Shaojun Xie - Publications

Affiliations: 
Purdue University, West Lafayette, IN, United States 
Area:
Genomics

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Ayyappan V, Sripathi VR, Xie S, Saha MC, Hayford R, Serba DD, Subramani M, Thimmapuram J, Todd A, Kalavacharla VK. Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass. Bmc Genomics. 25: 223. PMID 38424499 DOI: 10.1186/s12864-024-10068-w  0.306
2022 Du Y, Xie S, Wang Y, Ma Y, Jia B, Liu X, Rong J, Li R, Zhu X, Song CP, Tao WA, Wang P. Low molecular weight protein phosphatase APH mediates tyrosine dephosphorylation and ABA response in Arabidopsis. Stress Biology. 2: 23. PMID 35935594 DOI: 10.1007/s44154-022-00041-6  0.366
2021 Zhu X, Xie S, Tang K, Kalia RK, Liu N, Ma J, Bressan RA, Zhu JK. Publisher Correction: Non-CG DNA methylation-deficiency mutations enhance mutagenesis rates during salt adaptation in cultured Arabidopsis cells. Stress Biology. 1: 16. PMID 37735294 DOI: 10.1007/s44154-021-00017-y  0.584
2021 Zhu X, Xie S, Tang K, Kalia RK, Liu N, Ma J, Bressan RA, Zhu JK. Non-CG DNA methylation-deficiency mutations enhance mutagenesis rates during salt adaptation in cultured Arabidopsis cells. Stress Biology. 1: 12. PMID 37676538 DOI: 10.1007/s44154-021-00013-2  0.662
2021 Zhao C, Jiang W, Zayed O, Liu X, Tang K, Nie W, Li Y, Xie S, Li Y, Long T, Liu L, Zhu Y, Zhao Y, Zhu JK. The LRXs-RALFs-FER module controls plant growth and salt stress responses by modulating multiple plant hormones. National Science Review. 8: nwaa149. PMID 34691553 DOI: 10.1093/nsr/nwaa149  0.742
2021 Lin Z, Li Y, Wang Y, Liu X, Ma L, Zhang Z, Mu C, Zhang Y, Peng L, Xie S, Song CP, Shi H, Zhu JK, Wang P. Initiation and amplification of SnRK2 activation in abscisic acid signaling. Nature Communications. 12: 2456. PMID 33911084 DOI: 10.1038/s41467-021-22812-x  0.477
2020 Zhao C, Jiang W, Zayed O, Liu X, Tang K, Nie W, Li Y, Xie S, Li Y, Long T, Liu L, Zhu Y, Zhao Y, Zhu J. The LRXs-RALFs-FER module controls plant growth and salt stress responses by modulating multiple plant hormones National Science Review. DOI: 10.1093/Nsr/Nwaa149  0.713
2018 Zhao Y, Zhang Z, Gao J, Wang P, Hu T, Wang Z, Hou YJ, Wan Y, Liu W, Xie S, Lu T, Xue L, Liu Y, Macho AP, Tao WA, et al. Arabidopsis Duodecuple Mutant of PYL ABA Receptors Reveals PYL Repression of ABA-Independent SnRK2 Activity. Cell Reports. 23: 3340-3351.e5. PMID 29898403 DOI: 10.1016/J.Celrep.2018.05.044  0.686
2017 Wang P, Zhao Y, Li Z, Hsu CC, Liu X, Fu L, Hou YJ, Du Y, Xie S, Zhang C, Gao J, Cao M, Huang X, Zhu Y, Tang K, et al. Reciprocal Regulation of the TOR Kinase and ABA Receptor Balances Plant Growth and Stress Response. Molecular Cell. PMID 29290610 DOI: 10.1016/J.Molcel.2017.12.002  0.748
2017 Zhu Y, Wang B, Tang K, Hsu CC, Xie S, Du H, Yang Y, Tao WA, Zhu JK. An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress. Plos Genetics. 13: e1007124. PMID 29232718 DOI: 10.1371/Journal.Pgen.1007124  0.738
2017 Dworkin M, Xie S, Saha M, Thimmapuram J, Kalavacharla VK. Analyses of methylomes of upland and lowland switchgrass (Panicum virgatum) ecotypes using MeDIP-seq and BS-seq. Bmc Genomics. 18: 851. PMID 29115936 DOI: 10.1186/s12864-017-4218-0  0.32
2016 Duan CG, Wang X, Xie S, Pan L, Miki D, Tang K, Hsu CC, Lei M, Zhong Y, Hou YJ, Wang Z, Zhang Z, Mangrauthia SK, Xu H, Zhang H, et al. A pair of transposon-derived proteins function in a histone acetyltransferase complex for active DNA demethylation. Cell Research. PMID 27934869 DOI: 10.1038/Cr.2016.147  0.726
2016 Lang Z, Xie S, Zhu JK. The 1001 Arabidopsis DNA Methylomes: An Important Resource for Studying Natural Genetic, Epigenetic, and Phenotypic Variation. Trends in Plant Science. PMID 27645898 DOI: 10.1016/J.Tplants.2016.09.001  0.487
2016 Su H, Liu Y, Liu YX, Lv Z, Li H, Xie S, Gao Z, Pang J, Wang XJ, Lai J, Birchler JA, Han F. Dynamic chromatin changes associated with de novo centromere formation in maize euchromatin. The Plant Journal : For Cell and Molecular Biology. PMID 27531446 DOI: 10.1111/Tpj.13305  0.402
2016 Zhao C, Zhang Z, Xie S, Si T, Li Y, Zhu JK. Mutational Evidence for the Critical Role of CBF Genes in Cold Acclimation in Arabidopsis. Plant Physiology. PMID 27252305 DOI: 10.1104/Pp.16.00533  0.556
2016 Zhang J, Xie S, Zhu JK, Gong Z. Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. PMID 27231839 DOI: 10.1111/Tpj.13224  0.669
2016 Zhang J, Xie S, Cheng J, Lai J, Zhu JK, Gong Z. The second subunit of DNA-polymerase delta is required for genomic stability and epigenetic regulation. Plant Physiology. PMID 27208288 DOI: 10.1104/Pp.15.01976  0.681
2016 Hou YJ, Zhu Y, Wang P, Zhao Y, Xie S, Batelli G, Wang B, Duan CG, Wang X, Xing L, Lei M, Yan J, Zhu X, Zhu JK. Type One Protein Phosphatase 1 and Its Regulatory Protein Inhibitor 2 Negatively Regulate ABA Signaling. Plos Genetics. 12: e1005835. PMID 26943172 DOI: 10.1371/Journal.Pgen.1005835  0.713
2016 Liu Y, Xie S, Yu J. Genome-Wide Analysis of the Lysine Biosynthesis Pathway Network during Maize Seed Development. Plos One. 11: e0148287. PMID 26829553 DOI: 10.1371/Journal.Pone.0148287  0.419
2015 Lei L, Shi J, Chen J, Zhang M, Sun S, Xie S, Li X, Zeng B, Peng L, Hauck A, Zhao H, Song W, Fan Z, Lai J. Ribosome profiling reveals dynamic translational landscape in maize seedlings under drought stress. The Plant Journal : For Cell and Molecular Biology. PMID 26568274 DOI: 10.1111/Tpj.13073  0.458
2015 Lei M, Zhang H, Julian R, Tang K, Xie S, Zhu JK. Regulatory link between DNA methylation and active demethylation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 112: 3553-7. PMID 25733903 DOI: 10.1073/Pnas.1502279112  0.574
2015 Wang C, Dong X, Jin D, Zhao Y, Xie S, Li X, He X, Lang Z, Lai J, Zhu JK, Gong Z. Methyl-CpG-binding domain protein MBD7 is required for active DNA demethylation in Arabidopsis. Plant Physiology. 167: 905-14. PMID 25593350 DOI: 10.1104/Pp.114.252106  0.706
2014 Chen J, Zeng B, Zhang M, Xie S, Wang G, Hauck A, Lai J. Dynamic transcriptome landscape of maize embryo and endosperm development. Plant Physiology. 166: 252-64. PMID 25037214 DOI: 10.1104/Pp.114.240689  0.385
2014 Zhao Y, Xie S, Li X, Wang C, Chen Z, Lai J, Gong Z. REPRESSOR OF SILENCING5 Encodes a Member of the Small Heat Shock Protein Family and Is Required for DNA Demethylation in Arabidopsis. The Plant Cell. 26: 2660-2675. PMID 24920332 DOI: 10.1105/Tpc.114.126730  0.668
2014 Zhang M, Xie S, Dong X, Zhao X, Zeng B, Chen J, Li H, Yang W, Zhao H, Wang G, Chen Z, Sun S, Hauck A, Jin W, Lai J. Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize. Genome Research. 24: 167-76. PMID 24131563 DOI: 10.1101/Gr.155879.113  0.41
2013 Qi X, Xie S, Liu Y, Yi F, Yu J. Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing. Plant Molecular Biology. 83: 459-73. PMID 23860794 DOI: 10.1007/S11103-013-0104-6  0.444
2012 Jiang Y, Zeng B, Zhao H, Zhang M, Xie S, Lai J. Genome-wide transcription factor gene prediction and their expressional tissue-specificities in maize. Journal of Integrative Plant Biology. 54: 616-30. PMID 22862992 DOI: 10.1111/J.1744-7909.2012.01149.X  0.363
2011 Zhang M, Zhao H, Xie S, Chen J, Xu Y, Wang K, Zhao H, Guan H, Hu X, Jiao Y, Song W, Lai J. Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm. Proceedings of the National Academy of Sciences of the United States of America. 108: 20042-7. PMID 22114195 DOI: 10.1073/Pnas.1112186108  0.368
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