S, Okada C, Nakamura A, Tanavde V, Yao M, Eom SH, Konigsberg WH, Söll D, Wang J. Structural and mechanistic insights into guanylylation of RNA-splicing ligase RtcB joining RNA between 3'-terminal phosphate and 5'-OH. Proceedings of the National Academy of Sciences of the United States of America. 109: 15235-40. PMID 22949672 DOI: 10.1073/Pnas.1213795109  0.393
2012 Liu Y, Zhu X, Nakamura A, Orlando R, Söll D, Whitman WB. Biosynthesis of 4-thiouridine in tRNA in the methanogenic archaeon Methanococcus maripaludis. The Journal of Biological Chemistry. 287: 36683-92. PMID 22904325 DOI: 10.1074/Jbc.M112.405688  0.369
2012 Breaker RR, Conklin DS, Gold L, Söll D, Montimurro JS, Agris PF. RNA science and its applications-a look toward the future: Albany, NY USA, November 3-4, 2011. Rna Biology. 9: 1050-3. PMID 22858674 DOI: 10.4161/Rna.21209  0.554
2012 Ling J, Peterson KM, Simonovic I, Söll D, Simonovic M. The mechanism of pre-transfer editing in yeast mitochondrial threonyl-tRNA synthetase. The Journal of Biological Chemistry. 287: 28518-25. PMID 22773845 DOI: 10.1074/Jbc.M112.372920  0.635
2012 Guo LT, Helgadóttir S, Söll D, Ling J. Rational design and directed evolution of a bacterial-type glutaminyl-tRNA synthetase precursor. Nucleic Acids Research. 40: 7967-74. PMID 22661575 DOI: 10.1093/Nar/Gks507  0.687
2012 Saha R, Dasgupta S, Banerjee R, Mitra-Bhattacharyya A, Söll D, Basu G, Roy S. A functional loop spanning distant domains of glutaminyl-tRNA synthetase also stabilizes a molten globule state. Biochemistry. 51: 4429-37. PMID 22563625 DOI: 10.1021/Bi300221T  0.435
2012 Ling J, Peterson KM, Simonović I, Cho C, Söll D, Simonović M. Yeast mitochondrial threonyl-tRNA synthetase recognizes tRNA isoacceptors by distinct mechanisms and promotes CUN codon reassignment. Proceedings of the National Academy of Sciences of the United States of America. 109: 3281-6. PMID 22343532 DOI: 10.1073/Pnas.1200109109  0.697
2012 Su D, Ojo TT, Söll D, Hohn MJ. Selenomodification of tRNA in archaea requires a bipartite rhodanese enzyme. Febs Letters. 586: 717-21. PMID 22293502 DOI: 10.1016/J.Febslet.2012.01.024  0.511
2012 Umehara T, Kim J, Lee S, Guo LT, Söll D, Park HS. N-acetyl lysyl-tRNA synthetases evolved by a CcdB-based selection possess N-acetyl lysine specificity in vitro and in vivo. Febs Letters. 586: 729-33. PMID 22289181 DOI: 10.1016/J.Febslet.2012.01.029  0.489
2012 Liu Y, Dos Santos PC, Zhu X, Orlando R, Dean DR, Söll D, Yuan J. Catalytic mechanism of Sep-tRNA:Cys-tRNA synthase: sulfur transfer is mediated by disulfide and persulfide. The Journal of Biological Chemistry. 287: 5426-33. PMID 22167197 DOI: 10.1074/Jbc.M111.313700  0.508
2012 Helgadóttir S, Sinapah S, Söll D, Ling J. Mutational analysis of Sep-tRNA:Cys-tRNA synthase reveals critical residues for tRNA-dependent cysteine formation. Febs Letters. 586: 60-3. PMID 22166682 DOI: 10.1016/J.Febslet.2011.11.024  0.65
2012 Heinemann IU, Nakamura A, O'Donoghue P, Eiler D, Söll D. tRNAHis-guanylyltransferase establishes tRNAHis identity. Nucleic Acids Research. 40: 333-44. PMID 21890903 DOI: 10.1093/Nar/Gkr696  0.528
2012 Ling J, Söll D. The genetic code: Yesterday, today, and tomorrow Resonance. 17: 1136-1142. DOI: 10.1007/S12045-012-0130-8  0.514
2011 O'Donoghue P, Sheppard K, Nureki O, Söll D. Rational design of an evolutionary precursor of glutaminyl-tRNA synthetase. Proceedings of the National Academy of Sciences of the United States of America. 108: 20485-90. PMID 22158897 DOI: 10.1073/Pnas.1117294108  0.747
2011 Park HS, Hohn MJ, Umehara T, Guo LT, Osborne EM, Benner J, Noren CJ, Rinehart J, Söll D. Expanding the genetic code of Escherichia coli with phosphoserine. Science (New York, N.Y.). 333: 1151-4. PMID 21868676 DOI: 10.1126/Science.1207203  0.652
2011 Hohn MJ, Palioura S, Su D, Yuan J, Söll D. Genetic analysis of selenocysteine biosynthesis in the archaeon Methanococcus maripaludis. Molecular Microbiology. 81: 249-58. PMID 21564332 DOI: 10.1111/J.1365-2958.2011.07690.X  0.749
2011 Hebecker S, Arendt W, Heinemann IU, Tiefenau JH, Nimtz M, Rohde M, Söll D, Moser J. Alanyl-phosphatidylglycerol synthase: mechanism of substrate recognition during tRNA-dependent lipid modification in Pseudomonas aeruginosa. Molecular Microbiology. 80: 935-50. PMID 21392131 DOI: 10.1111/J.1365-2958.2011.07621.X  0.505
2011 Miranda HV, Nembhard N, Su D, Hepowit N, Krause DJ, Pritz JR, Phillips C, Söll D, Maupin-Furlow JA. E1- and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea. Proceedings of the National Academy of Sciences of the United States of America. 108: 4417-22. PMID 21368171 DOI: 10.1073/Pnas.1018151108  0.426
2011 Su D, Lieberman A, Lang BF, Simonovic M, Söll D, Ling J. An unusual tRNAThr derived from tRNAHis reassigns in yeast mitochondria the CUN codons to threonine. Nucleic Acids Research. 39: 4866-74. PMID 21321019 DOI: 10.1093/Nar/Gkr073  0.642
2011 Popow J, Englert M, Weitzer S, Schleiffer A, Mierzwa B, Mechtler K, Trowitzsch S, Will CL, Lührmann R, Söll D, Martinez J. HSPC117 is the essential subunit of a human tRNA splicing ligase complex. Science (New York, N.Y.). 331: 760-4. PMID 21311021 DOI: 10.1126/Science.1197847  0.437
2011 Englert M, Sheppard K, Aslanian A, Yates JR, Söll D. Archaeal 3'-phosphate RNA splicing ligase characterization identifies the missing component in tRNA maturation. Proceedings of the National Academy of Sciences of the United States of America. 108: 1290-5. PMID 21209330 DOI: 10.1073/Pnas.1018307108  0.681
2011 Yuan J, Gogakos T, Babina AM, Söll D, Randau L. Change of tRNA identity leads to a divergent orthogonal histidyl-tRNA synthetase/tRNAHis pair. Nucleic Acids Research. 39: 2286-93. PMID 21087993 DOI: 10.1093/Nar/Gkq1176  0.71
2011 Sherrer RL, Araiso Y, Aldag C, Ishitani R, Ho JM, Söll D, Nureki O. C-terminal domain of archaeal O-phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNA(Sec). Nucleic Acids Research. 39: 1034-41. PMID 20870747 DOI: 10.1093/Nar/Gkq845  0.506
2010 Agamy O, Ben Zeev B, Lev D, Marcus B, Fine D, Su D, Narkis G, Ofir R, Hoffmann C, Leshinsky-Silver E, Flusser H, Sivan S, Söll D, Lerman-Sagie T, Birk OS. Mutations disrupting selenocysteine formation cause progressive cerebello-cerebral atrophy. American Journal of Human Genetics. 87: 538-44. PMID 20920667 DOI: 10.1016/J.Ajhg.2010.09.007  0.453
2010 Englert M, Sheppard K, Gundllapalli S, Beier H, Söll D. Branchiostoma floridae has separate healing and sealing enzymes for 5'-phosphate RNA ligation. Proceedings of the National Academy of Sciences of the United States of America. 107: 16834-9. PMID 20837552 DOI: 10.1073/Pnas.1011703107  0.653
2010 Heinemann IU, Randau L, Tomko RJ, Söll D. 3'-5' tRNAHis guanylyltransferase in bacteria. Febs Letters. 584: 3567-72. PMID 20650272 DOI: 10.1016/J.Febslet.2010.07.023  0.733
2010 Palioura S, Herkel J, Simonović M, Lohse AW, Söll D. Human SepSecS or SLA/LP: selenocysteine formation and autoimmune hepatitis. Biological Chemistry. 391: 771-6. PMID 20623998 DOI: 10.1515/Bc.2010.078  0.684
2010 Nureki O, O'Donoghue P, Watanabe N, Ohmori A, Oshikane H, Araiso Y, Sheppard K, Söll D, Ishitani R. Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: a missing link in the evolution of Gln-tRNAGln formation. Nucleic Acids Research. 38: 7286-97. PMID 20601684 DOI: 10.1093/Nar/Gkq605  0.724
2010 Ambrogelly A, O'Donoghue P, Söll D, Moses S. A bacterial ortholog of class II lysyl-tRNA synthetase activates lysine. Febs Letters. 584: 3055-60. PMID 20580719 DOI: 10.1016/J.Febslet.2010.05.036  0.532
2010 Yuan J, Hohn MJ, Sherrer RL, Palioura S, Su D, Söll D. A tRNA-dependent cysteine biosynthesis enzyme recognizes the selenocysteine-specific tRNA in Escherichia coli. Febs Letters. 584: 2857-61. PMID 20493852 DOI: 10.1016/J.Febslet.2010.05.028  0.782
2010 Rampias T, Sheppard K, Söll D. The archaeal transamidosome for RNA-dependent glutamine biosynthesis. Nucleic Acids Research. 38: 5774-83. PMID 20457752 DOI: 10.1093/Nar/Gkq336  0.695
2010 Ling J, Söll D. Severe oxidative stress induces protein mistranslation through impairment of an aminoacyl-tRNA synthetase editing site. Proceedings of the National Academy of Sciences of the United States of America. 107: 4028-33. PMID 20160114 DOI: 10.1073/Pnas.1000315107  0.641
2010 Mandal D, Köhrer C, Su D, Russell SP, Krivos K, Castleberry CM, Blum P, Limbach PA, Söll D, RajBhandary UL. Agmatidine, a modified cytidine in the anticodon of archaeal tRNA(Ile), base pairs with adenosine but not with guanosine. Proceedings of the National Academy of Sciences of the United States of America. 107: 2872-7. PMID 20133752 DOI: 10.1073/Pnas.0914869107  0.562
2010 Nakamura A, Sheppard K, Yamane J, Yao M, Söll D, Tanaka I. Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition. Nucleic Acids Research. 38: 672-82. PMID 19906721 DOI: 10.1093/Nar/Gkp955  0.695
2010 Yuan J, O'Donoghue P, Ambrogelly A, Gundllapalli S, Sherrer RL, Palioura S, Simonović M, Söll D. Distinct genetic code expansion strategies for selenocysteine and pyrrolysine are reflected in different aminoacyl-tRNA formation systems. Febs Letters. 584: 342-9. PMID 19903474 DOI: 10.1016/J.Febslet.2009.11.005  0.761
2010 Heinemann IU, Söll D, Randau L. Transfer RNA processing in archaea: unusual pathways and enzymes. Febs Letters. 584: 303-9. PMID 19878676 DOI: 10.1016/J.Febslet.2009.10.067  0.734
2009 Heinemann IU, O'Donoghue P, Madinger C, Benner J, Randau L, Noren CJ, Söll D. The appearance of pyrrolysine in tRNAHis guanylyltransferase by neutral evolution. Proceedings of the National Academy of Sciences of the United States of America. 106: 21103-8. PMID 19965368 DOI: 10.1073/Pnas.0912072106  0.757
2009 Araiso Y, Sherrer RL, Ishitani R, Ho JM, Söll D, Nureki O. Structure of a tRNA-dependent kinase essential for selenocysteine decoding. Proceedings of the National Academy of Sciences of the United States of America. 106: 16215-20. PMID 19805283 DOI: 10.1073/Pnas.0908861106  0.454
2009 Alkalaeva E, Eliseev B, Ambrogelly A, Vlasov P, Kondrashov FA, Gundllapalli S, Frolova L, Söll D, Kisselev L. Translation termination in pyrrolysine-utilizing archaea. Febs Letters. 583: 3455-60. PMID 19796638 DOI: 10.1016/J.Febslet.2009.09.044  0.449
2009 Palioura S, Sherrer RL, Steitz TA, Söll D, Simonovic M. The human SepSecS-tRNASec complex reveals the mechanism of selenocysteine formation. Science (New York, N.Y.). 325: 321-5. PMID 19608919 DOI: 10.1126/Science.1173755  0.811
2009 Mitchell M, Xue S, Erdman R, Randau L, Söll D, Li H. Crystal structure and assembly of the functional Nanoarchaeum equitans tRNA splicing endonuclease. Nucleic Acids Research. 37: 5793-802. PMID 19578064 DOI: 10.1093/Nar/Gkp537  0.665
2009 Alfonzo JD, Söll D. Mitochondrial tRNA import--the challenge to understand has just begun. Biological Chemistry. 390: 717-22. PMID 19558325 DOI: 10.1515/Bc.2009.101  0.366
2009 Wu J, Bu W, Sheppard K, Kitabatake M, Kwon ST, Söll D, Smith JL. Insights into tRNA-dependent amidotransferase evolution and catalysis from the structure of the Aquifex aeolicus enzyme. Journal of Molecular Biology. 391: 703-16. PMID 19520089 DOI: 10.1016/J.Jmb.2009.06.014  0.689
2009 Randau L, Stanley BJ, Kohlway A, Mechta S, Xiong Y, Söll D. A cytidine deaminase edits C to U in transfer RNAs in Archaea. Science (New York, N.Y.). 324: 657-9. PMID 19407206 DOI: 10.1126/Science.1170123  0.72
2009 Charrière F, O'Donoghue P, Helgadóttir S, Maréchal-Drouard L, Cristodero M, Horn EK, Söll D, Schneider A. Dual targeting of a tRNAAsp requires two different aspartyl-tRNA synthetases in Trypanosoma brucei. The Journal of Biological Chemistry. 284: 16210-7. PMID 19386587 DOI: 10.1074/Jbc.M109.005348  0.408
2009 Aeby E, Palioura S, Pusnik M, Marazzi J, Lieberman A, Ullu E, Söll D, Schneider A. The canonical pathway for selenocysteine insertion is dispensable in Trypanosomes. Proceedings of the National Academy of Sciences of the United States of America. 106: 5088-92. PMID 19279205 DOI: 10.1073/Pnas.0901575106  0.767
2009 Nozawa K, O'Donoghue P, Gundllapalli S, Araiso Y, Ishitani R, Umehara T, Söll D, Nureki O. Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality. Nature. 457: 1163-7. PMID 19118381 DOI: 10.1038/Nature07611  0.553
2009 Su D, Hohn MJ, Palioura S, Sherrer RL, Yuan J, Söll D, O'Donoghue P. How an obscure archaeal gene inspired the discovery of selenocysteine biosynthesis in humans. Iubmb Life. 61: 35-9. PMID 18798524 DOI: 10.1002/Iub.136  0.723
2009 Nakamura A, Sheppard K, Yamane J, Yao M, Soll D, Tanaka I. 1SP7-03 tRNA recognition and molecular evolution of GatCAB(1SP7 Elucidation of Protein Functions at the Atomic Level with X-ray structural, Vibrational spectroscopic, Molecular biological and Theoretical analyses,The 47th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 49: S9. DOI: 10.2142/Biophys.49.S9_1  0.552
2008 Ruan B, Palioura S, Sabina J, Marvin-Guy L, Kochhar S, Larossa RA, Söll D. Quality control despite mistranslation caused by an ambiguous genetic code. Proceedings of the National Academy of Sciences of the United States of America. 105: 16502-7. PMID 18946032 DOI: 10.1073/Pnas.0809179105  0.853
2008 Gundllapalli S, Ambrogelly A, Umehara T, Li D, Polycarpo C, Söll D. Misacylation of pyrrolysine tRNA in vitro and in vivo. Febs Letters. 582: 3353-8. PMID 18775710 DOI: 10.1016/J.Febslet.2008.08.027  0.379
2008 Yuan J, Sheppard K, Söll D. Amino acid modifications on tRNA. Acta Biochimica Et Biophysica Sinica. 40: 539-53. PMID 18604446 DOI: 10.1111/J.1745-7270.2008.00435.X  0.721
2008 Rubio MA, Rinehart JJ, Krett B, Duvezin-Caubet S, Reichert AS, Söll D, Alfonzo JD. Mammalian mitochondria have the innate ability to import tRNAs by a mechanism distinct from protein import. Proceedings of the National Academy of Sciences of the United States of America. 105: 9186-91. PMID 18587046 DOI: 10.1073/Pnas.0804283105  0.656
2008 Randau L, Söll D. Transfer RNA genes in pieces. Embo Reports. 9: 623-8. PMID 18552771 DOI: 10.1038/Embor.2008.101  0.705
2008 Randau L, Schröder I, Söll D. Life without RNase P. Nature. 453: 120-3. PMID 18451863 DOI: 10.1038/Nature06833  0.729
2008 RajBhandary UL, Söll D. Aminoacyl-tRNAs, the bacterial cell envelope, and antibiotics. Proceedings of the National Academy of Sciences of the United States of America. 105: 5285-6. PMID 18385375 DOI: 10.1073/Pnas.0801193105  0.679
2008 Sheppard K, Sherrer RL, Söll D. Methanothermobacter thermautotrophicus tRNA Gln confines the amidotransferase GatCAB to asparaginyl-tRNA Asn formation. Journal of Molecular Biology. 377: 845-53. PMID 18291416 DOI: 10.1016/J.Jmb.2008.01.064  0.621
2008 Sheppard K, Söll D. On the evolution of the tRNA-dependent amidotransferases, GatCAB and GatDE. Journal of Molecular Biology. 377: 831-44. PMID 18279892 DOI: 10.1016/J.Jmb.2008.01.016  0.698
2008 Sherrer RL, Ho JM, Söll D. Divergence of selenocysteine tRNA recognition by archaeal and eukaryotic O-phosphoseryl-tRNASec kinase. Nucleic Acids Research. 36: 1871-80. PMID 18267971 DOI: 10.1093/Nar/Gkn036  0.5
2008 Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Söll D. From one amino acid to another: tRNA-dependent amino acid biosynthesis. Nucleic Acids Research. 36: 1813-25. PMID 18252769 DOI: 10.1093/Nar/Gkn015  0.731
2008 Sheppard K, Akochy PM, Söll D. Assays for transfer RNA-dependent amino acid biosynthesis. Methods (San Diego, Calif.). 44: 139-45. PMID 18241795 DOI: 10.1016/J.Ymeth.2007.06.010  0.707
2008 Hendrickson EL, Liu Y, Rosas-Sandoval G, Porat I, Söll D, Whitman WB, Leigh JA. Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate. Journal of Bacteriology. 190: 2198-205. PMID 18203827 DOI: 10.1128/Jb.01805-07  0.379
2008 Sherrer RL, O'Donoghue P, Söll D. Characterization and evolutionary history of an archaeal kinase involved in selenocysteinyl-tRNA formation. Nucleic Acids Research. 36: 1247-59. PMID 18174226 DOI: 10.1093/Nar/Gkm1134  0.461
2008 Araiso Y, Palioura S, Ishitani R, Sherrer RL, O'Donoghue P, Yuan J, Oshikane H, Domae N, Defranco J, Söll D, Nureki O. Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation. Nucleic Acids Research. 36: 1187-99. PMID 18158303 DOI: 10.1093/Nar/Gkm1122  0.752
2008 Randau L, Söll D. Response by Lennart Randau & Dieter Söll Embo Reports. 9: 820-821. DOI: 10.1038/Embor.2008.154  0.708
2007 Namy O, Zhou Y, Gundllapalli S, Polycarpo CR, Denise A, Rousset JP, Söll D, Ambrogelly A. Adding pyrrolysine to the Escherichia coli genetic code. Febs Letters. 581: 5282-8. PMID 17967457 DOI: 10.1016/J.Febslet.2007.10.022  0.455
2007 Levengood JD, Roy H, Ishitani R, Söll D, Nureki O, Ibba M. Anticodon recognition and discrimination by the alpha-helix cage domain of class I lysyl-tRNA synthetase. Biochemistry. 46: 11033-8. PMID 17760422 DOI: 10.1021/Bi700815A  0.648
2007 Kavran JM, Gundllapalli S, O'Donoghue P, Englert M, Söll D, Steitz TA. Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation. Proceedings of the National Academy of Sciences of the United States of America. 104: 11268-73. PMID 17592110 DOI: 10.1073/Pnas.0704769104  0.655
2007 Herring S, Ambrogelly A, Gundllapalli S, O'Donoghue P, Polycarpo CR, Söll D. The amino-terminal domain of pyrrolysyl-tRNA synthetase is dispensable in vitro but required for in vivo activity Febs Letters. 581: 3197-3203. PMID 17582401 DOI: 10.1016/J.Febslet.2007.06.004  0.762
2007 Ambrogelly A, Gundllapalli S, Herring S, Polycarpo C, Frauer C, Söll D. Pyrrolysine is not hardwired for cotranslational insertion at UAG codons Proceedings of the National Academy of Sciences of the United States of America. 104: 3141-3146. PMID 17360621 DOI: 10.1073/Pnas.0611634104  0.773
2007 Sheppard K, Akochy PM, Salazar JC, Söll D. The Helicobacter pylori amidotransferase GatCAB is equally efficient in glutamine-dependent transamidation of Asp-tRNAAsn and Glu-tRNAGln. The Journal of Biological Chemistry. 282: 11866-73. PMID 17329242 DOI: 10.1074/Jbc.M700398200  0.716
2007 Kamtekar S, Hohn MJ, Park HS, Schnitzbauer M, Sauerwald A, Söll D, Steitz TA. Toward understanding phosphoseryl-tRNACys formation: the crystal structure of Methanococcus maripaludis phosphoseryl-tRNA synthetase. Proceedings of the National Academy of Sciences of the United States of America. 104: 2620-5. PMID 17301225 DOI: 10.1073/Pnas.0611504104  0.659
2007 Herring S, Ambrogelly A, Polycarpo CR, Söll D. Recognition of pyrrolysine tRNA by the Desulfitobacterium hafniense pyrrolysyl-tRNA synthetase Nucleic Acids Research. 35: 1270-1278. PMID 17267409 DOI: 10.1093/Nar/Gkl1151  0.75
2007 Namgoong S, Sheppard K, Sherrer RL, Söll D. Co-evolution of the archaeal tRNA-dependent amidotransferase GatCAB with tRNA(Asn). Febs Letters. 581: 309-14. PMID 17214986 DOI: 10.1016/J.Febslet.2006.12.033  0.691
2007 Ambrogelly A, Palioura S, Söll D. Natural expansion of the genetic code. Nature Chemical Biology. 3: 29-35. PMID 17173027 DOI: 10.1038/Nchembio847  0.748
2007 Helgadóttir S, Rosas-Sandoval G, Söll D, Graham DE. Biosynthesis of phosphoserine in the Methanococcales Journal of Bacteriology. 189: 575-582. PMID 17071763 DOI: 10.1128/Jb.01269-06  0.431
2007 Araiso Y, Pailouer S, Ishitani R, Oshikane H, Domae N, Soll D, Nureki O. 3P019 Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation(Proteins-structure and structure-function relationship,Poster Presentations) Seibutsu Butsuri. 47. DOI: 10.2142/Biophys.47.S207_4  0.311
2007 Ambrogelly A, Salazar JC, Sheppard K, Polycarpo C, Oshikane H, Nakamura Y, Fukai S, Nureki O, Söll D. Aminoacyl-tRNAs: Deciphering and Defining the Genetic Message Archaea: Evolution, Physiology, and Molecular Biology. 207-215. DOI: 10.1002/9780470750865.ch18  0.552
2006 Söll D, RajBhandary UL. The genetic code - thawing the 'frozen accident'. Journal of Biosciences. 31: 459-63. PMID 17206066 DOI: 10.1007/Bf02705185  0.542
2006 Yuan J, Palioura S, Salazar JC, Su D, O'Donoghue P, Hohn MJ, Cardoso AM, Whitman WB, Söll D. RNA-dependent conversion of phosphoserine forms selenocysteine in eukaryotes and archaea. Proceedings of the National Academy of Sciences of the United States of America. 103: 18923-7. PMID 17142313 DOI: 10.1073/Pnas.0609703104  0.786
2006 Polycarpo CR, Herring S, Bérubé A, Wood JL, Söll D, Ambrogelly A. Pyrrolysine analogues as substrates for pyrrolysyl-tRNA synthetase. Febs Letters. 580: 6695-700. PMID 17126325 DOI: 10.1016/J.Febslet.2006.11.028  0.761
2006 Cardoso AM, Polycarpo C, Martins OB, Söll D. A non-discriminating aspartyl-tRNA synthetase from Halobacterium salinarum. Rna Biology. 3: 110-4. PMID 17114946 DOI: 10.4161/Rna.3.3.3116  0.572
2006 Hohn MJ, Park HS, O'Donoghue P, Schnitzbauer M, Söll D. Emergence of the universal genetic code imprinted in an RNA record Proceedings of the National Academy of Sciences of the United States of America. 103: 18095-18100. PMID 17110438 DOI: 10.1073/Pnas.0608762103  0.523
2006 Oshikane H, Sheppard K, Fukai S, Nakamura Y, Ishitani R, Numata T, Sherrer RL, Feng L, Schmitt E, Panvert M, Blanquet S, Mechulam Y, Söll D, Nureki O. Structural basis of RNA-dependent recruitment of glutamine to the genetic code. Science (New York, N.Y.). 312: 1950-4. PMID 16809540 DOI: 10.1126/Science.1128470  0.679
2006 Bilokapic S, Maier T, Ahel D, Gruic-Sovulj I, Söll D, Weygand-Durasevic I, Ban N. Structure of the unusual seryl-tRNA synthetase reveals a distinct zinc-dependent mode of substrate recognition Embo Journal. 25: 2498-2509. PMID 16675947 DOI: 10.1038/Sj.Emboj.7601129  0.816
2006 Charrière F, Helgadóttir S, Horn EK, Söll D, Schneider A. Dual targeting of a single tRNATrp requires two different tryptophanyl-tRNA synthesis in Typanosoma brucei Proceedings of the National Academy of Sciences of the United States of America. 103: 6847-6852. PMID 16636268 DOI: 10.1073/Pnas.0602362103  0.534
2006 Choi JJ, Nam KH, Min B, Kim SJ, Söll D, Kwon ST. Protein trans-splicing and characterization of a split family B-type DNA polymerase from the hyperthermophilic archaeal parasite Nanoarchaeum equitans Journal of Molecular Biology. 356: 1093-1106. PMID 16412462 DOI: 10.1016/J.Jmb.2005.12.036  0.351
2006 Sabina J, Söll D. The RNA-binding PUA domain of archaeal tRNA-guanine transglycosylase is not required for archaeosine formation. The Journal of Biological Chemistry. 281: 6993-7001. PMID 16407303 DOI: 10.1074/Jbc.M512841200  0.816
2006 Oshikane H, Sheppard K, Nakamura Y, Fukai S, Feng L, Numata T, Ishitani R, Soll D, Nureki O. 2P168 Structural Basis of RNA-Dependent Recruitment of Glutamine to the Genetic Code(35. RNA world,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006) Seibutsu Butsuri. 46: S337. DOI: 10.2142/Biophys.46.S337_4  0.583
2005 Randau L, Calvin K, Hall M, Yuan J, Podar M, Li H, Söll D. The heteromeric Nanoarchaeum equitans splicing endonuclease cleaves noncanonical bulge-helix-bulge motifs of joined tRNA halves. Proceedings of the National Academy of Sciences of the United States of America. 102: 17934-9. PMID 16330750 DOI: 10.1073/Pnas.0509197102  0.743
2005 Levicán G, Katz A, Valenzuela P, Söll D, Orellana O. A tRNA(Glu) that uncouples protein and tetrapyrrole biosynthesis. Febs Letters. 579: 6383-7. PMID 16271718 DOI: 10.1016/J.Febslet.2005.09.100  0.517
2005 Ambrogelly A, Kamtekar S, Stathopoulos C, Kennedy D, Söll D. Asymmetric behavior of archaeal prolyl-tRNA synthetase Febs Letters. 579: 6017-6022. PMID 16226256 DOI: 10.1016/J.Febslet.2005.09.025  0.506
2005 Ahel D, Slade D, Mocibob M, Söll D, Weygand-Durasevic I. Selective inhibition of divergent seryl-tRNA synthetases by serine analogues Febs Letters. 579: 4344-4348. PMID 16054140 DOI: 10.1016/J.Febslet.2005.06.073  0.814
2005 Sauerwald A, Sitaramaiah D, McCloskey JA, Söll D, Crain PF. N6-Acetyladenosine: a new modified nucleoside from Methanopyrus kandleri tRNA. Febs Letters. 579: 2807-10. PMID 15907485 DOI: 10.1016/J.Febslet.2005.04.014  0.403
2005 Randau L, Pearson M, Söll D. The complete set of tRNA species in Nanoarchaeum equitans. Febs Letters. 579: 2945-7. PMID 15893316 DOI: 10.1016/J.Febslet.2005.04.051  0.723
2005 Ruan B, Söll D. The bacterial YbaK protein is a Cys-tRNAPro and Cys-tRNA Cys deacylase. The Journal of Biological Chemistry. 280: 25887-91. PMID 15886196 DOI: 10.1074/Jbc.M502174200  0.446
2005 Ambrogelly A, Frugier M, Ibba M, Söll D, Giegé R. Transfer RNA recognition by class I lysyl-tRNA synthetase from the Lyme disease pathogen Borrelia burgdorferi. Febs Letters. 579: 2629-34. PMID 15862301 DOI: 10.1016/J.Febslet.2005.04.001  0.547
2005 Sauerwald A, Zhu W, Major TA, Roy H, Palioura S, Jahn D, Whitman WB, Yates JR, Ibba M, Söll D. RNA-dependent cysteine biosynthesis in archaea. Science (New York, N.Y.). 307: 1969-72. PMID 15790858 DOI: 10.1126/Science.1108329  0.822
2005 Feng L, Yuan J, Toogood H, Tumbula-Hansen D, Söll D. Aspartyl-tRNA synthetase requires a conserved proline in the anticodon-binding loop for tRNA(Asn) recognition in vivo. The Journal of Biological Chemistry. 280: 20638-41. PMID 15781458 DOI: 10.1074/Jbc.M500874200  0.537
2005 Rinehart J, Krett B, Rubio MA, Alfonzo JD, Söll D. Saccharomyces cerevisiae imports the cytosolic pathway for Gln-tRNA synthesis into the mitochondrion. Genes & Development. 19: 583-92. PMID 15706032 DOI: 10.1101/Gad.1269305  0.681
2005 Randau L, Münch R, Hohn MJ, Jahn D, Söll D. Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves. Nature. 433: 537-41. PMID 15690044 DOI: 10.1038/Nature03233  0.742
2005 Feng L, Sheppard K, Tumbula-Hansen D, Söll D. Gln-tRNAGln formation from Glu-tRNAGln requires cooperation of an asparaginase and a Glu-tRNAGln kinase. The Journal of Biological Chemistry. 280: 8150-5. PMID 15611111 DOI: 10.1074/Jbc.M411098200  0.685
2005 Ruan B, Bovee ML, Sacher M, Stathopoulos C, Poralla K, Francklyn CS, Söll D. A unique hydrophobic cluster near the active site contributes to differences in borrelidin inhibition among threonyl-tRNA synthetases. The Journal of Biological Chemistry. 280: 571-7. PMID 15507440 DOI: 10.1074/Jbc.M411039200  0.424
2004 Feng L, Sheppard K, Namgoong S, Ambrogelly A, Polycarpo C, Randau L, Tumbula-Hansen D, Söll D. Aminoacyl-tRNA synthesis by pre-translational amino acid modification. Rna Biology. 1: 16-20. PMID 17194933 DOI: 10.4161/Rna.1.1.953  0.819
2004 Ambrogelly A, Kamtekar S, Sauerwald A, Ruan B, Tumbula-Hansen D, Kennedy D, Ahel I, Söll D. Cys-tRNACys formation and cysteine biosynthesis in methanogenic archaea: two faces of the same problem? Cellular and Molecular Life Sciences. 61: 2437-2445. PMID 15526152 DOI: 10.1007/S00018-004-4194-9  0.791
2004 Korencic D, Polycarpo C, Weygand-Durasevic I, Söll D. Differential modes of transfer RNASer recognition in Methanosarcina barkeri. The Journal of Biological Chemistry. 279: 48780-6. PMID 15364939 DOI: 10.1074/Jbc.M408753200  0.819
2004 Polycarpo C, Ambrogelly A, Bérubé A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Söll D. An aminoacyl-tRNA synthetase that specifically activates pyrrolysine. Proceedings of the National Academy of Sciences of the United States of America. 101: 12450-4. PMID 15314242 DOI: 10.1073/Pnas.0405362101  0.552
2004 Korencic D, Ahel I, Schelert J, Sacher M, Ruan B, Stathopoulos C, Blum P, Ibba M, Söll D. A freestanding proofreading domain is required for protein synthesis quality control in Archaea. Proceedings of the National Academy of Sciences of the United States of America. 101: 10260-5. PMID 15240874 DOI: 10.1073/Pnas.0403926101  0.807
2004 Randau L, Schauer S, Ambrogelly A, Salazar JC, Moser J, Sekine S, Yokoyama S, Söll D, Jahn D. tRNA recognition by glutamyl-tRNA reductase. The Journal of Biological Chemistry. 279: 34931-7. PMID 15194701 DOI: 10.1074/Jbc.M401529200  0.743
2004 Salazar JC, Ambrogelly A, Crain PF, McCloskey JA, Söll D. A truncated aminoacyl-tRNA synthetase modifies RNA. Proceedings of the National Academy of Sciences of the United States of America. 101: 7536-41. PMID 15096612 DOI: 10.1073/Pnas.0401982101  0.567
2004 Ibba M, Söll D. Aminoacyl-tRNAs: setting the limits of the genetic code. Genes & Development. 18: 731-8. PMID 15082526 DOI: 10.1101/Gad.1187404  0.569
2004 Bilokapic S, Korencic D, Söll D, Weygand-Durasevic I. The unusual methanogenic seryl-tRNA synthetase recognizes tRNASer species from all three kingdoms of life. European Journal of Biochemistry / Febs. 271: 694-702. PMID 14764085 DOI: 10.1111/J.1432-1033.2003.03971.X  0.826
2004 Núñez H, Lefimil C, Min B, Söll D, Orellana O. In vivo formation of glutamyl-tRNA(Gln) in Escherichia coli by heterologous glutamyl-tRNA synthetases. Febs Letters. 557: 133-5. PMID 14741355 DOI: 10.1016/S0014-5793(03)01460-1  0.493
2004 Ruan B, Nakano H, Tanaka M, Mills JA, DeVito JA, Min B, Low KB, Battista JR, Söll D. Cysteinyl-tRNA(Cys) formation in Methanocaldococcus jannaschii: the mechanism is still unknown. Journal of Bacteriology. 186: 8-14. PMID 14679218 DOI: 10.1128/Jb.186.1.8-14.2004  0.408
2004 Rinehart J, Horn EK, Wei D, Soll D, Schneider A. Non-canonical eukaryotic glutaminyl- and glutamyl-tRNA synthetases form mitochondrial aminoacyl-tRNA in Trypanosoma brucei. The Journal of Biological Chemistry. 279: 1161-6. PMID 14563839 DOI: 10.1074/Jbc.M310100200  0.672
2003 Ahel I, Korencic D, Ibba M, Söll D. Trans-editing of mischarged tRNAs. Proceedings of the National Academy of Sciences of the United States of America. 100: 15422-7. PMID 14663147 DOI: 10.1073/Pnas.2136934100  0.836
2003 Salazar JC, Ahel I, Orellana O, Tumbula-Hansen D, Krieger R, Daniels L, Söll D. Coevolution of an aminoacyl-tRNA synthetase with its tRNA substrates. Proceedings of the National Academy of Sciences of the United States of America. 100: 13863-8. PMID 14615592 DOI: 10.1073/Pnas.1936123100  0.796
2003 Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, Barnstead M, Beeson KY, Bibbs L, Bolanos R, Keller M, Kretz K, Lin X, Mathur E, Ni J, Podar M, et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proceedings of the National Academy of Sciences of the United States of America. 100: 12984-8. PMID 14566062 DOI: 10.1073/Pnas.1735403100  0.752
2003 Polycarpo C, Ambrogelly A, Ruan B, Tumbula-Hansen D, Ataide SF, Ishitani R, Yokoyama S, Nureki O, Ibba M, Söll D. Activation of the pyrrolysine suppressor tRNA requires formation of a ternary complex with class I and class II lysyl-tRNA synthetases. Molecular Cell. 12: 287-94. PMID 14536069 DOI: 10.1016/S1097-2765(03)00280-6  0.61
2003 Sabina J, Dover N, Templeton LJ, Smulski DR, Söll D, LaRossa RA. Interfering with different steps of protein synthesis explored by transcriptional profiling of Escherichia coli K-12. Journal of Bacteriology. 185: 6158-70. PMID 14526028 DOI: 10.1128/Jb.185.20.6158-6170.2003  0.764
2003 Min B, Kitabatake M, Polycarpo C, Pelaschier J, Raczniak G, Ruan B, Kobayashi H, Namgoong S, Söll D. Protein synthesis in Escherichia coli with mischarged tRNA. Journal of Bacteriology. 185: 3524-6. PMID 12775689 DOI: 10.1128/Jb.185.12.3524-3526.2003  0.841
2003 Feng L, Tumbula-Hansen D, Toogood H, Soll D. Expanding tRNA recognition of a tRNA synthetase by a single amino acid change. Proceedings of the National Academy of Sciences of the United States of America. 100: 5676-81. PMID 12730374 DOI: 10.1073/Pnas.0631525100  0.542
2003 Kamtekar S, Kennedy WD, Wang J, Stathopoulos C, Söll D, Steitz TA. The structural basis of cysteine aminoacylation of tRNAPro by prolyl-tRNA synthetases. Proceedings of the National Academy of Sciences of the United States of America. 100: 1673-8. PMID 12578991 DOI: 10.1073/Pnas.0437911100  0.676
2002 Rosas-Sandoval G, Ambrogelly A, Rinehart J, Wei D, Cruz-Vera LR, Graham DE, Stetter KO, Guarneros G, Söll D. Orthologs of a novel archaeal and of the bacterial peptidyl-tRNA hydrolase are nonessential in yeast. Proceedings of the National Academy of Sciences of the United States of America. 99: 16707-12. PMID 12475929 DOI: 10.1073/Pnas.222659199  0.675
2002 Gruic-Sovulj I, Landeka I, Söll D, Weygand-Durasevic I. tRNA-dependent amino acid discrimination by yeast seryl-tRNA synthetase. European Journal of Biochemistry / Febs. 269: 5271-9. PMID 12392560 DOI: 10.1046/J.1432-1033.2002.03241.X  0.857
2002 Korencić D, Söll D, Ambrogelly A. A one-step method for in vitro production of tRNA transcripts. Nucleic Acids Research. 30: e105. PMID 12384607 DOI: 10.1093/Nar/Gnf104  0.422
2002 Schauer S, Chaturvedi S, Randau L, Moser J, Kitabatake M, Lorenz S, Verkamp E, Schubert WD, Nakayashiki T, Murai M, Wall K, Thomann HU, Heinz DW, Inokuchi H, Söll D, et al. Escherichia coli glutamyl-tRNA reductase. Trapping the thioester intermediate. The Journal of Biological Chemistry. 277: 48657-63. PMID 12370189 DOI: 10.1074/Jbc.M206924200  0.707
2002 Tumbula-Hansen D, Feng L, Toogood H, Stetter KO, Söll D. Evolutionary divergence of the archaeal aspartyl-tRNA synthetases into discriminating and nondiscriminating forms. The Journal of Biological Chemistry. 277: 37184-90. PMID 12149259 DOI: 10.1074/Jbc.M204767200  0.55
2002 Ujwal ML, McCormac AC, Goulding A, Kumar AM, Söll D, Terry MJ. Divergent regulation of the HEMA gene family encoding glutamyl-tRNA reductase in Arabidopsis thaliana: expression of HEMA2 is regulated by sugars, but is independent of light and plastid signalling. Plant Molecular Biology. 50: 83-91. PMID 12139011 DOI: 10.1023/A:1016081114758  0.33
2002 Ambrogelly A, Ahel I, Polycarpo C, Bunjun-Srihari S, Krett B, Jacquin-Becker C, Ruan B, Köhrer C, Stathopoulos C, RajBhandary UL, Söll D. Methanocaldococcus jannaschii prolyl-tRNA synthetase charges tRNA(Pro) with cysteine. The Journal of Biological Chemistry. 277: 34749-54. PMID 12130658 DOI: 10.1074/Jbc.M206929200  0.795
2002 Ahel I, Stathopoulos C, Ambrogelly A, Sauerwald A, Toogood H, Hartsch T, Söll D. Cysteine activation is an inherent in vitro property of prolyl-tRNA synthetases. The Journal of Biological Chemistry. 277: 34743-8. PMID 12130657 DOI: 10.1074/Jbc.M206928200  0.809
2002 Ibba M, Söll D. Genetic code: introducing pyrrolysine. Current Biology : Cb. 12: R464-6. PMID 12121639 DOI: 10.1016/S0960-9822(02)00947-8  0.651
2002 Feng L, Stathopoulos C, Ahel I, Mitra A, Tumbula-Hansen D, Hartsch T, Söll D. Aminoacyl-tRNA formation in the extreme thermophile Thermus thermophilus Extremophiles. 6: 167-174. PMID 12013438 DOI: 10.1007/S007920100245  0.815
2002 Kitabatake M, Ali K, Demain A, Sakamoto K, Yokoyama S, Söll D. Indolmycin resistance of Streptomyces coelicolor A3(2) by induced expression of one of its two tryptophanyl-tRNA synthetases. The Journal of Biological Chemistry. 277: 23882-7. PMID 11970956 DOI: 10.1074/Jbc.M202639200  0.711
2002 Jacquin-Becker C, Ahel I, Ambrogelly A, Ruan B, Söll D, Stathopoulos C. Cysteinyl-tRNA formation and prolyl-tRNA synthetase. Febs Letters. 514: 34-6. PMID 11904177 DOI: 10.1016/S0014-5793(02)02331-1  0.808
2002 Terada T, Nureki O, Ishitani R, Ambrogelly A, Ibba M, Söll D, Yokoyama S. Functional convergence of two lysyl-tRNA synthetases with unrelated topologies. Nature Structural Biology. 9: 257-62. PMID 11887185 DOI: 10.1038/Nsb777  0.623
2002 Min B, Pelaschier JT, Graham DE, Tumbula-Hansen D, Söll D. Transfer RNA-dependent amino acid biosynthesis: an essential route to asparagine formation. Proceedings of the National Academy of Sciences of the United States of America. 99: 2678-83. PMID 11880622 DOI: 10.1073/Pnas.012027399  0.826
2001 Stathopoulos C, Ahel I, Ali K, Ambrogelly A, Becker H, Bunjun S, Feng L, Herring S, Jacquin-Becker C, Kobayashi H, Korencic D, Krett B, Mejlhede N, Min B, Nakano H, et al. Aminoacyl-tRNA synthesis: a postgenomic perspective. Cold Spring Harbor Symposia On Quantitative Biology. 66: 175-83. PMID 12762020 DOI: 10.1101/Sqb.2001.66.175  0.808
2001 Ruan B, Ahel I, Ambrogelly A, Becker HD, Bunjun S, Feng L, Tumbula-Hansen D, Ibba M, Korencic D, Kobayashi H, Jacquin-Becker C, Mejlhede N, Min B, Raczniak G, Rinehart J, et al. Genomics and the evolution of aminoacyl-tRNA synthesis. Acta Biochimica Polonica. 48: 313-21. PMID 11732603 DOI: 10.18388/Abp.2001_3917  0.854
2001 Stathopoulos C, Kim W, Li T, Anderson I, Deutsch B, Palioura S, Whitman W, Söll D. Cysteinyl-tRNA synthetase is not essential for viability of the archaeon Methanococcus maripaludis. Proceedings of the National Academy of Sciences of the United States of America. 98: 14292-7. PMID 11717392 DOI: 10.1073/Pnas.201540498  0.763
2001 McCloskey JA, Graham DE, Zhou S, Crain PF, Ibba M, Konisky J, Söll D, Olsen GJ. Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales. Nucleic Acids Research. 29: 4699-706. PMID 11713320 DOI: 10.1093/Nar/29.22.4699  0.617
2001 Raczniak G, Becker HD, Min B, Söll D. A single amidotransferase forms asparaginyl-tRNA and glutaminyl-tRNA in Chlamydia trachomatis. The Journal of Biological Chemistry. 276: 45862-7. PMID 11585842 DOI: 10.1074/Jbc.M109494200  0.861
2001 Ibba M, Stathopoulos C, Söll D. Protein synthesis: Twenty three amino acids and counting Current Biology. 11. PMID 11509255 DOI: 10.1016/S0960-9822(01)00344-X  0.635
2001 Salazar JC, Zúiga R, Raczniak G, Becker H, Söll D, Orellana O. A dual-specific Glu-tRNAGln and Asp-tRNAAsn amidotransferase is involved in decoding glutamine and asparagine codons in Acidithiobacillus ferrooxidans Febs Letters. 500: 129-131. PMID 11445070 DOI: 10.1016/S0014-5793(01)02600-X  0.842
2001 Ibba M, Söll D. The renaissance of aminoacyl-tRNA synthesis Embo Reports. 2: 382-387. PMID 11375928 DOI: 10.1093/Embo-Reports/Kve095  0.68
2001 McCormac AC, Fischer A, Kumar AM, Söll D, Terry MJ. Regulation of HEMA1 expression by phytochrome and a plastid signal during de-etiolation in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 25: 549-61. PMID 11309145 DOI: 10.1046/J.1365-313X.2001.00986.X  0.315
2001 Yu S, Lei H, Chang W, Söll D, Hong G. Protein phosphatase 2A: identification in Oryza sativa of the gene encoding the regulatory A subunit. Plant Molecular Biology. 45: 107-12. PMID 11247601 DOI: 10.1023/A:1006472722500  0.433
2001 Raczniak G, Ibba M, Söll D. Genomics-based identification of targets in pathogenic bacteria for potential therapeutic and diagnostic use Toxicology. 160: 181-189. PMID 11246138 DOI: 10.1016/S0300-483X(00)00454-6  0.816
2001 Salazar JC, Zuiga R, Lefimil C, Söll D, Orellana O. Conserved amino acids near the carboxy terminus of bacterial tyrosyl-tRNA synthetase are involved in tRNA and Tyr-AMP binding Febs Letters. 491: 257-260. PMID 11240138 DOI: 10.1016/S0014-5793(01)02214-1  0.495
2001 Stathopoulos C, Jacquin-Becker C, Becker HD, Li T, Ambrogelly A, Longman R, Söll D. Methanococcus jannaschii prolyl-cysteinyl-tRNA synthetase possesses overlapping amino acid binding sites Biochemistry. 40: 46-52. PMID 11141055 DOI: 10.1021/Bi002108X  0.749
2001 Hamano-Takaku F, Iwama T, Saito-Yano S, Takaku K, Monden Y, Kitabatake M, Soll D, Nishimura S. A mutant Escherichia coli tyrosyl-tRNA synthetase utilizes the unnatural amino acid azatyrosine more efficiently than tyrosine. The Journal of Biological Chemistry. 275: 40324-8. PMID 11006270 DOI: 10.1074/Jbc.M003696200  0.487
2000 Söll D, Becker HD, Plateau P, Blanquet S, Ibba M. Context-dependent anticodon recognition by class I lysyl-tRNA synthetases Proceedings of the National Academy of Sciences of the United States of America. 97: 14224-14228. PMID 11121028 DOI: 10.1073/Pnas.97.26.14224  0.764
2000 Bunjun S, Stathopoulos C, Graham D, Min B, Kitabatake M, Wang AL, Wang CC, Vivarès CP, Weiss LM, Söll D. A dual-specificity aminoacyl-tRNA synthetase in the deep-rooted eukaryote Giardia lamblia Proceedings of the National Academy of Sciences of the United States of America. 97: 12997-13002. PMID 11078517 DOI: 10.1073/Pnas.230444397  0.565
2000 Praetorius-Ibba M, Stange-Thomann N, Kitabatake M, Ali K, Söll I, Carter CW, Ibba M, Söll D. Ancient adaptation of the active site of tryptophanyl-tRNA synthetase for tryptophan binding. Biochemistry. 39: 13136-43. PMID 11052665 DOI: 10.1021/bi001512t  0.601
2000 Tumbula DL, Becker HD, Chang WZ, Söll D. Domain-specific recruitment of amide amino acids for protein synthesis. Nature. 407: 106-10. PMID 10993083 DOI: 10.1038/35024120  0.773
2000 Ibba M, Soll D. Aminoacyl-tRNA synthesis. Annual Review of Biochemistry. 69: 617-50. PMID 10966471 DOI: 10.1146/Annurev.Biochem.69.1.617  0.705
2000 Ibba M, Becker HD, Stathopoulos C, Tumbula DL, Soll D. Author correction Trends in Biochemical Sciences. 25: 380. PMID 10916157  0.38
2000 Becker HD, Min B, Jacobi C, Raczniak G, Pelaschier J, Roy H, Klein S, Kern D, Söll D. The heterotrimeric Thermus thermophilus Asp-tRNA(Asn) amidotransferase can also generate Gln-tRNA(Gln) Febs Letters. 476: 140-144. PMID 10913601 DOI: 10.1016/S0014-5793(00)01697-5  0.831
2000 Ibba M, Becker HD, Stathopoulos C, Tumbula DL, Söll D. The Adaptor hypothesis revisited Trends in Biochemical Sciences. 25: 311-316. PMID 10871880 DOI: 10.1016/S0968-0004(00)01600-5  0.78
2000 Kim HS, Kim IY, Söll D, Lee SY. Transfer RNA identity change in anticodon variants of E. Coli tRNAPhe in vivo Molecules and Cells. 10: 76-82. PMID 10774751 DOI: 10.1007/S10059-000-0076-7  0.521
2000 Woese CR, Olsen GJ, Ibba M, Söll D. Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. Microbiology and Molecular Biology Reviews : Mmbr. 64: 202-36. PMID 10704480 DOI: 10.1128/Mmbr.64.1.202-236.2000  0.619
2000 Stathopoulos C, Li T, Longman R, Vothknecht UC, Becker HD, Ibba M, Söll D. One polypeptide with two aminoacyl-tRNA synthetase activities Science. 287: 479-482. PMID 10642548 DOI: 10.1126/Science.287.5452.479  0.815
2000 Kumar AM, Söll D. Antisense HEMA1 RNA Expression Inhibits Heme and Chlorophyll Biosynthesis in Arabidopsis Plant Physiology. 122: 49-56. PMID 10631248 DOI: 10.1104/Pp.122.1.49  0.349
2000 Kitabatake M, So MW, Tumbula DL, Söll D. Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes Journal of Bacteriology. 182: 143-145. PMID 10613873 DOI: 10.1128/Jb.182.1.143-145.2000  0.351
1999 Deruère J, Jackson K, Garbers C, Söll D, Delong A. The RCN1-encoded A subunit of protein phosphatase 2A increases phosphatase activity in vivo. The Plant Journal : For Cell and Molecular Biology. 20: 389-99. PMID 10607292 DOI: 10.1046/J.1365-313X.1999.00607.X  0.374
1999 Ibba M, Söll D. Quality control mechanisms during translation Science. 286: 1893-1897. PMID 10583945 DOI: 10.1126/Science.286.5446.1893  0.653
1999 Ibba M, Sever S, Praetorius-Ibba M, Söll D. Transfer RNA identity contributes to transition state stabilization during aminoacyl-tRNA synthesis. Nucleic Acids Research. 27: 3631-7. PMID 10471730 DOI: 10.1093/Nar/27.18.3631  0.782
1999 Tumbula D, Vothknecht UC, Kim HS, Ibba M, Min B, Li T, Pelaschier J, Stathopoulos C, Becker H, Söll D. Archaeal aminoacyl-tRNA synthesis: Diversity replaces dogma Genetics. 152: 1269-1276. PMID 10430557  0.849
1999 Ibba M, Losey HC, Kawarabayasi Y, Kikuchi H, Bunjun S, Söll D. Substrate recognition by class I lysyl-tRNA synthetases: a molecular basis for gene displacement. Proceedings of the National Academy of Sciences of the United States of America. 96: 418-23. PMID 9892648 DOI: 10.1073/Pnas.96.2.418  0.603
1998 Kim HS, Vothknecht UC, Hedderich R, Celic I, Söll D. Sequence divergence of seryl-tRNA synthetases in archaea Journal of Bacteriology. 180: 6446-6449. PMID 9851985 DOI: 10.1128/Jb.180.24.6446-6449.1998  0.472
1998 Lenhard B, Prætorius-Ibba M, Filipic S, Söll D, Weygand-Durasevic I. C-terminal truncation of yeast SerRS is toxic for Saccharomyces cerevisiae due to altered mechanism of substrate recognition. Febs Letters. 439: 235-240. PMID 9845329 DOI: 10.1016/S0014-5793(98)01376-3  0.662
1998 Curnow AW, Tumbula DL, Pelaschier JT, Min B, Söll D. Glutamyl-tRNA(Gln) amidotransferase in Deinococcus radiodurans may be confined to asparagine biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 95: 12838-43. PMID 9789001 DOI: 10.1073/Pnas.95.22.12838  0.857
1998 Rokov J, Söll D, Weygand-Durasević I. Maize mitochondrial seryl-tRNA synthetase recognizes Escherichia coli tRNA(Ser) in vivo and in vitro. Plant Molecular Biology. 38: 497-502. PMID 9747857 DOI: 10.1023/A:1006088516228  0.511
1998 Hong KW, Ibba M, Söll D. Retracing the evolution of amino acid specificity in glutaminyl-tRNA synthetase Febs Letters. 434: 149-154. PMID 9738468 DOI: 10.1016/S0014-5793(98)00968-5  0.696
1998 Liu J, Ibba M, Hong KW, Söll D. The terminal adenosine of tRNA(Gln) mediates tRNA-dependent amine acid recognition by glutaminyl-tRNA synthetase Biochemistry. 37: 9836-9842. PMID 9657697 DOI: 10.1021/Bi980704+  0.646
1997 Ibba M, Bono JL, Rosa PA, Söll D. Archaeal-type lysyl-tRNA synthetase in the Lyme disease spirochete Borrelia burgdorferi Proceedings of the National Academy of Sciences of the United States of America. 94: 14383-14388. PMID 9405621 DOI: 10.1073/Pnas.94.26.14383  0.688
1997 Freist W, Gauss DH, Ibba M, Söll D. Glutaminyl-tRNA synthetase. Biological Chemistry. 378: 1103-17. PMID 9372179  0.642
1997 Schimmel P, Söll D. When protein engineering confronts the tRNA world. Proceedings of the National Academy of Sciences of the United States of America. 94: 10007-10009. PMID 9294151 DOI: 10.1073/Pnas.94.19.10007  0.411
1997 Kim SI, Stange-Thomann N, Martins O, Hong KW, Soll D, Fox TD. A nuclear genetic lesion affecting Saccharomyces cerevisiae mitochondrial translation is complemented by a homologous Bacillus gene Journal of Bacteriology. 179: 5625-5627. PMID 9287027 DOI: 10.1128/Jb.179.17.5625-5627.1997  0.394
1997 Lenhard B, Filipić S, Landeka I, Škrtić I, Söll D, Weygand-Durašević I. Defining the Active Site of Yeast Seryl-tRNA Synthetase MUTATIONS IN MOTIF 2 LOOP RESIDUES AFFECT tRNA-DEPENDENT AMINO ACID RECOGNITION Journal of Biological Chemistry. 272: 1136-1141. PMID 8995413 DOI: 10.1074/Jbc.272.2.1136  0.726
1996 Ibba M, Hong KW, Söll D. Glutaminyl-tRNA synthetase: From genetics to molecular recognition Genes to Cells. 1: 421-427. PMID 9078373 DOI: 10.1046/J.1365-2443.1996.D01-255.X  0.718
1996 Kitabatake M, Ibba M, Hong KW, Söll D, Inokuchi H. Genetic analysis of functional connectivity between substrate recognition domains of Escherichia coli glutaminyl-tRNA synthetase Molecular and General Genetics. 252: 717-722. PMID 8917315 DOI: 10.1007/Bf02173978  0.675
1996 Kim SI, Nalaskowska M, Germond J, Pridmore D, Söll D. Asn-tRNA in Lactobacillus Bulgaricus is Formed by Asparaginylation of tRNA and not by Transamidation of Asp-tRNA Nucleic Acids Research. 24: 2648-2651. PMID 8758990 DOI: 10.1093/Nar/24.14.2648  0.47
1996 Ibba M, Hong KW, Sherman JM, Sever S, Söll D. Interactions between tRNA identity nucleotides and their recognition sites in glutaminyl-tRNA synthetase determine the cognate amino acid affinity of the enzyme. Proceedings of the National Academy of Sciences of the United States of America. 93: 6953-8. PMID 8692925 DOI: 10.1073/Pnas.93.14.6953  0.809
1996 Ibba M, Soll D. Protein-RNA molecular recognition [7] Nature. 381: 656. PMID 8649510 DOI: 10.1038/381656A0  0.567
1996 Kim SI, Germond J-, Pridmore D, Soll D. Lactobacillus bulgaricus asparagine synthetase and asparaginyl-tRNA synthetase: coregulation by transcription antitermination? Journal of Bacteriology. 178: 2459-2461. PMID 8636057 DOI: 10.1128/Jb.178.8.2459-2461.1996  0.441
1996 Hong KW, Ibba M, Weygand-Duraševic I, Rogers MJ, Thomann HU, Söll D. Transfer RNA-dependent cognate amino acid recognition by an aminoacyl-tRNA synthetase Embo Journal. 15: 1983-1991. PMID 8617245  0.664
1996 Kumar AM, Csankovszki G, Söll D. A second and differentially expressed glutamyl-tRNA reductase gene from Arabidopsis thaliana. Plant Molecular Biology. 30: 419-26. PMID 8605295 DOI: 10.1007/Bf00049321  0.427
1996 Weygand-Durasevic I, Lenhard B, Filipic S, Söll D. The C-terminal Extension of Yeast Seryl-tRNA Synthetase Affects Stability of the Enzyme and Its Substrate Affinity Journal of Biological Chemistry. 271: 2455-2461. PMID 8576207 DOI: 10.1074/Jbc.271.5.2455  0.66
1996 Sherman JM, Söll D. Aminoacyl-tRNA synthetases optimize both cognate tRNA recognition and discrimination against noncognate tRNAs. Biochemistry. 35: 601-7. PMID 8555233 DOI: 10.1021/Bi951602B  0.485
1996 Sever S, Rogers K, Rogers MJ, Carter C, Söll D. Escherichia coli tryptophanyl-tRNA synthetase mutants selected for tryptophan auxotrophy implicate the dimer interface in optimizing amino acid binding. Biochemistry. 35: 32-40. PMID 8555191 DOI: 10.1021/Bi952103D  0.752
1996 Ibba M, Söll D. 'Distorted' RNA helix recognition Nature. 384: 422-422. DOI: 10.1038/384422B0  0.548
1996 Kumar AM, Schaub U, Söll D, Ujwal ML. Glutamyl-transfer RNA: at the crossroad between chlorophyll and protein biosynthesis Trends in Plant Science. 1: 371-376. DOI: 10.1016/S1360-1385(96)80311-6  0.483
1996 Garbers C, DeLong A, Deruére J, Bernasconi P, Söll D. A mutation in protein phosphatase 2A regulatory subunit A affects auxin transport in Arabidopsis. The Embo Journal. 15: 2115-2124. DOI: 10.1002/J.1460-2075.1996.Tb00565.X  0.343
1995 Ibba M, Thomann HU, Hong KW, Sherman JM, Weygand-Durasevic I, Sever S, Stange-Thomann N, Praetorius M, Söll D. Substrate selection by aminoacyl-tRNA synthetases. Nucleic Acids Symposium Series. 40-2. PMID 8643392  0.785
1995 Rogers KC, Söll D. Divergence Of Glutamate And Glutamine Aminoacylation Pathways: Providing The Evolutionary Rationale For Mischarging Journal of Molecular Evolution. 40: 476-481. PMID 7783222 DOI: 10.1007/Bf00166615  0.501
1995 Rogers KC, Crescenzo AT, Söll D. Aminoacylation Of Transfer Rnas With 2-Thiouridine Derivatives In The Wobble Position Of The Anticodon Biochimie. 77: 66-74. PMID 7541255 DOI: 10.1016/0300-9084(96)88106-5  0.468
1995 Simmons C, Migliaccio F, Masson P, Caspar T, Soll D. A novel root gravitropism mutant of Arabidopsis thaliana exhibiting altered auxin physiology Physiologia Plantarum. 93: 790-798. DOI: 10.1111/J.1399-3054.1995.Tb05133.X  0.342
1994 Weygand-Durasević I, Nalaskowska M, Söll D. Coexpression of eukaryotic tRNASer and yeast seryl-tRNA synthetase leads to functional amber suppression in Escherichia coli. Journal of Bacteriology. 176: 232-239. PMID 8282701 DOI: 10.1128/Jb.176.1.232-239.1994  0.444
1994 Stange-Thomann N, Thomann HU, Lloyd AJ, Lyman H, Söll D. A point mutation in Euglena gracilis chloroplast tRNA(Glu) uncouples protein and chlorophyll biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 91: 7947-51. PMID 8058739 DOI: 10.1073/Pnas.91.17.7947  0.543
1994 Leong-Morgenthaler P, Oliver SG, Hottinger H, Söll D. A Lactobacillus nifS-like gene suppresses an Escherichia coli transaminase B mutation Biochimie. 76: 45-49. PMID 8031904 DOI: 10.1016/0300-9084(94)90061-2  0.419
1994 Ilag LL, Kumar AM, Söll D. Light Regulation of Chlorophyll Biosynthesis at the Level of 5-Aminolevulinate Formation in Arabidopsis The Plant Cell. 6: 265-275. PMID 7908550 DOI: 10.1105/Tpc.6.2.265  0.489
1994 Rogers MJ, Adachi T, Inokuchi H, Söll D. Functional communication in the recognition of tRNA by Escherichia coli glutaminyl-tRNA synthetase Proceedings of the National Academy of Sciences of the United States of America. 91: 291-295. PMID 7506418 DOI: 10.1073/Pnas.91.1.291  0.492
1993 Verkamp E, Backman VM, Björnsson JM, Söll D, Eggertsson G. The periplasmic dipeptide permease system transports 5-aminolevulinic acid in Escherichia coli. Journal of Bacteriology. 175: 1452-6. PMID 8444807 DOI: 10.1128/Jb.175.5.1452-1456.1993  0.355
1993 Kolman C, Söll D. SPL1-1, a Saccharomyces cerevisiae mutation affecting tRNA splicing. Journal of Bacteriology. 175: 1433-1442. PMID 8444805 DOI: 10.1128/Jb.175.5.1433-1442.1993  0.418
1993 Sylvers LA, Rogers KC, Shimizu M, Ohtsuka E, Soll D. A 2-thiouridine derivative in tRNAGlu is a positive determinant for aminoacylation by Escherichia coli glutamyl-tRNA synthetase Biochemistry. 32: 3836-3841. PMID 8385989 DOI: 10.1021/Bi00066A002  0.509
1993 Zimmerly S, Drainas D, Sylvers LA, Soll D. Identification of a 100‐kDa protein associated with nuclear ribonuclease P activity in Schizosaccharomyces pombe Febs Journal. 217: 501-507. PMID 8223594 DOI: 10.1111/J.1432-1033.1993.Tb18270.X  0.404
1993 Hesse T, Garbers C, Brzobohaty B, Kreimer G, Söll D, Melkonian M, Schell J, Palme K. Two members of the ERabp gene family are expressed differentially in reproductive organs but to similar levels in the coleoptile of maize. Plant Molecular Biology. 23: 57-66. PMID 8219056 DOI: 10.1007/Bf00021419  0.353
1993 Rogers MJ, Weygand-Durasevi? I, Schwob E, Sherman JM, Rogers KC, Adachi T, Inokuchi H, Söll D. Selectivity and specificity in the recognition of tRNA by E coli glutaminyl-tRNA synthetase. Biochimie. 75: 1083-90. PMID 8199243 DOI: 10.1016/0300-9084(93)90007-F  0.506
1993 Wright DJ, Martinis SA, Jahn M, Söll D, Schimmel P. Acceptor stem and anticodon RNA hairpin helix interactions with glutamine tRNA synthetase Biochimie. 75: 1041-1049. PMID 8199240 DOI: 10.1016/0300-9084(93)90003-B  0.355
1993 Schwob E, Choi SY, Simmons C, Migliaccio F, Ilag L, Hesse T, Palme K, Söll D. Molecular analysis of three maize 22 kDa auxin-binding protein genes--transient promoter expression and regulatory regions. The Plant Journal : For Cell and Molecular Biology. 4: 423-32. PMID 7693132 DOI: 10.1046/J.1365-313X.1993.04030423.X  0.795
1993 Weygand‐Durašević I, Ban N, Jahn D, Söll D. Yeast seryl‐tRNA synthetase expressed in Escherichia coli recognizes bacterial serine‐specific tRNAs in vivo Febs Journal. 214: 869-877. PMID 7686490 DOI: 10.1111/J.1432-1033.1993.Tb17990.X  0.406
1993 Weygand-Durasević I, Schwob E, Söll D. Acceptor end binding domain interactions ensure correct aminoacylation of transfer RNA. Proceedings of the National Academy of Sciences of the United States of America. 90: 2010-2014. PMID 7680483 DOI: 10.1073/Pnas.90.5.2010  0.488
1993 Rogers KC, Soll D. Discrimination among tRNAs intermediate in glutamate and glutamine acceptor identity. Biochemistry. 32: 14210-14219. PMID 7505112 DOI: 10.1021/Bi00214A021  0.477
1993 Schön A, Gough S, Söll D. Chloroplast tRNA(Asp): nucleotide sequence and variation of in vivo levels during plastid maturation. Plant Molecular Biology. 20: 601-7. PMID 1450377 DOI: 10.1007/Bf00046445  0.395
1993 Söll D. 7 Transfer RNA: An RNA for All Seasons Cold Spring Harbor Monograph Archive. 24: 157-184. DOI: 10.1101/087969380.24.157  0.394
1993 Lloyd AJ, Weitzman PD, Söll D. Incomplete citric acid cycle obliges aminolevulinic acid synthesis via the C5 pathway in a methylotroph Microbiology. 139: 2931-2938. DOI: 10.1099/00221287-139-12-2931  0.399
1993 Schwob E, Söll D. Selection of a minimal glutaminyl-tRNA synthetase and the evolution of class I synthetases The Embo Journal. 12: 5201-5208. DOI: 10.1002/J.1460-2075.1993.Tb06215.X  0.517
1992 Beresten S, Jahn M, Söll D. Aminoacyl-tRNA synthetase-induced cleavage of tRNA Nucleic Acids Research. 20: 1523-1530. PMID 1579445 DOI: 10.1093/Nar/20.7.1523  0.48
1992 Rogers MJ, Adachi T, Inokuchi H, Söll D. Switching tRNAGln identity from glutamine to tryptophan Proceedings of the National Academy of Sciences of the United States of America. 89: 3463-3467. PMID 1565639 DOI: 10.1073/Pnas.89.8.3463  0.469
1992 Sherman JM, Rogers K, Rogers MJ, Söll D. Synthetase competition and tRNA context determine the in vivo identify of tRNA discriminator mutants. Journal of Molecular Biology. 228: 1055-62. PMID 1474577 DOI: 10.1016/0022-2836(92)90314-A  0.502
1992 Sherman JM, Rogers MJ, Söll D. Competition of aminoacyl-tRNA synthetases for tRNA ensures the accuracy of aminoacylation. Nucleic Acids Research. 20: 2847-52. PMID 1377381 DOI: 10.1093/Nar/20.11.2847  0.527
1992 Ishino Y, Morgenthaler P, Hottinger H, Söll D. Organization and nucleotide sequence of the glutamine synthetase (glnA) gene from Lactobacillus delbrueckii subsp. bulgaricus. Applied and Environmental Microbiology. 58: 3165-3169. DOI: 10.1128/Aem.58.9.3165-3169.1992  0.376
1992 Hayase Y, Jahn M, Rogers MJ, Sylvers LA, Koizumi M, Inoue H, Ohtsuka E, Söll D. Recognition of bases in Escherichia coli tRNA(Gln) by glutaminyl-tRNA synthetase: a complete identity set. The Embo Journal. 11: 4159-4165. DOI: 10.1002/J.1460-2075.1992.Tb05509.X  0.504
1991 Ilag LL, Jahn D, Eggertsson G, Söll D. The Escherichia coli hemL gene encodes glutamate 1-semialdehyde aminotransferase. Journal of Bacteriology. 173: 3408-13. PMID 2045363 DOI: 10.1128/Jb.173.11.3408-3413.1991  0.445
1991 O'Neill GP, Thorbjarnardóttir S, Michelsen U, Pálsson S, Söll D, Eggertsson G. delta-Aminolevulinic acid dehydratase deficiency can cause delta-aminolevulinate auxotrophy in Escherichia coli. Journal of Bacteriology. 173: 94-100. PMID 1987138 DOI: 10.1128/Jb.173.1.94-100.1991  0.406
1991 Jahn M, Rogers MJ, Söll D. Anticodon and acceptor stem nucleotides in tRNAGln are major recognition elements for E. coli glutaminyl-tRNA synthetase Nature. 352: 258-260. PMID 1857423 DOI: 10.1038/352258A0  0.528
1991 O'Neill GP, Jahn D, Söll D. Transfer RNA involvement in chlorophyll biosynthesis. Sub-Cellular Biochemistry. 17: 235-64. PMID 1796486 DOI: 10.1007/978-1-4613-9365-8_11  0.405
1990 Perona JJ, Swanson RN, Rould MA, Steitz TA, Söll D. Structural basis for misaminoacylation by mutant E. coli glutaminyl-tRNA synthetase enzymes. Science (New York, N.Y.). 246: 1152-4. PMID 2686030 DOI: 10.1126/Science.2686030  0.795
1990 Rould MA, Perona JJ, Söll D, Steitz TA. Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 A resolution. Science (New York, N.Y.). 246: 1135-42. PMID 2479982 DOI: 10.1126/Science.2479982  0.776
1990 Söll D. The accuracy of aminoacylation--ensuring the fidelity of the genetic code. Cellular and Molecular Life Sciences. 46: 1089-1096. PMID 2253707 DOI: 10.1007/Bf01936918  0.545
1990 Zimmerly S, Gamulin V, Burkard U, Söll D. The RNA component of RNase P in Schizosaccharomyces species. Febs Letters. 271: 189-193. PMID 2226803 DOI: 10.1016/0014-5793(90)80403-6  0.341
1990 O'Neill GP, Schön A, Chow H, Chen M, Kim Y, Söll D. Sequence of tRNAGlu and its genes from the chloroplast genome of Chlamydomonas reinhardtii Nucleic Acids Research. 18: 5893-5893. PMID 2216788 DOI: 10.1093/Nar/18.19.5893  0.304
1990 Nichols M, Willis I, Söll D. Yeast suppressor mutations and transfer RNA processing. Methods in Enzymology. 181: 377-394. PMID 2199758 DOI: 10.1016/0076-6879(90)81137-J  0.496
1990 Williams JB, Cooley L, Soll D. Enzymatic addition of guanylate to histidine transfer RNA Methods in Enzymology. 181: 451-462. PMID 2166216 DOI: 10.1016/0076-6879(90)81143-I  0.452
1990 O'Neill GP, Söll D. Expression of the Synechocystis sp. strain PCC 6803 tRNA(Glu) gene provides tRNA for protein and chlorophyll biosynthesis. Journal of Bacteriology. 172: 6363-6371. PMID 2121711 DOI: 10.1128/Jb.172.11.6363-6371.1990  0.519
1989 Drainas D, Zimmerly S, Willis IM, Söll D. Substrate structural requirements of Schizosaccharomyces pombe RNase P. Febs Letters. 251: 84-88. PMID 2666172 DOI: 10.1016/0014-5793(89)81433-4  0.359
1989 Schön A, Böck A, Ott G, Söll D. The selenocysteine-inserting opal suppressor serine tRNA from E.coli is highly unusual in structure and modification Nucleic Acids Research. 17: 7159-7165. PMID 2529478 DOI: 10.1093/Nar/17.18.7159  0.53
1989 Plumbridge J, Söll D. Characterization of cis-acting mutations which increase expression of a glnS-lacZ fusion in Escherichia coli. Molecular & General Genetics : Mgg. 216: 113-9. PMID 2471922 DOI: 10.1007/Bf00332238  0.324
1989 O'Neill GP, Chen M, Söll D. δ‐Aminolevulinic acid biosynthesis in Escherichia coli and Bacillus subtilis involves formation of glutamyl‐tRNA Fems Microbiology Letters. 60: 255-259. DOI: 10.1111/J.1574-6968.1989.Tb03482.X  0.388
1988 Schön A, Kannangara CG, Gough S, Söll D. Protein biosynthesis in organelles requires misaminoacylation of tRNA. Nature. 331: 187-90. PMID 3340166 DOI: 10.1038/331187A0  0.506
1988 Rogers MJ, Ohgi T, Plumbridge J, Söll D. Nucleotide sequences of the Escherichia coli nagE and nagB genes: the structural genes for the N-acetylglucosamine transport protein of the bacterial phosphoenolpyruvate: sugar phosphotransferase system and for glucosamine-6-phosphate deaminase. Gene. 62: 197-207. PMID 3284790 DOI: 10.1016/0378-1119(88)90558-6  0.329
1988 Nichols M, Soll D, Willis I. Yeast RNase P: catalytic activity and substrate binding are separate functions Proceedings of the National Academy of Sciences of the United States of America. 85: 1379-1383. PMID 3278310 DOI: 10.1073/Pnas.85.5.1379  0.48
1988 Uemura H, Rogers MJ, Swanson R, Watson L, Söll D. Site-directed mutagenesis to fine-tune enzyme specificity Protein Engineering, Design and Selection. 2: 293-296. PMID 3150543 DOI: 10.1093/Protein/2.4.293  0.473
1988 Swanson R, Hoben P, Sumner-Smith M, Uemura H, Watson L, Soll D. Accuracy of in vivo aminoacylation requires proper balance of tRNA and aminoacyl-tRNA synthetase. Science. 242: 1548-1551. PMID 3144042 DOI: 10.1126/Science.3144042  0.528
1988 Schön A, Hottinger H, Söll D. Misaminoacylation and transamidation are required for protein biosynthesis in Lactobacillus bulgaricus. Biochimie. 70: 391-394. PMID 3139057 DOI: 10.1016/0300-9084(88)90212-X  0.508
1988 Kolman CJ, Snyder M, Söll D. Genomic organization of tRNA and aminoacyl-tRNA synthetase genes for two amino acids in Saccharomyces cerevisiae. Genomics. 3: 201-206. PMID 3066745 DOI: 10.1016/0888-7543(88)90080-8  0.441
1988 Burkard U, Söll D. The unusually long amino acid acceptor stem of Escherichia coli selenocysteine tRNA results from abnormal cleavage by RNase P. Nucleic Acids Research. 16: 11617-11624. PMID 3062578 DOI: 10.1093/Nar/16.24.11617  0.491
1988 O'Neill GP, Peterson DM, Schön A, Chen MW, Söll D. Formation of the chlorophyll precursor delta-aminolevulinic acid in cyanobacteria requires aminoacylation of a tRNAGlu species. Journal of Bacteriology. 170: 3810-6. PMID 2900830 DOI: 10.1128/Jb.170.9.3810-3816.1988  0.416
1988 Perona JJ, Swanson R, Steitz TA, Söll D. Overproduction and purification of Escherichia coli tRNA(2Gln) and its use in crystallization of the glutaminyl-tRNA synthetase-tRNA(Gln) complex. Journal of Molecular Biology. 202: 121-6. PMID 2459391 DOI: 10.1016/0022-2836(88)90524-4  0.727
1988 Schön A, Söll D. tRNA specificity of a mischarging aminoacyl-tRNA synthetase: Glutamyl-tRNA synthetase from barley chloroplasts Febs Letters. 228: 241-244. DOI: 10.1016/0014-5793(88)80007-3  0.484
1987 Krupp G, Söll D. Simplified in vitro synthesis of mutated RNA molecules: An oligonucleotide promoter determines the initiation site of T7 RNA polymerase on ss M 13 phage DNA Febs Letters. 212: 271-275. PMID 3545903 DOI: 10.1016/0014-5793(87)81359-5  0.349
1987 Hottinger H, Ohgi T, Zwahlen M, Dhamija S, Söll D. Allele-specific complementation of an Escherichia coli leuB mutation by a Lactobacillus bulgaricus tRNA gene Gene. 60: 75-83. PMID 3326787 DOI: 10.1016/0378-1119(87)90215-0  0.449
1987 Weygand-Durasevic I, johnson-Burke D, Söll D. Cloning and characterization of the gene coding for cytoplasmic seryl-tRNA synthetase from Saccharomyces cerevisiae Nucleic Acids Research. 15: 1887-1904. PMID 3031581 DOI: 10.1093/Nar/15.5.1887  0.513
1987 Orellana O, Cooley L, Söll D. The additional guanylate at the 5' terminus of Escherichia coli tRNAHis is the result of unusual processing by RNase P. Molecular and Cellular Biology. 6: 525-9. PMID 3023854 DOI: 10.1128/Mcb.6.2.525  0.401
1987 Glew L, Lo R, Reece T, Nichols M, Söll D, Bell J. The nucleotide sequence, localization and transcriptional properties of a tRNALeuCUG gene from Drosophila melanogaster. Gene. 44: 307-14. PMID 2946625 DOI: 10.1016/0378-1119(86)90195-2  0.346
1986 Schön A, Krupp G, Gough S, Berry-Lowe S, Kannangara CG, Söll D. The RNA required in the first step of chlorophyll biosynthesis is a chloroplast glutamate tRNA. Nature. 322: 281-4. PMID 3637637 DOI: 10.1038/322281A0  0.391
1986 Willis I, Nichols M, Chisholm V, Söll D, Heyer WD, Szankasi P, Amstutz H, Munz P, Kohli J. Functional complementation between mutations in a yeast suppressor tRNA gene reveals potential for evolution of tRNA sequences Proceedings of the National Academy of Sciences of the United States of America. 83: 7860-7864. PMID 3532123 DOI: 10.1073/Pnas.83.20.7860  0.36
1986 Sugiyama T, Rafalski A, Söll D. The nucleotide sequence of a wheat γ-gliadin genomic clone Plant Science. 44: 205-209. DOI: 10.1016/0168-9452(86)90092-0  0.421
1986 Krupp G, Cherayil B, Frendewey D, Nishikawa S, Söll D. Two RNA species co-purify with RNase P from the fission yeast Schizosaccharomyces pombe. The Embo Journal. 5: 1697-1703. DOI: 10.1002/J.1460-2075.1986.Tb04413.X  0.354
1985 Sumner-Smith M, Hottinger H, Willis I, Koch TL, Arentzen R, Söll D. The sup8 tRNALeu gene of Schizosaccharomyces pombe has an unusual intervening sequence and reduced pairing in the anticodon stem. Molecular & General Genetics : Mgg. 197: 447-52. PMID 6597338 DOI: 10.1007/Bf00329941  0.377
1985 Cooley L, Schaack J, Burke DJ, Thomas B, Söll D. Transcription factor binding is limited by the 5'-flanking regions of a Drosophila tRNAHis gene and a tRNAHis pseudogene. Molecular and Cellular Biology. 4: 2714-22. PMID 6570190 DOI: 10.1128/Mcb.4.12.2714  0.355
1985 Hottinger-Werlen A, Schaack J, Lapointe J, Mao J, Nichols M, Söll D. Dimeric tRNA gene arrangement in Schizosaccharomyces pombe allows increased expression of the downstream gene. Nucleic Acids Research. 13: 8739-8747. PMID 3936021 DOI: 10.1093/Nar/13.24.8739  0.32
1985 Stewart TS, Söll D, Sharp S. Point mutations in the 5' ICR and anticodon region of a Drosophila tRNAArg gene decrease in vitro transcription. Nucleic Acids Research. 13: 435-47. PMID 3923433 DOI: 10.1093/Nar/13.2.435  0.369
1985 Pearson D, Willis I, Hottinger H, Bell J, Kumar A, Leupold U, Söll D. Mutations preventing expression of sup3 tRNASer nonsense suppressors of Schizosaccharomyces pombe. Molecular and Cellular Biology. 5: 808-15. PMID 3921825 DOI: 10.1128/Mcb.5.4.808  0.32
1985 Hoben P, Söll D. [8] Glutaminyl-tRNA synthetase of Escherichia coli Methods in Enzymology. 113: 55-59. PMID 3911010 DOI: 10.1016/S0076-6879(85)13011-9  0.565
1985 Krupp G, Thurianx P, Willis I, Gamulin V, Söll D. First identification of an amber nonsense mutation in Schizosaccharomyces pombe: major differences in the efficiency of homologous versus heterologous yeast suppressor tRNA genes. Molecular & General Genetics : Mgg. 201: 82-7. PMID 3903436 DOI: 10.1007/Bf00397990  0.335
1985 Grosjean H, Nicoghosian K, Haumont E, Söll D, Cedergren R. Nucleotide sequences of two serine tRNAs with a GGA anticodon: the structure-function relationships in the serine family of E. coli tRNAs Nucleic Acids Research. 13: 5697-5706. PMID 3898020 DOI: 10.1093/Nar/13.15.5697  0.451
1985 Uemura H, Thorbjarnardóttir S, Gamulin V, Yano J, Andrésson OS, Söll D, Eggertsson G. supN ochre suppressor gene in Escherichia coli codes for tRNALys. Journal of Bacteriology. 163: 1288-1289. PMID 3897192 DOI: 10.1128/Jb.163.3.1288-1289.1985  0.399
1985 Schaack J, Söll D. Transcription of a Drosophila tRNAArg gene in yeast extract: 5′-flanking sequence dependence for transcription in a heterologous system Nucleic Acids Research. 13: 2803-2814. PMID 3889849 DOI: 10.1093/Nar/13.8.2803  0.352
1985 Sumner-Smith M, Rafalski JA, Sugiyama T, Stoll M, Söll D. Conservation and variability of wheat α/β-gliadin genes Nucleic Acids Research. 13: 3905-3916. PMID 3839304 DOI: 10.1093/Nar/13.11.3905  0.35
1985 Thorbjarnardóttir S, Uemura H, Dingermann T, Rafnar T, Thorsteinsdóttir S, Söll D, Eggertsson G. Escherichia coli supH suppressor: temperature-sensitive missense suppression caused by an anticodon change in tRNASer2. Journal of Bacteriology. 161: 207-211. PMID 3155715 DOI: 10.1128/Jb.161.1.207-211.1985  0.419
1985 Sugiyama T, Rafalski A, Peterson D, Söll D. A wheat HMW glutenin subunit gene reveals a highly repeated structure. Nucleic Acids Research. 13: 8729-37. PMID 3001648 DOI: 10.1093/Nar/13.24.8729  0.449
1985 Thorbjarnardóttir S, Dingermann T, Rafnar T, Andrésson OS, Söll D, Eggertsson G. Leucine tRNA family of Escherichia coli: nucleotide sequence of the supP(Am) suppressor gene. Journal of Bacteriology. 161: 219-222. PMID 2981802 DOI: 10.1128/Jb.161.1.219-222.1985  0.426
1984 Kohli J, Munz P, Aebi R, Amstutz H, Gysler C, Heyer W-, Lehmann L, Schuchert P, Szankasi P, Thuriaux P, Leupold U, Bell J, Gamulin V, Hottinger H, Pearson D, et al. Interallelic and intergenic conversion in three serine tRNA genes of Schizosaccharomyces pombe. Cold Spring Harbor Symposia On Quantitative Biology. 49: 31-40. PMID 6597758 DOI: 10.1101/Sqb.1984.049.01.006  0.382
1984 Willis I, Hottinger H, Pearson D, Chisholm V, Leupold U, Söll D. Mutations affecting excision of the intron from a eukaryotic dimeric tRNA precursor. The Embo Journal. 3: 1573-1580. DOI: 10.1002/J.1460-2075.1984.Tb02013.X  0.4
1983 Sharp S, Dingermann T, Söll D. The minimum intragenic sequences required for promotion of eukaryotic tRNA gene transcription. Nucleic Acids Research. 10: 5393-406. PMID 6924209 DOI: 10.1093/Nar/10.18.5393  0.442
1983 Sharp S, Dingermann T, Schaack J, Sharp JA, Burke DJ, Derobertis EM, Söll D. Each element of the Drosophila tRNAArg gene split promoter directs transcription in Xenopus oocytes Nucleic Acids Research. 11: 8677-8690. PMID 6561520 DOI: 10.1093/Nar/11.24.8677  0.361
1983 Gamulin V, Mao J, Appel B, Sumner-Smith M, Yamao F, Söll D. Six Schizosaccharomyces pombe tRNA genes including a gene for a tRNALys with an intervening sequence which cannot base-pair with the anticodon Nucleic Acids Research. 11: 8537-8546. PMID 6561518 DOI: 10.1093/Nar/11.24.8537  0.369
1983 Sharp S, Cooley L, DeFranco D, Dingermann T, Söll D. Organization and expression of tRNA genes in Drosophila melanogaster Recent Results in Cancer Research. Fortschritte Der Krebsforschung. Progres Dans Les Recherches Sur Le Cancer. 84: 1-14. PMID 6405456 DOI: 10.1007/978-3-642-81947-6_1  0.528
1983 Cooley L, Appel B, Söll D. Post-transcriptional nucleotide addition is responsible for the formation of the 5' terminus of histidine tRNA. Proceedings of the National Academy of Sciences of the United States of America. 79: 6475-9. PMID 6292903 DOI: 10.1073/Pnas.79.21.6475  0.478
1983 Rafalski JA, Wiewiórowski M, Söll D. Organization of ribosomal DNA in yellow lupine (Lupinus luteus ) and sequence of the 5.8 S RNA gene Febs Letters. 152: 241-246. DOI: 10.1016/0014-5793(83)80388-3  0.355
1982 Rafalski JA, Wiewiorowski M, Söll D. Organization and nucleotide sequence of nuclear 5S rRNA genes in yellow lupin (Lupinus luteus). Nucleic Acids Research. 10: 7635-42. PMID 7155897 DOI: 10.1093/Nar/10.23.7635  0.324
1982 Sharp S, DeFranco D, Dingermann T, Farrell P, Söll D. Internal control regions for transcription of eukaryotic tRNA genes. Proceedings of the National Academy of Sciences of the United States of America. 78: 6657-61. PMID 6947245 DOI: 10.1073/Pnas.78.11.6657  0.419
1982 Hottinger H, Pearson D, Yamao F, Gamulin V, Colley L, Cooper T, Söll D. Nonsense suppression in Schizosaccharomyces pombe: The S. pombe Sup3-e tRNASer UGA gene is active in S. cerevisiae Mgg Molecular & General Genetics. 188: 219-224. PMID 6818425 DOI: 10.1007/Bf00332678  0.331
1982 Uemura H, Imai M, Ohtsuka E, Ikehara M, Söll D. E. coli initiator tRNA analogs with different nucleotides in the discriminator base position Nucleic Acids Research. 10: 6531-6539. PMID 6294608 DOI: 10.1093/Nar/10.20.6531  0.431
1982 DeFranco D, Burke KB, Hayashi S, Tener GM, Miller RC, Söll D. Genes for tRNALys5 from Drosophila melanogaster. Nucleic Acids Research. 10: 5799-808. PMID 6292853 DOI: 10.1093/Nar/10.19.5799  0.394
1982 Barnitz JT, Cramer JH, Rownd RH, Cooley L, Söll D. Arrangement of the ribosomal RNA genes in Schizosaccharomyces pombe Febs Letters. 143: 129-132. PMID 6288447 DOI: 10.1016/0014-5793(82)80288-3  0.352
1982 Schaak J, Mao J, Söll D. The 5.8S RNA gene sequence and the ribosomal repeat of Schizosaccharomyces pombe. Nucleic Acids Research. 10: 2851-64. PMID 6285312 DOI: 10.1093/Nar/10.9.2851  0.365
1982 Mao J, Appel B, Schaack J, Sharp S, Yamada H, Söll D. The 5S RNA genes of Schizosaccharomyces pombe. Nucleic Acids Research. 10: 487-500. PMID 6278416 DOI: 10.1093/Nar/10.2.487  0.346
1982 Kline LK, Söll D. 19 Nucleotide Modification in RNA The Enzymes. 15: 567-582. DOI: 10.1016/S1874-6047(08)60291-7  0.422
1982 Söll D, Kline LK. 18 RNA Methylation The Enzymes. 15: 557-566. DOI: 10.1016/S1874-6047(08)60290-5  0.374
1981 Sharp S, DeFranco D, Silberklang M, Hosbach HA, Schmidt T, Kubli E, Gergen JP, Wensink PC, Söll D. The initiator tRNA genes of Drosophila melanogaster: evidence for a tRNA pseudogene. Nucleic Acids Research. 9: 5867-82. PMID 6273811 DOI: 10.1093/Nar/9.22.5867  0.391
1981 Dingermann T, Sharp S, Appel B, DeFranco D, Mount S, Heiermann R, Pongs O, Söll D. Transcription of cloned tRNA and 5s RNA genes in a Drosophila cell free extract Nucleic Acids Research. 9: 3907-3918. PMID 6170932 DOI: 10.1093/Nar/9.16.3907  0.338
1981 Sege R, Söll D, Ruddle FH, Queen C. A conversational system for the computer analysis of nucleic acid sequences. Nucleic Acids Research. 9: 437-44. PMID 6163137 DOI: 10.1093/Nar/9.2.437  0.354
1980 Mao J, Schmidt O, Söll D. Dimeric transfer RNA precursors in S. pombe. Cell. 21: 509-16. PMID 7407924 DOI: 10.1016/0092-8674(80)90488-2  0.424
1980 DeFranco D, Schmidt O, Söll D. Two control regions for eukaryotic tRNA gene transcription. Proceedings of the National Academy of Sciences of the United States of America. 77: 3365-8. PMID 6774336 DOI: 10.1073/Pnas.77.6.3365  0.384
1980 Hovemann B, Sharp S, Yamada H, Söll D. Analysis of a drosophila tRNA gene cluster. Cell. 19: 889-95. PMID 6769590 DOI: 10.1016/0092-8674(80)90080-X  0.399
1980 Kohli J, Altruda F, Kwong T, Rafalski A, Wetzel R, Söll D, Wahl G, Leupold U. Nonsense Suppressor tRNA in Schizosaccharomyces pombe Cold Spring Harbor Monograph Archive. 407-419. DOI: 10.1101/087969129.9B.407  0.427
1980 Hovemann B, Schmidt O, Yamada H, Silverman S, Mao J, Defranco D, Söll D. Arrangement and Transcription of Drosophila tRNA Genes Cold Spring Harbor Monograph Archive. 325-338. DOI: 10.1101/087969129.9B.325  0.332
1979 Rafalski A, Kohli J, Agris P, Söll D. The nucleotide sequence of a UGA suppressor serine tRNA from Schizosaccharomyces pombe. Nucleic Acids Research. 6: 2683-95. PMID 461200 DOI: 10.1093/Nar/6.8.2683  0.535
1979 Schimmel PR, Söll D. Aminoacyl-tRNA synthetases: general features and recognition of transfer RNAs. Annual Review of Biochemistry. 48: 601-48. PMID 382994 DOI: 10.1146/Annurev.Bi.48.070179.003125  0.374
1979 Ogden RC, Beckman JS, Abelson J, Kang HS, Söll D, Schmidt O. In vitro transcription and processing of a yeast tRNA gene containing an intervening sequence Cell. 17: 399-406. PMID 378410 DOI: 10.1016/0092-8674(79)90166-1  0.449
1979 Theall G, Low KB, Söll D. Regulation of the biosynthesis of aminoacyl-tRNA synthetases and of tRNA in Escherichia coli. IV. Mutants with increased levels of leucyl- or seryl-tRNA synthetase. Molecular & General Genetics : Mgg. 169: 205-11. PMID 375009 DOI: 10.1007/Bf00271672  0.458
1979 Schmidt O, Mao JI, Silverman S, Hovemann B, Söll D. Specific transcription of eukaryotic tRNA genes in Xenopus germinal vesicle extracts. Proceedings of the National Academy of Sciences of the United States of America. 75: 4819-23. PMID 105357 DOI: 10.1073/Pnas.75.10.4819  0.425
1979 Söll D, Abelson J, Schimmel P. Preface/Front Matter Cold Spring Harbor Monograph Archive. DOI: 10.1101/087969128.9A.I  0.466
1978 Theall G, Low KB, Söll D. Suppression of a defective alanyl-tRNA synthetase in Escherichia coli: a compensatory mutation to high alanine affinity. Molecular & General Genetics : Mgg. 156: 221-7. PMID 340903 DOI: 10.1007/Bf00283495  0.401
1978 Morgan SD, Söll D. Regulation of the Biosynthesis of Aminoacid:tRNA Ligases and of †RNA Progress in Nucleic Acid Research and Molecular Biology. 21: 181-207. DOI: 10.1016/S0079-6603(08)60270-6  0.472
1977 LaRossa RA, Mao J, Low KB, Söll D. Regulation of biosynthesis of aminoacyl-tRNA synthetases and of tRNA in Escherichia coli. III. Biochemical characterization of regulatory mutants affecting leucyl-tRNA synthetase levels. Journal of Molecular Biology. 117: 1049-1059. PMID 342704 DOI: 10.1016/S0022-2836(77)80012-0  0.448
1977 LaRossa R, Vögeli G, Low KB, Söll D. Regulation of biosynthesis of aminoacyl-tRNA synthetases and of tRNA in Escherichia coli. II. Isolation of regulatory mutants affecting leucyl-tRNA synthetase levels. Journal of Molecular Biology. 117: 1033-1048. PMID 342703 DOI: 10.1016/S0022-2836(77)80011-9  0.509
1977 Morgan S, Körner A, Low KB, Söll D. Regulation of biosynthesis of aminoacyl-tRNA synthetases and of tRNA in Escherichia coli Journal of Molecular Biology. 117: 1013-1031. PMID 24122 DOI: 10.1016/S0022-2836(77)80010-7  0.46
1975 Vogeli G, Grosjean H, Soll D. A method for the isolation of specific tRNA precursors Proceedings of the National Academy of Sciences of the United States of America. 72: 4790-4794. PMID 1108001 DOI: 10.1073/Pnas.72.12.4790  0.465
1975 Kwong TC, Steege D, Lawler D, Söll D. Bacteriophage λ induction causes increased production of E. coli lysine transfer RNA Archives of Biochemistry and Biophysics. 170: 651-658. PMID 1103738 DOI: 10.1016/0003-9861(75)90161-7  0.422
1975 McCutchan TF, Gilham PT, Soll D. An improved method for the purification of tRNA by chromatography on dihydroxyboryl substituted cellulose Nucleic Acids Res.. 2: 853-864. PMID 1096084 DOI: 10.1093/Nar/2.6.853  0.691
1975 Agris PF, Armstrong DJ, Schäfer KP, Söll D. Maturation of a hypermodified nucleoside in transfer RNA Nucleic Acids Research. 2: 691-699. PMID 49880 DOI: 10.1093/Nar/2.5.691  0.578
1974 Szeto KS, Söll D. Fingerprinting nonradioactive ribonucleic acid with the aid of polynucleotide phosphorylase Nucleic Acids Research. 1: 171-182. PMID 10793669 DOI: 10.1093/Nar/1.1.171  0.349
1974 Schulman RG, Hilbers CW, Söll D, Yang SK. Letter: Nuclear magnetic resonance of protein-nucleic acid interactions. II. The E. coli tRNA-Glu complex with glutamyl-tRNA synthetase. Journal of Molecular Biology. 90: 609-11. PMID 4615173 DOI: 10.1016/0022-2836(74)90238-1  0.383
1974 Schäfer KP, Söll D. New aspects in tRNA biosynthesis. Biochimie. 56: 795-804. PMID 4614860 DOI: 10.1016/S0300-9084(74)80500-6  0.444
1974 Körner A, Söll D. N-(purin-6-ylcarbamoyl)threonine: biosynthesis in vitro in transfer RNA by an enzyme purified from Escherichia coli. Febs Letters. 39: 301-306. PMID 4604806 DOI: 10.1016/0014-5793(74)80135-3  0.399
1974 Schaefer KP, Altman S, Söll D. Nucleotide modification in vitro of the precursor of transfer RNA of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 70: 3626-30. PMID 4587257 DOI: 10.1073/Pnas.70.12.3626  0.439
1974 Yang C, Söll D. Studies of Transfer RNA Tertiary Structure by Singlet-Singlet Energy Transfer Proceedings of the National Academy of Sciences of the United States of America. 71: 2838-2842. PMID 4527991 DOI: 10.1073/Pnas.71.7.2838  0.331
1974 Seno T, Agris PF, Söll D. Involvement of the anticodon region of Escherichia coli tRNAGln and tRNAGlu in the specific interaction with cognate aminoacyl-tRNA synthetase. Alteration of the 2-thiouridine derivatives located in the anticodon of the tRNAs by BrCN or sulfur deprivation Bba Section Nucleic Acids and Protein Synthesis. 349: 328-338. PMID 4366808 DOI: 10.1016/0005-2787(74)90120-8  0.699
1974 Söll D, Schimmel PR. 15. Aminoacyl-tRNA Synthetases The Enzymes. 10: 489-538. DOI: 10.1016/S1874-6047(08)60147-X  0.542
1973 Agris PF, Koh H, Söll D. The effect of growth temperatures on the in vivo ribose methylation of Bacillus stearothermophilus transfer RNA Archives of Biochemistry and Biophysics. 154: 277-282. PMID 4689778 DOI: 10.1016/0003-9861(73)90058-1  0.548
1973 Yang CH, Söll D. Covalent attachment of fluorescent groups to the 5'-end of transfer RNA. Archives of Biochemistry and Biophysics. 155: 70-81. PMID 4351348 DOI: 10.1016/S0003-9861(73)80010-4  0.387
1972 Allaudeen HS, Yang SK, Söll D. Leucine tRNA1 from HisT mutant of Salmonella typhimurium lacks two pseudouridines Febs Letters. 28: 205-208. PMID 11946859 DOI: 10.1016/0014-5793(72)80713-0  0.42
1972 Bartz JK, Söll D. N6 - (Δ2 - Isopentenyl) Adenosine: Biosynthesis in vitro in transfer RNA by an enzyme purified from Eschericha coli Biochimie. 54: 31-39. PMID 4346747 DOI: 10.1016/S0300-9084(72)80035-X  0.436
1971 Johnson L, Söll D. Temperature dependence of the aminoacylation of tRNA by Bacillus stearothermophilus aminoacyl-tRNA synthetases. Biopolymers. 10: 2209-21. PMID 4940767 DOI: 10.1002/Bip.360101114  0.712
1971 Söll D. Enzymatic Modification of Transfer RNA Science. 173: 293-299. PMID 4934576 DOI: 10.1126/Science.173.3994.293  0.582
1970 Johnson L, Söll D. In vitro biosynthesis of pseudouridine at the polynucleotide level by an enzyme extract from Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 67: 943-50. PMID 4943184 DOI: 10.1073/Pnas.67.2.943  0.689
1970 Bartz JK, Kline LK, Söll D. N6-(Δ2-isopentenyl)adenosine: Biosynthesis in vitro in transfer RNA by an enzyme purified from escherichia coli Biochemical and Biophysical Research Communications. 40: 1481-1487. PMID 4326583 DOI: 10.1016/0006-291X(70)90035-5  0.445
1969 Armstrong DJ, Burrows WJ, Skoog F, Roy KL, Söll D. Cytokinins: distribution in transfer RNA species of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 63: 834-41. PMID 4899879 DOI: 10.1073/Pnas.63.3.834  0.448
1968 Petit JF, Strominger JL, Söll D. Biosynthesis of the peptidoglycan of bacterial cell walls. VII. Incorporation of serine and glycine into interpeptide bridges in Staphylococcus epidermidis. The Journal of Biological Chemistry. 243: 757-67. PMID 5638592  0.373
1968 Roberts WS, Strominger JL, Söll D. Biosynthesis of the peptidoglycan of bacterial cell walls. VI. Incorporation of L-threonine into interpeptide bridges in Micrococcus roseus. The Journal of Biological Chemistry. 243: 749-56. PMID 5638591  0.34
1968 Sundharadas G, Katze JR, Söll D, Konigsberg W, Lengyel P. On the recognition of serine transfer RNA's specific for unrelated codons by the same seryl-transfer RNA synthetase Proceedings of the National Academy of Sciences of the United States of America. 61: 693-700. PMID 4879401 DOI: 10.1073/Pnas.61.2.693  0.475
1968 Roy KL, Söll D. Fractionation of Escherichia coli transfer RNA on benzoylated DEAE-cellulose. Biochimica Et Biophysica Acta. 161: 572-4. PMID 4875424 DOI: 10.1016/0005-2787(68)90137-8  0.354
1968 Bumsted RM, Dahl JL, Söll D, Strominger JL. Biosynthesis of the peptidoglycan of bacterial cell walls. X. Further study of the glycyl transfer ribonucleic acids active in peptidoglycan synthesis in Staphylococcus aureus. The Journal of Biological Chemistry. 243: 779-82. PMID 4867040  0.416
1967 Ghosh HP, Söll D, Khorana HG. Studies on polynucleotides. LXVII. Initiation of protein synthesis in vitro as studied by using ribopolynucleotides with repeating nucleotide sequences as messengers. Journal of Molecular Biology. 25: 275-98. PMID 5340533  0.477
1966 Lohrmann R, Söll D, Hayatsu H, Ohtsuka E, Khorana HG. Studies on polynucleotides. LI. Syntheses of the 64 possible ribotrinucleotides derived from the four major ribomononucleotides. Journal of the American Chemical Society. 88: 819-29. PMID 5902563  0.404
1966 Söll D, Jones DS, Ohtsuka E, Faulkner RD, Lohrmann R, Hayatsu H, Khorana HG. Specificity of sRNA for recognition of codons as studied by the ribosomal binding technique. Journal of Molecular Biology. 19: 556-73. PMID 5338858  0.438
1966 Söll D, Cherayil J, Jones DS, Faulkner RD, Hapel A, Bock RM, Khorana HG. sRNA specificity for codon recognition as studied by the ribosomal binding technique. Cold Spring Harbor Symposia On Quantitative Biology. 31: 51-61. PMID 4866399  0.438
1965 Söll D, Ohtsuka E, Jones DS, Lohrmann R, Hayatsu H, Nishimura S, Khorana HG. Studies on polynucleotides, XLIX. Stimulation of the binding of aminoacyl-sRNA's to ribosomes by ribotrinucleotides and a survey of codon assignments for 20 amino acids. Proceedings of the National Academy of Sciences of the United States of America. 54: 1378-85. PMID 5325653  0.504
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