| Year |
Citation |
Score |
| 2023 |
Pan Q, Portelli S, Nguyen TB, Ascher DB. Characterization on the oncogenic effect of the missense mutations of p53 via machine learning. Briefings in Bioinformatics. 25. PMID 38018912 DOI: 10.1093/bib/bbad428 |
0.715 |
|
| 2023 |
Nguyen TB, de Sá AGC, Rodrigues CHM, Pires DEV, Ascher DB. LEGO-CSM: a tool for functional characterisation of proteins. Bioinformatics (Oxford, England). PMID 37382560 DOI: 10.1093/bioinformatics/btad402 |
0.573 |
|
| 2022 |
Boer JC, Pan Q, Holien JK, Nguyen TB, Ascher DB, Plebanski M. A bias of Asparagine to Lysine mutations in SARS-CoV-2 outside the receptor binding domain affects protein flexibility. Frontiers in Immunology. 13: 954435. PMID 36569921 DOI: 10.3389/fimmu.2022.954435 |
0.741 |
|
| 2022 |
Zhou Y, Al-Jarf R, Alavi A, Nguyen TB, Rodrigues CHM, Pires DEV, Ascher DB. kinCSM: Using graph-based signatures to predict small molecule CDK2 inhibitors. Protein Science : a Publication of the Protein Society. 31: e4453. PMID 36305769 DOI: 10.1002/pro.4453 |
0.668 |
|
| 2022 |
Stephenson SEM, Costain G, Blok LER, Silk MA, Nguyen TB, Dong X, Alhuzaimi DE, Dowling JJ, Walker S, Amburgey K, Hayeems RZ, Rodan LH, Schwartz MA, Picker J, Lynch SA, et al. Germline variants in tumor suppressor FBXW7 lead to impaired ubiquitination and a neurodevelopmental syndrome. American Journal of Human Genetics. 109: 601-617. PMID 35395208 DOI: 10.1016/j.ajhg.2022.03.002 |
0.673 |
|
| 2022 |
Pan Q, Nguyen TB, Ascher DB, Pires DEV. Systematic evaluation of computational tools to predict the effects of mutations on protein stability in the absence of experimental structures. Briefings in Bioinformatics. PMID 35189634 DOI: 10.1093/bib/bbac025 |
0.769 |
|
| 2021 |
Nguyen TB, Pires DEV, Ascher DB. CSM-carbohydrate: protein-carbohydrate binding affinity prediction and docking scoring function. Briefings in Bioinformatics. PMID 34882232 DOI: 10.1093/bib/bbab512 |
0.634 |
|
| 2021 |
Nguyen TB, Myung Y, de Sá AGC, Pires DEV, Ascher DB. mmCSM-NA: accurately predicting effects of single and multiple mutations on protein-nucleic acid binding affinity. Nar Genomics and Bioinformatics. 3: lqab109. PMID 34805992 DOI: 10.1093/nargab/lqab109 |
0.789 |
|
| 2021 |
Zhou Y, Portelli S, Pat M, Rodrigues CHM, Nguyen TB, Pires DEV, Ascher DB. Structure-guided machine learning prediction of drug resistance mutations in Abelson 1 kinase. Computational and Structural Biotechnology Journal. 19: 5381-5391. PMID 34667533 DOI: 10.1016/j.csbj.2021.09.016 |
0.782 |
|
| 2021 |
Zhan J, Harrison AR, Portelli S, Nguyen TB, Kojima I, Zheng S, Yan F, Masatani T, Rawlinson SM, Sethi A, Ito N, Ascher DB, Moseley GW, Gooley PR. Definition of the immune evasion-replication interface of rabies virus P protein. Plos Pathogens. 17: e1009729. PMID 34237115 DOI: 10.1371/journal.ppat.1009729 |
0.753 |
|
| 2021 |
Hnízda A, Tesina P, Nguyen TB, Kukačka Z, Kater L, Chaplin A, Beckmann R, Ascher DB, Novák P, Blundell TL. SAP domain forms a flexible part of DNA aperture in Ku70/80. The Febs Journal. PMID 33511782 DOI: 10.1111/febs.15732 |
0.549 |
|
| 2020 |
Xavier JS, Nguyen TB, Karmarkar M, Portelli S, Rezende PM, Velloso JPL, Ascher DB, Pires DEV. ThermoMutDB: a thermodynamic database for missense mutations. Nucleic Acids Research. PMID 33095862 DOI: 10.1093/nar/gkaa925 |
0.691 |
|
| 2013 |
Tan KP, Nguyen TB, Patel S, Varadarajan R, Madhusudhan MS. Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins. Nucleic Acids Research. 41: W314-21. PMID 23766289 DOI: 10.1093/Nar/Gkt503 |
0.347 |
|
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