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Hojoong Kwak, M.D., Ph.D. - Publications

Affiliations: 
Cornell University, Ithaca, NY, United States 
Area:
Transcription, genomics
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lee SA, Kristjánsdóttir K, Kwak H. eRNA co-expression network uncovers TF dependency and convergent cooperativity. Scientific Reports. 13: 19085. PMID 37925545 DOI: 10.1038/s41598-023-46415-2  0.453
2023 Lee SA, Kristjánsdóttir K, Kwak H. Revealing eRNA interactions: TF dependency and convergent cooperativity. Research Square. PMID 36909657 DOI: 10.21203/rs.3.rs-2592357/v1  0.429
2022 Bae S, Kim K, Kang K, Kim H, Lee M, Oh B, Kaneko K, Ma S, Choi JH, Kwak H, Lee EY, Park SH, Park-Min KH. RANKL-responsive epigenetic mechanism reprograms macrophages into bone-resorbing osteoclasts. Cellular & Molecular Immunology. PMID 36513810 DOI: 10.1038/s41423-022-00959-x  0.323
2022 Kwak Y, Daly CWP, Fogarty EA, Grimson A, Kwak H. Dynamic and Widespread Control of Poly(A) Tail Length during Macrophage Activation. Rna (New York, N.Y.). PMID 35512831 DOI: 10.1261/rna.078918.121  0.302
2022 Kwak Y, Kwak H. Genome-Wide Identification of Polyadenylation Dynamics with TED-Seq. Methods in Molecular Biology (Clifton, N.J.). 2404: 281-298. PMID 34694615 DOI: 10.1007/978-1-0716-1851-6_15  0.35
2020 Kristjánsdóttir K, Dziubek A, Kang HM, Kwak H. Population-scale study of eRNA transcription reveals bipartite functional enhancer architecture. Nature Communications. 11: 5963. PMID 33235186 DOI: 10.1038/s41467-020-19829-z  0.515
2019 Ries RJ, Zaccara S, Klein P, Olarerin-George A, Namkoong S, Pickering BF, Patil DP, Kwak H, Lee JH, Jaffrey SR. mA enhances the phase separation potential of mRNA. Nature. PMID 31292544 DOI: 10.1038/S41586-019-1374-1  0.308
2018 Chu T, Rice EJ, Booth GT, Salamanca HH, Wang Z, Core LJ, Longo SL, Corona RJ, Chin LS, Lis JT, Kwak H, Danko CG. Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme. Nature Genetics. PMID 30349114 DOI: 10.1038/S41588-018-0244-3  0.769
2018 Woo YM, Kwak Y, Namkoong S, Kristjánsdóttir K, Lee SH, Lee JH, Kwak H. TED-Seq Identifies the Dynamics of Poly(A) Length during ER Stress. Cell Reports. 24: 3630-3641.e7. PMID 30257221 DOI: 10.1016/J.Celrep.2018.08.084  0.388
2018 Namkoong S, Ho A, Woo YM, Kwak H, Lee JH. Systematic Characterization of Stress-Induced RNA Granulation. Molecular Cell. PMID 29576526 DOI: 10.1016/J.Molcel.2018.02.025  0.325
2016 Cheung VG, Wang IX, Grunseich C, Chang YG, Ramrattan G, Zhang Z, Kwak H. RNA-DNA sequence differences in Saccharomyces cerevisiae. Genome Research. PMID 27638543 DOI: 10.1101/Gr.207878.116  0.45
2016 Zhao Y, Liu Q, Acharya P, Stengel KR, Sheng Q, Zhou X, Kwak H, Fischer MA, Bradner JE, Strickland SA, Mohan SR, Savona MR, Venters BJ, Zhou MM, Lis JT, et al. High-Resolution Mapping of RNA Polymerases Identifies Mechanisms of Sensitivity and Resistance to BET Inhibitors in t(8;21) AML. Cell Reports. PMID 27498870 DOI: 10.1016/J.Celrep.2016.07.032  0.635
2016 Mahat DB, Kwak H, Booth GT, Jonkers IH, Danko CG, Patel RK, Waters CT, Munson K, Core LJ, Lis JT. Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq). Nature Protocols. 11: 1455-1476. PMID 27442863 DOI: 10.1038/Nprot.2016.086  0.774
2015 Welsh IC, Kwak H, Chen FL, Werner M, Shopland LS, Danko CG, Lis JT, Zhang M, Martin JF, Kurpios NA. Chromatin Architecture of the Pitx2 Locus Requires CTCF- and Pitx2-Dependent Asymmetry that Mirrors Embryonic Gut Laterality. Cell Reports. PMID 26411685 DOI: 10.1016/J.Celrep.2015.08.075  0.644
2015 Seo JK, Kang M, Kwak HR, Kim MK, Kim CS, Lee SH, Kim JS, Choi HS. Complete genome sequence of motherwort yellow mottle virus, a novel putative member of the genus Torradovirus. Archives of Virology. 160: 587-90. PMID 25300414 DOI: 10.1007/s00705-014-2254-5  0.41
2014 Jonkers I, Kwak H, Lis JT. Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons. Elife. 3: e02407. PMID 24843027 DOI: 10.7554/Elife.02407  0.695
2014 Satyaki PR, Cuykendall TN, Wei KH, Brideau NJ, Kwak H, Aruna S, Ferree PM, Ji S, Barbash DA. The Hmr and Lhr hybrid incompatibility genes suppress a broad range of heterochromatic repeats. Plos Genetics. 10: e1004240. PMID 24651406 DOI: 10.1371/Journal.Pgen.1004240  0.36
2014 Wang IX, Core LJ, Kwak H, Brady L, Bruzel A, McDaniel L, Richards AL, Wu M, Grunseich C, Lis JT, Cheung VG. RNA-DNA differences are generated in human cells within seconds after RNA exits polymerase II. Cell Reports. 6: 906-15. PMID 24561252 DOI: 10.1016/J.Celrep.2014.01.037  0.771
2014 Pagano JM, Kwak H, Waters CT, Sprouse RO, White BS, Ozer A, Szeto K, Shalloway D, Craighead HG, Lis JT. Defining NELF-E RNA binding in HIV-1 and promoter-proximal pause regions. Plos Genetics. 10: e1004090. PMID 24453987 DOI: 10.1371/Journal.Pgen.1004090  0.707
2014 Buckley MS, Kwak H, Zipfel WR, Lis JT. Kinetics of promoter Pol II on Hsp70 reveal stable pausing and key insights into its regulation. Genes & Development. 28: 14-9. PMID 24395245 DOI: 10.1101/Gad.231886.113  0.756
2014 Jonkers I, Kwak H, Lis JT. Author response: Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons Elife. DOI: 10.7554/Elife.02407.025  0.638
2013 Kwak HR, Kim MK, Lee YJ, Seo JK, Kim JS, Kim KH, Cha B, Choi HS. Molecular Characterization and Variation of the Broad bean wilt virus 2 Isolates Based on Analyses of Complete Genome Sequences. The Plant Pathology Journal. 29: 397-409. PMID 25288968 DOI: 10.5423/Ppj.Oa.03.2013.0036  0.356
2013 Kwak H, Lis JT. Control of transcriptional elongation. Annual Review of Genetics. 47: 483-508. PMID 24050178 DOI: 10.1146/Annurev-Genet-110711-155440  0.683
2013 Schaaf CA, Kwak H, Koenig A, Misulovin Z, Gohara DW, Watson A, Zhou Y, Lis JT, Dorsett D. Genome-wide control of RNA polymerase II activity by cohesin. Plos Genetics. 9: e1003382. PMID 23555293 DOI: 10.1371/Journal.Pgen.1003382  0.706
2013 Kwak H, Fuda NJ, Core LJ, Lis JT. Precise maps of RNA polymerase reveal how promoters direct initiation and pausing. Science (New York, N.Y.). 339: 950-3. PMID 23430654 DOI: 10.1126/Science.1229386  0.71
2012 Core LJ, Waterfall JJ, Gilchrist DA, Fargo DC, Kwak H, Adelman K, Lis JT. Defining the status of RNA polymerase at promoters. Cell Reports. 2: 1025-35. PMID 23062713 DOI: 10.1016/J.Celrep.2012.08.034  0.795
2009 Kwak H, Jeong KC, Chae MJ, Kim SY, Park WY. Flavonoids inhibit the AU-rich element binding of HuC. Bmb Reports. 42: 41-6. PMID 19192392 DOI: 10.5483/Bmbrep.2009.42.1.041  0.424
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