| Year |
Citation |
Score |
| 2023 |
Jorgensen C, Troendle EP, Ulmschneider JP, Searson PC, Ulmschneider MB. A least-squares-fitting procedure for an efficient preclinical ranking of passive transport across the blood-brain barrier endothelium. Journal of Computer-Aided Molecular Design. PMID 37573260 DOI: 10.1007/s10822-023-00525-1 |
0.709 |
|
| 2023 |
Chen CH, Zan B, Ulmschneider JP, Wimley WC, Lu TK, Ulmschneider MB, Zhou L. Development of membrane-active peptide therapeutics in oncology. Journal of Peptide Science : An Official Publication of the European Peptide Society. e3482. PMID 36739581 DOI: 10.1002/psc.3482 |
0.74 |
|
| 2022 |
Chen CH, Pepper K, Ulmschneider JP, Ulmschneider MB, Lu TK. Predicting Membrane-Active Peptide Dynamics in Fluidic Lipid Membranes. Methods in Molecular Biology (Clifton, N.J.). 2405: 115-136. PMID 35298811 DOI: 10.1007/978-1-0716-1855-4_6 |
0.757 |
|
| 2022 |
Chen CH, Liu YH, Eskandari A, Ghimire J, Lin LC, Fang ZS, Wimley WC, Ulmschneider JP, Suntharalingam K, Hu CJ, Ulmschneider MB. Integrated Design of a Membrane-Lytic Peptide-Based Intravenous Nanotherapeutic Suppresses Triple-Negative Breast Cancer. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2105506. PMID 35246961 DOI: 10.1002/advs.202105506 |
0.653 |
|
| 2021 |
Jorgensen C, Ulmschneider MB, Searson PC. Atomistic Model of Solute Transport across the Blood-Brain Barrier. Acs Omega. 7: 1100-1112. PMID 35036773 DOI: 10.1021/acsomega.1c05679 |
0.333 |
|
| 2021 |
Chen CH, Starr CG, Guha S, Wimley WC, Ulmschneider MB, Ulmschneider JP. Tuning of a Membrane-Perforating Antimicrobial Peptide to Selectively Target Membranes of Different Lipid Composition. The Journal of Membrane Biology. PMID 33564914 DOI: 10.1007/s00232-021-00174-1 |
0.703 |
|
| 2020 |
Chen CH, Melo MC, Berglund N, Khan A, de la Fuente C, Ulmschneider JP, Ulmschneider MB. Understanding and modelling the interactions of peptides with membranes: from partitioning to self-assembly. Current Opinion in Structural Biology. 61: 160-166. PMID 32006812 DOI: 10.1016/J.Sbi.2019.12.021 |
0.694 |
|
| 2020 |
Chen CH, Ulmschneider JP, Ulmschneider MB. Mechanisms of a Small Membrane-Active Antimicrobial Peptide from Hyla punctata Australian Journal of Chemistry. 73: 236. DOI: 10.1071/Ch19429 |
0.438 |
|
| 2020 |
Jardón-Valadez E, Chen CH, García-Garibay M, Jiménez-Guzmán J, Ulmschneider MB. Passive Internalization of Bioactive β-Casein Peptides into Phospholipid (POPC) Bilayers. Free Energy Landscapes from Unbiased Equilibrium MD Simulations at μs-Time Scale Food Biophysics. 16: 70-83. DOI: 10.1007/s11483-020-09651-x |
0.302 |
|
| 2019 |
Wang Y, Gallagher E, Jorgensen C, Troendle EP, Hu D, Searson PC, Ulmschneider MB. An experimentally validated approach to calculate the blood-brain barrier permeability of small molecules. Scientific Reports. 9: 6117. PMID 30992465 DOI: 10.1038/s41598-019-42272-0 |
0.725 |
|
| 2019 |
Chen C, Starr CG, Troendle EP, Wiedman G, Wimley WC, Ulmschneider JP, Ulmschneider MB. Simulation-guided rational de novo design of a small pore-forming antimicrobial peptide. Journal of the American Chemical Society. PMID 30839209 DOI: 10.1021/Jacs.8B11939 |
0.717 |
|
| 2018 |
Troendle EP, Khan A, Searson PC, Ulmschneider MB. Predicting drug delivery efficiency into tumor tissues through molecular simulation of transport in complex vascular networks. Journal of Controlled Release : Official Journal of the Controlled Release Society. PMID 30415016 DOI: 10.1016/j.jconrel.2018.11.010 |
0.694 |
|
| 2018 |
Ulmschneider JP, Smith JC, White SH, Ulmschneider MB. The importance of the membrane interface as the reference state for membrane protein stability. Biochimica Et Biophysica Acta. Biomembranes. 1860: 2539-2548. PMID 30293965 DOI: 10.1016/J.Bbamem.2018.09.012 |
0.367 |
|
| 2018 |
Ulmschneider JP, Ulmschneider MB. Molecular Dynamics Simulations Are Redefining Our View of Peptides Interacting with Biological Membranes. Accounts of Chemical Research. PMID 29667836 DOI: 10.1021/Acs.Accounts.7B00613 |
0.495 |
|
| 2018 |
Gumbart JC, Ulmschneider MB, Hazel A, White SH, Ulmschneider JP. Computed Free Energies of Peptide Insertion into Bilayers are Independent of Computational Method. The Journal of Membrane Biology. PMID 29520628 DOI: 10.1007/S00232-018-0026-Y |
0.331 |
|
| 2018 |
Chen CH, Starr CG, Guha S, Bürck J, Ulrich AS, Wimley WC, Ulmschneider MB. Control of Cell-Selective Activity of Membrane-Active Polyleucine-Based Peptides using Database-Guided High-throughput Screening Biophysical Journal. 114: 267a. DOI: 10.1016/J.Bpj.2017.11.1544 |
0.333 |
|
| 2018 |
Ulmschneider M. Spontaneous Assembly of Functional Membrane Proteins from Soluble Membrane Active Peptides Biophysical Journal. 114: 8a. DOI: 10.1016/J.BPJ.2017.11.080 |
0.374 |
|
| 2017 |
Wang Q, Chen CH, Chung CY, Priola J, Chu JH, Tang J, Ulmschneider MB, Betenbaugh MJ. Proline-rich chaperones are compared computationally and experimentally for their abilities to facilitate recombinant butyrylcholinesterase tetramerization in CHO cells. Biotechnology Journal. PMID 29024569 DOI: 10.1002/Biot.201700479 |
0.589 |
|
| 2017 |
Ulmschneider MB, Ulmschneider JP, Freites JA, von Heijne G, Tobias DJ, White SH. Transmembrane helices containing a charged arginine are thermodynamically stable. European Biophysics Journal : Ebj. PMID 28409218 DOI: 10.1007/S00249-017-1206-X |
0.406 |
|
| 2017 |
Chen CH, Starr CG, Wiedman G, Wimley WC, Ulmschneider JP, Ulmschneider MB. Simulation and Database-Guided Antimicrobial Peptide Evolution Biophysical Journal. 112: 382a. DOI: 10.1016/J.Bpj.2016.11.2074 |
0.364 |
|
| 2017 |
Wang Y, Chen C, Hu D, Ulmschneider J, Ulmschneider M. Spontaneous Formation of an Ensemble of Structurally Diverse Membrane Channel Architectures from a Single Antimicrobial Peptide Maculatin Biophysical Journal. 112: 24a. DOI: 10.1016/J.Bpj.2016.11.162 |
0.366 |
|
| 2016 |
Wang Y, Chen CH, Hu D, Ulmschneider MB, Ulmschneider JP. Spontaneous formation of structurally diverse membrane channel architectures from a single antimicrobial peptide. Nature Communications. 7: 13535. PMID 27874004 DOI: 10.1038/Ncomms13535 |
0.667 |
|
| 2016 |
Chen CH, Khan A, Huang JT, Ulmschneider MB. Mechanisms of membrane-pore formation by amyloidogenic peptides in ALS. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 27224887 DOI: 10.1002/chem.201601765 |
0.666 |
|
| 2016 |
Vasquez-Montes V, Kyrychenko A, Rodnin MV, White SH, Ulmschneider MB, Ladokhin AS. Interplay between Hydrophobic and Electrostatic Interactions in Protonation-Dependent Insertion of Transmembrane Helices Biophysical Journal. 110: 573a. DOI: 10.1016/J.Bpj.2015.11.3068 |
0.341 |
|
| 2015 |
Ulmschneider MB, Leman JK, Fennell H, Beckstein O. Peptide Folding in Translocon-Like Pores. The Journal of Membrane Biology. 248: 407-417. PMID 26016471 DOI: 10.1007/S00232-015-9808-7 |
0.723 |
|
| 2015 |
Koehler Leman J, Ulmschneider MB, Gray JJ. Computational modeling of membrane proteins. Proteins. 83: 1-24. PMID 25355688 DOI: 10.1002/Prot.24703 |
0.3 |
|
| 2015 |
Chen CH, Wiedman G, Wang Y, Khan A, Ulmschneider MB. Pore Formation Mechanisms of Melittin-Like Membrane-Active Peptides Biophysical Journal. 108: 497a-498a. DOI: 10.1016/j.bpj.2014.11.2722 |
0.411 |
|
| 2014 |
Ulmschneider MB, Ulmschneider JP, Schiller N, Wallace BA, von Heijne G, White SH. Spontaneous transmembrane helix insertion thermodynamically mimics translocon-guided insertion. Nature Communications. 5: 4863. PMID 25204588 DOI: 10.1038/Ncomms5863 |
0.425 |
|
| 2014 |
Chen CH, Wiedman G, Khan A, Ulmschneider MB. Absorption and folding of melittin onto lipid bilayer membranes via unbiased atomic detail microsecond molecular dynamics simulation. Biochimica Et Biophysica Acta. 1838: 2243-9. PMID 24769159 DOI: 10.1016/j.bbamem.2014.04.012 |
0.691 |
|
| 2014 |
Ulmschneider M, Schiller N, Wallace B, von Heijne G, White SH. Partitioning Charged Side Chains into Lipid Bilayer Membranes Biophysical Journal. 106: 297a. DOI: 10.1016/J.Bpj.2013.11.1730 |
0.391 |
|
| 2013 |
Andersson M, Ulmschneider JP, Ulmschneider MB, White SH. Conformational states of melittin at a bilayer interface. Biophysical Journal. 104: L12-4. PMID 23528098 DOI: 10.1016/J.Bpj.2013.02.006 |
0.387 |
|
| 2013 |
Ballering J, Cybulski LE, Koorengevel MC, Ulmschneider M, de Mendoza D, Killian JA. Mode of Action of the Bacterial Thermosensor Desk Involved in Regulating Membrane Fluidity Biophysical Journal. 104: 595a. DOI: 10.1016/J.Bpj.2012.11.3305 |
0.302 |
|
| 2013 |
Ulmschneider MB, Schiller N, Wallace B, von Heijne G, White SH. Comparison of Direct and Translocon Mediated Insertion of Charge-Bearing Transmembrane Segments Biophysical Journal. 104: 384a. DOI: 10.1016/J.Bpj.2012.11.2140 |
0.369 |
|
| 2012 |
Ulmschneider JP, Smith JC, Ulmschneider MB, Ulrich AS, Strandberg E. Reorientation and dimerization of the membrane-bound antimicrobial peptide PGLa from microsecond all-atom MD simulations. Biophysical Journal. 103: 472-82. PMID 22947863 DOI: 10.1016/J.Bpj.2012.06.040 |
0.419 |
|
| 2012 |
Ulmschneider JP, White SH, Smith J, Ulmschneider MB. The Difference Between Translocon-Assisted Membrane Insertion and Free Surface-To-Bilayer Peptide Insertion Biophysical Journal. 102: 615a. DOI: 10.1016/J.Bpj.2011.11.3355 |
0.388 |
|
| 2012 |
Ulmschneider MB, White SH. Transfer Free Energies from Spontaneous Bilayer Insertion of Water Soluble Trans-Membrane Helices Biophysical Journal. 102: 490a. DOI: 10.1016/J.Bpj.2011.11.2686 |
0.419 |
|
| 2011 |
Ulmschneider JP, Smith JC, White SH, Ulmschneider MB. In silico partitioning and transmembrane insertion of hydrophobic peptides under equilibrium conditions. Journal of the American Chemical Society. 133: 15487-95. PMID 21861483 DOI: 10.1021/Ja204042F |
0.382 |
|
| 2011 |
Ulmschneider JP, Andersson M, Ulmschneider MB. Determining peptide partitioning properties via computer simulation. The Journal of Membrane Biology. 239: 15-26. PMID 21107546 DOI: 10.1007/S00232-010-9324-8 |
0.478 |
|
| 2011 |
Ulmschneider MB. Peptide Transfer Energetics from Direct Water-To-Membrane Partitioning Simulations Biophysical Journal. 100: 631a. DOI: 10.1016/J.BPJ.2010.12.3630 |
0.38 |
|
| 2010 |
Wee CL, Ulmschneider MB, Sansom MSP. Membrane/Toxin Interaction Energetics via Serial Multiscale Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 6: 966-976. PMID 26613320 DOI: 10.1021/Ct900652S |
0.364 |
|
| 2010 |
Ulmschneider MB, Smith JC, Ulmschneider JP. Peptide partitioning properties from direct insertion studies. Biophysical Journal. 98: L60-2. PMID 20550886 DOI: 10.1016/J.Bpj.2010.03.043 |
0.469 |
|
| 2010 |
Ulmschneider MB, Doux JP, Killian JA, Smith JC, Ulmschneider JP. Mechanism and kinetics of peptide partitioning into membranes from all-atom simulations of thermostable peptides. Journal of the American Chemical Society. 132: 3452-60. PMID 20163187 DOI: 10.1021/Ja909347X |
0.459 |
|
| 2009 |
Ulmschneider JP, Doux JP, Killian JA, Smith JC, Ulmschneider MB. Peptide Partitioning and Folding into Lipid Bilayers. Journal of Chemical Theory and Computation. 5: 2202-5. PMID 26616605 DOI: 10.1021/Ct900256K |
0.438 |
|
| 2009 |
Ulmschneider JP, Ulmschneider MB. Sampling efficiency in explicit and implicit membrane environments studied by peptide folding simulations. Proteins. 75: 586-97. PMID 19003985 DOI: 10.1002/Prot.22270 |
0.451 |
|
| 2008 |
Ulmschneider MB, Ulmschneider JP. Folding Peptides into Lipid Bilayer Membranes. Journal of Chemical Theory and Computation. 4: 1807-9. PMID 26620324 DOI: 10.1021/Ct800100M |
0.452 |
|
| 2008 |
Ulmschneider MB, Ulmschneider JP. Membrane adsorption, folding, insertion and translocation of synthetic trans-membrane peptides. Molecular Membrane Biology. 25: 245-57. PMID 18428040 DOI: 10.1080/09687680802020313 |
0.448 |
|
| 2007 |
Ulmschneider JP, Ulmschneider MB. Folding Simulations of the Transmembrane Helix of Virus Protein U in an Implicit Membrane Model. Journal of Chemical Theory and Computation. 3: 2335-46. PMID 26636223 DOI: 10.1021/Ct700103K |
0.362 |
|
| 2007 |
Daidone I, Ulmschneider MB, Di Nola A, Amadei A, Smith JC. Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding. Proceedings of the National Academy of Sciences of the United States of America. 104: 15230-5. PMID 17881585 DOI: 10.1073/Pnas.0701401104 |
0.318 |
|
| 2007 |
Ulmschneider JP, Ulmschneider MB, Di Nola A. Monte Carlo folding of trans-membrane helical peptides in an implicit generalized Born membrane. Proteins. 69: 297-308. PMID 17600830 DOI: 10.1002/Prot.21519 |
0.41 |
|
| 2007 |
Ulmschneider MB, Ulmschneider JP, Sansom MS, Di Nola A. A generalized born implicit-membrane representation compared to experimental insertion free energies. Biophysical Journal. 92: 2338-49. PMID 17218457 DOI: 10.1529/Biophysj.106.081810 |
0.55 |
|
| 2006 |
Ulmschneider MB, Sansom MS, Di Nola A. Properties of integral membrane protein structures: derivation of an implicit membrane potential. Proteins. 59: 252-65. PMID 15723347 DOI: 10.1002/Prot.20334 |
0.507 |
|
| 2005 |
Ulmschneider MB, Sansom MS, Di Nola A. Evaluating tilt angles of membrane-associated helices: comparison of computational and NMR techniques. Biophysical Journal. 90: 1650-60. PMID 16339877 DOI: 10.1529/Biophysj.105.065367 |
0.557 |
|
| 2005 |
Ulmschneider MB, Tieleman DP, Sansom MS. The role of extra-membranous inter-helical loops in helix-helix interactions. Protein Engineering, Design & Selection : Peds. 18: 563-70. PMID 16251222 DOI: 10.1093/Protein/Gzi059 |
0.504 |
|
| 2004 |
Ulmschneider MB, Tieleman DP, Sansom MSP. Interactions of a Transmembrane Helix and a Membrane: Comparative Simulations of Bacteriorhodopsin Helix A The Journal of Physical Chemistry B. 108: 10149-10159. DOI: 10.1021/Jp0379650 |
0.342 |
|
| 2001 |
Ulmschneider MB, Sansom MS. Amino acid distributions in integral membrane protein structures. Biochimica Et Biophysica Acta. 1512: 1-14. PMID 11334619 DOI: 10.1016/S0005-2736(01)00299-1 |
0.455 |
|
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